mRNA_C-tenellus_contig10993.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10993.2.1
Unique NamemRNA_C-tenellus_contig10993.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.390e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            +VFRFCRSKCHKNFTRKRNPRKS+WTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR
Sbjct:   28 KVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 84
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BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.600e-27
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            +VF+FCRSKCHKNF +KRNPRK +WTKA+R+AAGKEM+VDTTFDFEKRRNRPVKYDR
Sbjct:   28 KVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDR 84
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BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.770e-26
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            +VF FCRSKCH+NF +KRNPRK+RWTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR
Sbjct:   27 KVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDR 83
[Close]
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: UPI000645015C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645015C)

HSP 1 Score: 101 bits (251), Expect = 6.950e-26
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            ++FRFCRSKCHKNF  KRNPRK+RWTKAFRR AGKEM+VD TF+FEK+RNRPVKYDR
Sbjct:   27 KLFRFCRSKCHKNFKLKRNPRKTRWTKAFRRVAGKEMTVDKTFEFEKKRNRPVKYDR 83
[Close]
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: F0W4S5_9STRA (Ribosome biogenesis protein RLP24 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4S5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.760e-25
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            +VFRFCRSKCHKNF RKRNPRK +WTK+FR+AAGKEM++DTT+DFEK+RNR VKYDR
Sbjct:   27 KVFRFCRSKCHKNFNRKRNPRKVKWTKSFRKAAGKEMALDTTYDFEKQRNRAVKYDR 83
[Close]
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A7S3GNQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNQ2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.770e-25
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            + F FCRSKCHKNF RKRNPRK +WTKAFR++AGKEM+VD+TF+FEKRRNRPVKY+R
Sbjct:   27 KTFEFCRSKCHKNFNRKRNPRKMKWTKAFRKSAGKEMTVDSTFEFEKRRNRPVKYNR 83
[Close]
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: H3BMQ2_HUMAN (Probable ribosome biogenesis protein RLP24 n=6 Tax=Boreoeutheria TaxID=1437010 RepID=H3BMQ2_HUMAN)

HSP 1 Score: 99.8 bits (247), Expect = 1.880e-25
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 LQVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            LQVFRFC+SKCHKNF +KRNPRK RWTKAFR+AAGKE++VD +F+FEKRRN P+KY R
Sbjct:    9 LQVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQR 66
[Close]
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A8C2QEP4_CRIGR (Ribosomal L24 domain containing 1 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A8C2QEP4_CRIGR)

HSP 1 Score: 100 bits (248), Expect = 1.930e-25
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 LQVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            LQVFRFC+SKCHKNF +KRNPRK RWTKAFR+AAGKE++VD +F+FEKRRN PVKY R
Sbjct:   23 LQVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQR 80
[Close]
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A4P9YYP5_9FUNG (Ribosomal protein L24e-domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YYP5_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 1.980e-25
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            +VFRFCRSKCHKNF  KRNPRK RWTKAFRRAAGKEM++D TF+FEKRRN PV+YDR
Sbjct:   27 KVFRFCRSKCHKNFKMKRNPRKVRWTKAFRRAAGKEMTIDATFEFEKRRNIPVRYDR 83
[Close]
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Match: A0A7S4IQT4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQT4_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 2.060e-25
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    4 QVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDR 174
            +VFRFCRSKCHKNF RKRNPRK++WTKA+RRA+GK+M+VDTT +FEK+RNRP+KYDR
Sbjct:   37 KVFRFCRSKCHKNFKRKRNPRKTKWTKAYRRASGKDMTVDTTLEFEKKRNRPLKYDR 93
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10993.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE3.390e-3196.49TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA3.600e-2784.21RL30, ribosomal protein 30 60S large ribosomal sub... [more]
A0A4D9CSX3_9STRA4.770e-2682.46TRASH domain-containing protein n=2 Tax=Monodopsid... [more]
UPI000645015C6.950e-2682.46hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0W4S5_9STRA1.760e-2580.70Ribosome biogenesis protein RLP24 putative n=1 Tax... [more]
A0A7S3GNQ2_9STRA1.770e-2578.95Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
H3BMQ2_HUMAN1.880e-2577.59Probable ribosome biogenesis protein RLP24 n=6 Tax... [more]
A0A8C2QEP4_CRIGR1.930e-2579.31Ribosomal L24 domain containing 1 n=1 Tax=Cricetul... [more]
A0A4P9YYP5_9FUNG1.980e-2582.46Ribosomal protein L24e-domain-containing protein n... [more]
A0A7S4IQT4_9EUKA2.060e-2578.95Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10993contigC-tenellus_contig10993:702..1807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000018145
PFAMsABC_tran,Fer4,RLI
Model size174
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.63e-24
EggNOG OGsCOG1245@1|root,COG2075@1|root,KOG0063@2759|Eukaryota,KOG1723@2759|Eukaryota,1MF0D@121069|Pythiales
DescriptionATP-binding cassette sub-family E member 1. Source PGD
Cds size174
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.9278386-CDS-C-tenellus_contig10993:701..7551680789157.9278386-CDS-C-tenellus_contig10993:701..755Choristocarpus tenellus KU2346CDSC-tenellus_contig10993 702..755 -
1680789157.9374425-CDS-C-tenellus_contig10993:1687..18071680789157.9374425-CDS-C-tenellus_contig10993:1687..1807Choristocarpus tenellus KU2346CDSC-tenellus_contig10993 1688..1807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10993.2.1prot_C-tenellus_contig10993.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10993 702..1807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10993.2.1

