prot_C-tenellus_contig6853.1.2 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig6853.1.2
Unique Nameprot_C-tenellus_contig6853.1.2
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length213
Homology
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: A0A6H5KKC3_9PHAE (LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKC3_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 2.750e-83
Identity = 133/217 (61.29%), Postives = 159/217 (73.27%), Query Frame = 0
Query:    1 MLASASAFVSNVAPLRTTVSRGLSRT-------------------TTSMSTNAMEGLVGSDIEQPF-FDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAKNEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAI 197
            M+ASA+AFV + APL T  SR  S +                      +STNA++GLVG+DIE    FDPL F ++CPP QMQWYRAAELKHGR+ MLAAFGQI Q +THW+DPSGIF  +   W AMQQVYEQRP AF+Q+ILAIFA EVYG   Q +NEAGGDL FDPL LKP++P AWE+VQLRELKNGRLAM +I GM+VQEH+TG+GV+E +
Sbjct:   10 MVASANAFVPS-APLPTVTSRASSSSLQMIGGFGRKSKPAPKAPPARPVSTNAVDGLVGADIETGGPFDPLGFGKNCPPQQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNKRQEENEAGGDLGFDPLGLKPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKV 225          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 226 bits (577), Expect = 6.410e-72
Identity = 124/210 (59.05%), Postives = 150/210 (71.43%), Query Frame = 0
Query:    4 SASAFVSNVAPLRTTVSRGLSRTTTSMSTNAMEGLVGSDIEQPFFDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAK-NEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPFNDGVGFF 212
            S SAFV + APLRT V    +     +     EGLVGSD+E   +DPL F  +  P  + WYRAAELKHGR+AMLAA G+I QSY H  DP  +FS + +PW A+QQVY +RP+A  Q++LAIFA E  GQ +QAK  +A GDLN+DPL+LKP+DP  WEKVQLRELKNGRLAM++IAG  VQE+LTG G IE I AG+INPF DG G F
Sbjct:   15 SVSAFVQH-APLRTGVVSRSAGPVMKLGPGG-EGLVGSDLELATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQIYAGHINPFGDGQGVF 220          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 211 bits (538), Expect = 5.100e-66
Identity = 113/194 (58.25%), Postives = 138/194 (71.13%), Query Frame = 0
Query:   21 RGLSRTTTSMST-NAMEGLVGSDIEQPFFDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAK-NEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPFNDGVGFF 212
            R  SRT  +M   ++ +GL GSDIE P FDPL F  +  P  + WYRAAELKHGR+AMLAA GQIVQ +    D SG+FS  D+P  A+ +V  +RP+A +Q+ LAIFA E  GQ  QAK  +A GDL +DPL+LK  DP  + KVQ RELKNGRLAM++IAGMLVQE+LTG+GVIE    G+INPF DG GFF
Sbjct:   26 RSFSRTAVTMKLGSSAQGLAGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 219          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 208 bits (530), Expect = 8.060e-65
Identity = 105/181 (58.01%), Postives = 134/181 (74.03%), Query Frame = 0
Query:   33 NAMEGLVGSDIEQPFFDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAK-NEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPFNDGVGFF 212
            ++ EGL+GSD+E P FDPL F  +  P  ++WYRAAELKHGR+AMLAA GQ+VQS+ H  DP  +FS + KPW A+ +V  +RP+A VQ+ LAIFA E  GQ  QAK  +A GDL +DPL+L+ ++   +E+ QLRELKNGRLAM++I  M+VQE+LTG GVIEA R   INPF DG GFF
Sbjct:   40 SSAEGLIGSDLELPEFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDP--VFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIEAYRENAINPFGDGKGFF 218          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 197 bits (500), Expect = 2.910e-60
Identity = 108/193 (55.96%), Postives = 133/193 (68.91%), Query Frame = 0
Query:    5 ASAFVSNVAPLRTTVSRGLSRTTTSMS--TNAMEGLVGSDIEQPFFDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAK-NEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVI 194
            ASAFV N +PL  +  R L RTT SM   TNA +GL+GSD+E P FDPL F  +     ++WYRAAELKHGR+ MLAA GQ+VQS+ H  DPSG+F  TD  + A  +V  +RP A +Q++LAIFA EV G   QAK  +A GDL+FDP  ++  DP  WE  QLRELKNGRLAM+ I  MLVQE ++G GVI
Sbjct:   20 ASAFVPNASPLLKSPKRSL-RTTPSMKLGTNA-QGLIGSDLEWPEFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVI 210          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: A0A7S4UG07_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG07_9DINO)

HSP 1 Score: 181 bits (459), Expect = 4.980e-55
Identity = 94/150 (62.67%), Postives = 112/150 (74.67%), Query Frame = 0
Query:   64 WYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAK-NEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPFNDGVGFF 212
            WYRAAELKHGR+AMLAA GQI QS+    DP  +F+    PW AM +VYE+RP+A VQ++LA FA E  G   QA+  +A GDL FDPL+LK  DP  +E+VQLRELKNGRLAM +IA M+VQE+LTG GVIEA R G INPF DG G+F
Sbjct:    1 WYRAAELKHGRVAMLAALGQIFQSFYTLPDP--VFAEKANPWQAMIKVYEERPLAMVQILLAAFACEAAGAFIQARPGQAPGDLGFDPLNLKSNDPEIFERVQLRELKNGRLAMWAIAAMIVQENLTGYGVIEAYRQGVINPFGDGKGYF 148          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: W7TEK9_9STRA (Fucoxanthin chlorophyll a c binding protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK9_9STRA)

HSP 1 Score: 171 bits (432), Expect = 6.850e-50
Identity = 103/211 (48.82%), Postives = 135/211 (63.98%), Query Frame = 0
Query:    2 LASASAFVSNVAPLRTTVSRGLSRTTTSMSTNAMEGLVGSDIEQPFFDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAKNEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPFNDGVGFF 212
            LA+ASAF+   AP     S    RT   +S + + G+VGSD+E P FDPL  A++     + WYRAAELKHGR+ MLA+ G +VQ   H   P G F  + KP  A+ +V  +RP+A VQ+ +AI A EV G   Q K  A GDL FDPL LKP DP    ++QL+ELKNGRLAML+ AG+  QE++TG G +E + +G+I+PF DG G F
Sbjct:   24 LATASAFL---APASLPSSSSFRRTQGRVSMD-ISGIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHL--PDGPFEAS-KPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQ-KYTAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 226          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: A0A0G4ESK4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ESK4_VITBC)

HSP 1 Score: 170 bits (430), Expect = 1.500e-49
Identity = 96/182 (52.75%), Postives = 122/182 (67.03%), Query Frame = 0
Query:   37 GLVGSDIEQPFFDPLNFAR-DCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAKNEAGGDLNFDPLSLKP-----TDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPFNDGVGFF 212
            GLVGSDIE P FDP   A  D  P  + WYRAAELKHGRI MLAA G   Q      DPSG+FS T K   A+ +V  +RP A +Q++LAI A EV   + +A + A GDL FDPL+L+      ++P A+EK+QLRELKNGRLAM++ AGML+Q+ LTG   +E + +G+I+PF DG G F
Sbjct:   50 GLVGSDIEAPNFDPWKLAAGDLEPETLSWYRAAELKHGRICMLAALGLTTQEVVQLPDPSGVFSET-KGIPALVKVANERPGAIIQLLLAIGAIEV-AALNRADSAAPGDLGFDPLNLQQKLGLASNPEAFEKMQLRELKNGRLAMVATAGMLIQQFLTGQATLEQLLSGHISPFGDGQGVF 229          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 167 bits (423), Expect = 1.340e-48
Identity = 85/175 (48.57%), Postives = 115/175 (65.71%), Query Frame = 0
Query:   37 GLVGSDIEQPFFDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWA------AMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAKNEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPF 205
            GLVG+DI+ P FDPL  ++      ++WYRAAELKHGR+AMLAA G +VQ+         I+ + D P+       A+ +++ +RP+A +Q++ AI A EV G   Q + E GGDL +DPL +KP DP  + K+QLRELKNGRLAM+S+ GM  QE LT  G I+ I  GN+NPF
Sbjct:   56 GLVGNDIDAPNFDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQN---------IYQLPDSPFQEANPINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQILTGNVNPF 221          
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Match: A0A4D9D759_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D759_9STRA)

HSP 1 Score: 168 bits (425), Expect = 9.960e-48
Identity = 90/176 (51.14%), Postives = 120/176 (68.18%), Query Frame = 0
Query:   37 GLVGSDIEQPFFDPLNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSVTDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAKNEAGGDLNFDPLSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAGNINPFNDGVGFF 212
            GL+GSD+E   FDP N A +  P  + WYR+AELKHGRI MLAA G +VQS  H   P  +FS   K   A+ QV  +RP A  Q+++AI A EV G +  ++ +A GD  FDPL+LKP    A+ ++QL+E+KNGRLAM+ +AGML+QE LT  GV+E I +G+++PFNDG G F
Sbjct:  147 GLIGSDVEAIRFDPWNLASERDPEGLAWYRSAELKHGRICMLAALGLLVQSSYHL--PDEVFS-NSKGLDALFQVSAERPQAIAQILIAIGAIEVAG-LAASEGKAPGDFGFDPLNLKPKTEEAFNELQLKEIKNGRLAMVGVAGMLIQETLTNQGVLEQINSGHLSPFNDGQGVF 318          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6853.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKC3_9PHAE2.750e-8361.29LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835YT25_9STRA6.410e-7259.05Light harvesting complex protein n=2 Tax=Tribonema... [more]
W7TCK1_9STRA5.100e-6658.25Chloroplast light harvesting protein isoform 4 n=2... [more]
FCP_CHAMQ8.060e-6558.01Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]
A0A0G4GYX1_VITBC2.910e-6055.96Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S4UG07_9DINO4.980e-5562.67Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
W7TEK9_9STRA6.850e-5048.82Fucoxanthin chlorophyll a c binding protein n=3 Ta... [more]
A0A0G4ESK4_VITBC1.500e-4952.75Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4F0S3_VITBC1.340e-4848.57Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9D759_9STRA9.960e-4851.14Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 41..186
e-value: 1.6E-33
score: 116.5
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 26..211
e-value: 7.5E-41
score: 142.2
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 23..199
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 38..206
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 23..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6853contigC-tenellus_contig6853:2308..3923 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6853.1.2mRNA_C-tenellus_contig6853.1.2Choristocarpus tenellus KU2346mRNAC-tenellus_contig6853 1526..3944 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig6853.1.2 ID=prot_C-tenellus_contig6853.1.2|Name=mRNA_C-tenellus_contig6853.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=213bp
MLASASAFVSNVAPLRTTVSRGLSRTTTSMSTNAMEGLVGSDIEQPFFDP
LNFARDCPPAQMQWYRAAELKHGRIAMLAAFGQIVQSYTHWDDPSGIFSV
TDKPWAAMQQVYEQRPIAFVQVILAIFAAEVYGQMEQAKNEAGGDLNFDP
LSLKPTDPVAWEKVQLRELKNGRLAMLSIAGMLVQEHLTGMGVIEAIRAG
NINPFNDGVGFF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR001344Chloro_AB-bd_pln