prot_C-tenellus_contig10993.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10993.2.1
Unique Nameprot_C-tenellus_contig10993.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length58
Homology
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.390e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            +VFRFCRSKCHKNFTRKRNPRKS+WTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR
Sbjct:   28 KVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 84          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.600e-27
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            +VF+FCRSKCHKNF +KRNPRK +WTKA+R+AAGKEM+VDTTFDFEKRRNRPVKYDR
Sbjct:   28 KVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDR 84          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.770e-26
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            +VF FCRSKCH+NF +KRNPRK+RWTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR
Sbjct:   27 KVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDR 83          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: UPI000645015C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645015C)

HSP 1 Score: 101 bits (251), Expect = 6.950e-26
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            ++FRFCRSKCHKNF  KRNPRK+RWTKAFRR AGKEM+VD TF+FEK+RNRPVKYDR
Sbjct:   27 KLFRFCRSKCHKNFKLKRNPRKTRWTKAFRRVAGKEMTVDKTFEFEKKRNRPVKYDR 83          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: F0W4S5_9STRA (Ribosome biogenesis protein RLP24 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4S5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.760e-25
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            +VFRFCRSKCHKNF RKRNPRK +WTK+FR+AAGKEM++DTT+DFEK+RNR VKYDR
Sbjct:   27 KVFRFCRSKCHKNFNRKRNPRKVKWTKSFRKAAGKEMALDTTYDFEKQRNRAVKYDR 83          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A7S3GNQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNQ2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.770e-25
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            + F FCRSKCHKNF RKRNPRK +WTKAFR++AGKEM+VD+TF+FEKRRNRPVKY+R
Sbjct:   27 KTFEFCRSKCHKNFNRKRNPRKMKWTKAFRKSAGKEMTVDSTFEFEKRRNRPVKYNR 83          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: H3BMQ2_HUMAN (Probable ribosome biogenesis protein RLP24 n=6 Tax=Boreoeutheria TaxID=1437010 RepID=H3BMQ2_HUMAN)

HSP 1 Score: 99.8 bits (247), Expect = 1.880e-25
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 LQVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            LQVFRFC+SKCHKNF +KRNPRK RWTKAFR+AAGKE++VD +F+FEKRRN P+KY R
Sbjct:    9 LQVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQR 66          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A8C2QEP4_CRIGR (Ribosomal L24 domain containing 1 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A8C2QEP4_CRIGR)

HSP 1 Score: 100 bits (248), Expect = 1.930e-25
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 LQVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            LQVFRFC+SKCHKNF +KRNPRK RWTKAFR+AAGKE++VD +F+FEKRRN PVKY R
Sbjct:   23 LQVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQR 80          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A4P9YYP5_9FUNG (Ribosomal protein L24e-domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YYP5_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 1.980e-25
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            +VFRFCRSKCHKNF  KRNPRK RWTKAFRRAAGKEM++D TF+FEKRRN PV+YDR
Sbjct:   27 KVFRFCRSKCHKNFKMKRNPRKVRWTKAFRRAAGKEMTIDATFEFEKRRNIPVRYDR 83          
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A7S4IQT4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQT4_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 2.060e-25
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 0
Query:    2 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 58
            +VFRFCRSKCHKNF RKRNPRK++WTKA+RRA+GK+M+VDTT +FEK+RNRP+KYDR
Sbjct:   37 KVFRFCRSKCHKNFKRKRNPRKTKWTKAYRRASGKDMTVDTTLEFEKKRNRPLKYDR 93          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE3.390e-3196.49TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA3.600e-2784.21RL30, ribosomal protein 30 60S large ribosomal sub... [more]
A0A4D9CSX3_9STRA4.770e-2682.46TRASH domain-containing protein n=2 Tax=Monodopsid... [more]
UPI000645015C6.950e-2682.46hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0W4S5_9STRA1.760e-2580.70Ribosome biogenesis protein RLP24 putative n=1 Tax... [more]
A0A7S3GNQ2_9STRA1.770e-2578.95Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
H3BMQ2_HUMAN1.880e-2577.59Probable ribosome biogenesis protein RLP24 n=6 Tax... [more]
A0A8C2QEP4_CRIGR1.930e-2579.31Ribosomal L24 domain containing 1 n=1 Tax=Cricetul... [more]
A0A4P9YYP5_9FUNG1.980e-2582.46Ribosomal protein L24e-domain-containing protein n... [more]
A0A7S4IQT4_9EUKA2.060e-2578.95Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 2..40
e-value: 1.5E-15
score: 57.2
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 2..58
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 1..43
e-value: 4.3E-15
score: 57.5
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 2..58
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 2..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10993contigC-tenellus_contig10993:702..1807 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10993.2.1mRNA_C-tenellus_contig10993.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10993 702..1807 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10993.2.1 ID=prot_C-tenellus_contig10993.2.1|Name=mRNA_C-tenellus_contig10993.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=58bp
LQVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRR
NRPVKYDR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000988Ribosomal_L24e-rel
IPR038630L24e/L24_sf