prot_C-tenellus_contig677.7.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig677.7.1
Unique Nameprot_C-tenellus_contig677.7.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length350
Homology
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 2.590e-123
Identity = 182/327 (55.66%), Postives = 231/327 (70.64%), Query Frame = 0
Query:   24 LDVLYFDEQVVVLNKPSGLRTVPGNQ-GEGLDSKAQVEWHRGTKRSRQEFWTQVVHDTCTSLLADTNSSTSVPVGEGEEGRFSNPPNGNEQIATCLRRLAGDHNVPRRKTKFLKYTSSSLGLQGKEGTDMAEKLWQTMSSNLNHEAGPGCDCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            +DV++ D  +VVLNKP+GLRTVPG   G   +++  VEWH GTKR RQEFWT VVH  C SLL D  +       EGEE           +    LRRL  ++NVPR+++KF  YT+ +LGL+G+EG  ++ +LW T+  +L  E GPG DCLL RV  RWPEARHVHRLDQ TSG+VV+ALT EAA+++ +QFRERV +K YTAVLEGRM +    GEV AK+RPD ++RP+Q+  E+ G  A T W+ +KR+ + T VDF P TGRTHQIRMHA+ LGHP++GD+LYGT EG A S RL+LHAR +SF HP+TGE V FE P PF
Sbjct:   24 VDVIFSDPDIVVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLNDEKT-------EGEE-----------EFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGTAKSERLLLHARRISFPHPRTGETVEFECPPPF 332          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A2D5B3Y4_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5B3Y4_9BACT)

HSP 1 Score: 177 bits (448), Expect = 2.060e-50
Identity = 86/177 (48.59%), Postives = 123/177 (69.49%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DCL +R    +P AR VHRLD+ TSGV+V+A  A+  ++LS+QF +R   K Y AV+ GR+    D+G + A MR DL+D PRQ++D++ G+SA T ++V++R  + TR++  P TGR+HQ+R+H +++GHPILGD LY T E  +MS RL+LHA  L+  HP TG+ V F  P PF
Sbjct:   53 DCLASRAEAAFPGARIVHRLDRDTSGVIVMARDADTHRELSRQFHDREVDKQYEAVVGGRL--AVDDGVIDAPMRKDLDDPPRQIIDDEQGRSAKTGFRVIERMDDRTRMELSPVTGRSHQLRVHMMSIGHPILGDDLYATPELLSMSRRLLLHATLLTITHPATGKPVTFHDPCPF 227          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: UPI000833CE2D (pseudouridine synthase n=1 Tax=Neptuniibacter marinus TaxID=1806670 RepID=UPI000833CE2D)

HSP 1 Score: 176 bits (445), Expect = 3.250e-50
Identity = 94/179 (52.51%), Postives = 119/179 (66.48%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREAN--CTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DCL  RV   +P AR VHRLD  TSGV+V+ALT EA + L++ F+ER T K Y A++ G   +   EG V   +R D E+RP Q++D + GK+A T WKVL +E++   TRV+  P TGR+HQ+R+H  A+GHPILGD  Y   EGQA S RL+LHA  LSF HP TGE V F  P PF
Sbjct:   32 DCLWRRVQTIFPTARVVHRLDYATSGVMVLALTLEAQRSLNRSFQERQTHKRYQAIISGTPEQS--EGSVELPLRCDWENRPLQIVDFEQGKNALTHWKVLAKESSEQDTRVELTPITGRSHQLRVHMQAMGHPILGDRFYADTEGQAKSDRLLLHAEQLSFPHPITGEFVEFFVPCPF 208          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A3N1NVW8_9GAMM (Pseudouridine synthase n=2 Tax=Marinimicrobium TaxID=359337 RepID=A0A3N1NVW8_9GAMM)

HSP 1 Score: 175 bits (444), Expect = 5.020e-50
Identity = 92/177 (51.98%), Postives = 120/177 (67.80%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DCL+NR+   +P AR VHRLDQ TSG+VV+ L  EA K L++QF +R   KCYTAV+ G M +  + GEV   +  D  +RPRQ +D + GK+A T+++VL+R A+ T V  +P TGR+HQ+R+H  ALGHPILGD LY T    A S RL+LHA ++ F HPQTG  V  ESP  F
Sbjct:   37 DCLINRLLVPYPNARIVHRLDQATSGLVVIPLGYEAQKHLARQFEQRSVHKCYTAVVGGVMAD--EAGEVDLPLICDWPNRPRQKVDYNDGKAALTRYRVLQRSADATWVALEPVTGRSHQLRVHMQALGHPILGDNLYATPAYLAASDRLLLHATTIEFTHPQTGSPVHCESPPVF 211          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A2E2KKK0_9GAMM (RNA pseudouridine synthase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E2KKK0_9GAMM)

