prot_C-tenellus_contig6909.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig6909.1.1
Unique Nameprot_C-tenellus_contig6909.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length51
Homology
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: A0A061ECQ0_THECC (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061ECQ0_THECC)

HSP 1 Score: 63.2 bits (152), Expect = 2.560e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    1 MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            +S L  N  WV + LPPG+RAID+KW++K+K N  G   RYKA+LVAKG+
Sbjct:  906 ISALEENKTWVLSKLPPGKRAIDSKWVYKIKYNLDGSVERYKARLVAKGY 955          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: UPI0011E054A5 (ARF guanine-nucleotide exchange factor GNL2 n=1 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011E054A5)

HSP 1 Score: 62.0 bits (149), Expect = 6.550e-10
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:    1 MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            M  L     W+   LPPG+RAI  KW+H++K N +G   +YK+QLVAKGF
Sbjct:  369 MHALRTKGTWILVPLPPGKRAIGCKWVHRIKENSYGSVDKYKSQLVAKGF 418          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: A0A1R3FZX8_COCAP (Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3FZX8_COCAP)

HSP 1 Score: 60.5 bits (145), Expect = 2.280e-9
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    7 NNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            N  WV   LPPG++A+D+KW++K+K    GE  RYKA+LVAKGF
Sbjct:  458 NGTWVLTSLPPGKKAVDSKWVYKVKFKPNGEVERYKARLVAKGF 501          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: A0A392QHT7_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QHT7_9FABA)

HSP 1 Score: 57.0 bits (136), Expect = 3.170e-9
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            ++ +  N+ W    LP G++AID KW+ K+K N  GE  R+KA+LVAKGF
Sbjct:    5 LNSIKCNDTWSLVNLPHGKKAIDVKWVFKVKVNSQGEVTRHKARLVAKGF 54          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: A0A699RZY5_TANCI (Integrase, catalytic core n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699RZY5_TANCI)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-9
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:    1 MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            +  L  N  W    LP G+RAID+KW++K+K    GE  +YKA+LVAKGF
Sbjct:    5 IKALERNGTWTLEDLPKGKRAIDSKWVYKIKFKPNGEVKKYKARLVAKGF 54          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: UPI001027DBD5 (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001027DBD5)

HSP 1 Score: 57.4 bits (137), Expect = 4.500e-9
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    2 SGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
              L+ N+ W    LPPG++AI TKW++KLK    GE  R+KA+LVAKG+
Sbjct:   70 DALIENDTWTLCDLPPGKKAIGTKWVYKLKRKPDGEIDRHKARLVAKGY 118          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: UPI001024D5F0 (hypothetical protein n=1 Tax=Enterobacter cloacae complex sp. 4DZ1-17B1 TaxID=2511991 RepID=UPI001024D5F0)

HSP 1 Score: 57.4 bits (137), Expect = 5.950e-9
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    2 SGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
              L+ N+ W    LPPG++AI TKW++KLK    GE  R+KA+LVAKG+
Sbjct:    9 DALIENDTWTLCDLPPGKKAIGTKWVYKLKRKPDGEIDRHKARLVAKGY 57          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: A0A1R3FUP1_COCAP (Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3FUP1_COCAP)

HSP 1 Score: 58.9 bits (141), Expect = 7.940e-9
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    1 MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            +S L  N+ W    LPP +RAID+KWI+K+K N  G   RYKA+LVAKG+
Sbjct:  267 ISALEANHTWTLTSLPPVKRAIDSKWIYKVKFNPDGTVERYKARLVAKGY 316          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: A0A6L2NJI2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NJI2_TANCI)

HSP 1 Score: 58.9 bits (141), Expect = 7.980e-9
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            +  L  N  W   VLP G+RAID+KW++K+K    GE  +YKA+LVAKGF
Sbjct:  320 IKALERNGTWTLEVLPKGKRAIDSKWVYKIKFKPNGEVEKYKARLVAKGF 369          
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Match: A0A8J9VJX7_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9VJX7_BRAAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.980e-9
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:    1 MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF 50
            ++ LL+NN W     P  +  +D KW+  LK N+FG  ++YKA+LVAKGF
Sbjct:  917 INSLLINNTWTLVQKPENKNIVDCKWVFSLKNNEFGNPIKYKARLVAKGF 966          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6909.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061ECQ0_THECC2.560e-1056.00Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
UPI0011E054A56.550e-1050.00ARF guanine-nucleotide exchange factor GNL2 n=1 Ta... [more]
A0A1R3FZX8_COCAP2.280e-956.82Reverse transcriptase, RNA-dependent DNA polymeras... [more]
A0A392QHT7_9FABA3.170e-948.00Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A699RZY5_TANCI3.470e-950.00Integrase, catalytic core n=1 Tax=Tanacetum cinera... [more]
UPI001027DBD54.500e-951.02hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
UPI001024D5F05.950e-951.02hypothetical protein n=1 Tax=Enterobacter cloacae ... [more]
A0A1R3FUP1_COCAP7.940e-954.00Reverse transcriptase, RNA-dependent DNA polymeras... [more]
A0A6L2NJI2_TANCI7.980e-952.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J9VJX7_BRAAE7.980e-946.00Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 7..50
e-value: 5.6E-9
score: 36.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6909contigC-tenellus_contig6909:3654..3806 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6909.1.1mRNA_C-tenellus_contig6909.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig6909 3585..4055 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig6909.1.1 ID=prot_C-tenellus_contig6909.1.1|Name=mRNA_C-tenellus_contig6909.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=51bp
MSGLLLNNVWVEAVLPPGRRAIDTKWIHKLKTNKFGEAVRYKAQLVAKGF
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2