>prot_C-tenellus_contig10993.2.1 ID=prot_C-tenellus_contig10993.2.1|Name=mRNA_C-tenellus_contig10993.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=58bp
LQVFRFCRSKCHKNFTRKRNPRKSRWTKAFRRAAGKEMSVDTTFDFEKRR
NRPVKYDR
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mRNA from alignment at C-tenellus_contig10993:702..1807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10993.2.1 ID=mRNA_C-tenellus_contig10993.2.1|Name=mRNA_C-tenellus_contig10993.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1106bp|location=Sequence derived from alignment at C-tenellus_contig10993:702..1807- (Choristocarpus tenellus KU2346)
TTACAGGTCTTCAGGTTCTGTCGGTCAAAGTGCCACAAAAATTTCACGAG
AAAACGAAACCCACGTAAGTCACGGTGGACAAAGGCCTTCCGCAGGGCAG
CGGGCAAGGAGATGTCAGTGGTGAGTGCTCAGCCTTATCTTATTCTCTTG
CTGCAACGAAGACCCCAAGATTAGTAAAATATCAGTTACAAACCTCCTGG
GAGATACAATCTGCTGAGAAAGGAAGACGGGCTTATCTTGATCTCTCTTC
CTGAAAGAGTTATCACGGCGGAACTGTGTTGGAGTTATTTGTTGATCAAA
TACAGGCAGGTTCTGTGCTCCGAAAGCAGCAGTTTGCAGAAAGGTTTCAT
CACAAGGTCTTCTCTTGTCAACAATCTTCCTGATGACCAAAATTTAAGGT
CCAGAAGGCCATGCCTGTCAAATTGTGTCTTGAACCCCTTTACGAGACCC
AGACTTGCCGATTTCCGTATATTATTAGATGTACCACCACCAGGGTCCTG
TTAATTTAGTTGTGAAGGGAGTTAGTTGGTTTTGGTTGACTGATCACGCA
AGAAATATTTGATGGCATTTTTTGGAGTCTGCAGTTGTTGTCAGGAATAA
TCTTTGCACCATTGTGCTGTTTCCGAGACCCCCTCCTTTTTGGTTGCTGG
AAATTAGGACTTTTCCAGGTTTGGTTGGCAGCCTGTTCCAAGAACAGCAC
AATCAATTTCAGTGGTTAGTTTGATTGTACTTGGTGGCATCTTGATGTGG
GGGTGGGGCAGTGGGTGGTAATTGGATATGTTTTCGAGGTGTGGTGAGTA
TTGGTCCAATAGGGATAACACCTGTGTCACAGTTCCAGTTAGAGCTTTAT
GATGCCGCATTGAACTTGGAATTTTGTTGTTAGCGTCAGTGCTGTCAGTG
CTTGGTGCATACAAGCACTAGCAGGAGAGATTATTCTGATTCCAATGAGT
GTGGATGGTTCTACTCAATTTTATATCAATGCGGCGATTGCATTGAGACC
TTCATGTATGAATCTCAACTGCCTTTCCTGCTTGATTGTCTTTGCTCATC
AGGATACGACGTTTGACTTTGAAAAGCGACGTAATAGGCCTGTCAAGTAT
GACCGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10993:702..1807-

>mRNA_C-tenellus_contig10993.2.1 ID=mRNA_C-tenellus_contig10993.2.1|Name=mRNA_C-tenellus_contig10993.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=174bp|location=Sequence derived from alignment at C-tenellus_contig10993:702..1807- (Choristocarpus tenellus KU2346)
TTACAGGTCTTCAGGTTCTGTCGGTCAAAGTGCCACAAAAATTTCACGAG
AAAACGAAACCCACGTAAGTCACGGTGGACAAAGGCCTTCCGCAGGGCAG
CGGGCAAGGAGATGTCAGTGGATACGACGTTTGACTTTGAAAAGCGACGT
AATAGGCCTGTCAAGTATGACCGG
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