HSP 1 Score: 174 bits (440), Expect = 1.710e-49
Identity = 85/177 (48.02%), Postives = 117/177 (66.10%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DCL  RV   +P AR VHRLD  TSG++V+ALT EA +D+S+ F+ER T K Y A++ G+  E   +G V   +  D E+RP Q++D + GK+A T WK    ++  TRV+  P TGR+HQ+R+H  A+GHPI+GD  Y   + +A+S RL+LHA  LSF HP+TG+ V F  P PF
Sbjct:   32 DCLWRRVQAEFPTARVVHRLDYATSGLMVLALTLEAQRDISRSFQERKTGKLYQAIISGKPSE--KQGSVDLPLICDWENRPLQIVDHEHGKNALTHWKATGEDSRGTRVELTPITGRSHQLRVHMQAMGHPIIGDRFYADEDSKALSDRLLLHAERLSFPHPETGKVVEFTVPCPF 206          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A1N6RKQ0_9GAMM (Ribosomal large subunit pseudouridine synthase A n=2 Tax=Marinobacterium stanieri TaxID=49186 RepID=A0A1N6RKQ0_9GAMM)

HSP 1 Score: 173 bits (439), Expect = 2.560e-49
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREA--NCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DCL  RV + +P AR VHRLDQ TSG++V+AL+A++ + LS QF+ER T K Y+AV+EG M +  D+G V   +R D E RP Q++D D GK A+T+W    R+   N +RV   P TGR+HQ+R+H +A+GHPILGD  Y   E     SRL LHA  L+F HP+TGE++  ESP PF
Sbjct:   32 DCLWRRVQQHFPTARIVHRLDQATSGILVLALSADSHRHLSMQFQERGTDKRYSAVVEGLMEQ--DQGCVELPLRCDWERRPLQMVDHDKGKQATTEWVCTLRDPGLNTSRVTLYPITGRSHQLRVHMMAIGHPILGDRFYAQPEQAERYSRLHLHAEMLAFDHPETGERLELESPCPF 208          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A1H9I0B1_9GAMM (Pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=A0A1H9I0B1_9GAMM)

HSP 1 Score: 172 bits (437), Expect = 5.740e-49
Identity = 87/177 (49.15%), Postives = 120/177 (67.80%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DCL  RV + +P AR VHRLD  TSGV+V+AL+A + + LS QF+ER T K Y A++ GR+ + +  G V   +R D E+RP Q++D   GKSA T W+++++  + +RV+  P TGR+HQ+R+H   LGHPILGD  Y T      S RL+LHA SLSF+HP +GE + F SP+PF
Sbjct:   38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALSATSHRHLSIQFQERKTDKSYQAIVAGRLAKNS--GTVNQPLRCDWENRPLQIIDHQQGKSAQTHWRLIEQLDDASRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPRQIERSERLLLHAHSLSFSHPVSGEPLSFSSPMPF 212          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A285SNU8_9HYPH (Pseudouridine synthase n=4 Tax=Stappia indica TaxID=538381 RepID=A0A285SNU8_9HYPH)

HSP 1 Score: 172 bits (437), Expect = 1.080e-48
Identity = 87/177 (49.15%), Postives = 114/177 (64.41%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DC+  R     P++R VHRLD  TSGV+V+A+   A + L  QF  R  AK Y A + GRM E  D G V   +R D  +RPRQ++D+  G+SA T W+VL+RE + TRV  +P TGR+HQ+R+H  A+GHPILGD LYG  E Q  ++RL LHA+SL+  HP  GE   F +P PF
Sbjct:   59 DCVAARALSLHPQSRIVHRLDMDTSGVLVLAMNPAAHRHLGLQFERRHVAKTYLARVAGRMAE--DSGTVDLPLRCDWPNRPRQMVDQQEGRSAITHWRVLERERDATRVQLEPVTGRSHQLRVHMCAIGHPILGDPLYGDSESQQAAARLQLHAKSLTLHHPSGGEHKTFSAPSPF 233          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A2E5DZI3_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5DZI3_9BACT)

HSP 1 Score: 172 bits (435), Expect = 1.140e-48
Identity = 81/177 (45.76%), Postives = 121/177 (68.36%), Query Frame = 0
Query:  173 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            DCL+ R    +P AR VHRLD+ TSG++V+A  A+  ++LS+QF++R   K Y A+  G +    DEG + A +R D+++ PRQ++D+  G+ + T+W V++R  +CTR+   P TGR+HQ+R+H  ++GHPILGD LY   E +A   RLMLHA  L F HP +G++++FESP PF
Sbjct:   38 DCLVARAQADFPGARIVHRLDRDTSGLIVLARDADTHRELSRQFQDREVEKTYEAIAGGIL--AIDEGMIDAAIRKDMDNPPRQMIDDVQGRPSKTRWMVMERGDDCTRIQLFPLTGRSHQLRLHLQSIGHPILGDDLYAPDEMRARVDRLMLHATILEFTHPSSGKRLIFESPAPF 212          
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: UPI001AE8CCD4 (RluA family pseudouridine synthase n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AE8CCD4)

HSP 1 Score: 171 bits (434), Expect = 1.610e-48
Identity = 91/182 (50.00%), Postives = 119/182 (65.38%), Query Frame = 0
Query:  169 GP-GCDCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 349
            GP G DCL+ RV   + +A  VHRLD  TSGV+V+A  AEA + LS+ F +R+T K Y AV+ G M   TD GE+   +  D  +RP+Q++D   GKS+ T++ VL R    TRV  +P TGR+HQ+R+H LALGHPI+GD LY   E  A+S RL+LHA  L   HP TGE++ F SP PF
Sbjct:   33 GPAGEDCLIRRVQAEYADALIVHRLDMATSGVMVMARGAEAHRTLSKAFADRLTDKAYVAVVAGEM--ATDAGEIDLPLVTDWPNRPKQIVDHKIGKSSLTRYHVLARGEGTTRVALEPVTGRSHQLRVHMLALGHPIVGDALYAPAEIVALSPRLLLHAERLEVPHPVTGERMAFVSPAPF 212          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R0_ECTSI2.590e-12355.66Ribosomal large subunit pseudouridine synthase A n... [more]
A0A2D5B3Y4_9BACT2.060e-5048.59RNA pseudouridine synthase n=1 Tax=Phycisphaerae b... [more]
UPI000833CE2D3.250e-5052.51pseudouridine synthase n=1 Tax=Neptuniibacter mari... [more]
A0A3N1NVW8_9GAMM5.020e-5051.98Pseudouridine synthase n=2 Tax=Marinimicrobium Tax... [more]
A0A2E2KKK0_9GAMM1.710e-4948.02RNA pseudouridine synthase n=1 Tax=Oceanospirillac... [more]
A0A1N6RKQ0_9GAMM2.560e-4950.84Ribosomal large subunit pseudouridine synthase A n... [more]
A0A1H9I0B1_9GAMM5.740e-4949.15Pseudouridine synthase n=1 Tax=Amphritea atlantica... [more]
A0A285SNU8_9HYPH1.080e-4849.15Pseudouridine synthase n=4 Tax=Stappia indica TaxI... [more]
A0A2E5DZI3_9BACT1.140e-4845.76RNA pseudouridine synthase n=1 Tax=Phycisphaerae b... [more]
UPI001AE8CCD41.610e-4850.00RluA family pseudouridine synthase n=1 Tax=Asticca... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 185..298
e-value: 6.3E-24
score: 84.9
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 184..332
e-value: 2.0E-54
score: 174.833
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 155..349
e-value: 1.0E-57
score: 197.2
NoneNo IPR availablePANTHERPTHR21600:SF56TRNA PSEUDOURIDINE SYNTHASE Ccoord: 174..349
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 174..349
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 189..203
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 170..348

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig677contigC-tenellus_contig677:5425..9151 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig677.7.1mRNA_C-tenellus_contig677.7.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig677 5419..9231 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig677.7.1 ID=prot_C-tenellus_contig677.7.1|Name=mRNA_C-tenellus_contig677.7.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=350bp
MACSEEGPKERLCMSRRVGEDAALDVLYFDEQVVVLNKPSGLRTVPGNQG
EGLDSKAQVEWHRGTKRSRQEFWTQVVHDTCTSLLADTNSSTSVPVGEGE
EGRFSNPPNGNEQIATCLRRLAGDHNVPRRKTKFLKYTSSSLGLQGKEGT
DMAEKLWQTMSSNLNHEAGPGCDCLLNRVFKRWPEARHVHRLDQGTSGVV
VVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDL
EDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALA
LGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf