prot_C-tenellus_contig10477.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10477.1.1
Unique Nameprot_C-tenellus_contig10477.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length258
Homology
BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Match: D7G633_ECTSI (WD40 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G633_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.820e-31
Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = 0
Query:    1 MSEPVEAKGHSGEVIAVEYIPT-LQLLVTSGAKEGCLRCWEIHSIQELQII---PNRRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQG-----FSNRLISGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDADLRVWETSTRQCKRVL 166
            +S    + GHSG+V+A+ ++     +LVTSG K+  LRCW++    +L  +     +RQ  A EPQVMLKWL   R+  +  P+          D +G      S  L+SGGA G +NIW+++   L I + L GHT AVT+AC++P P++ V+G +DAD+RVW T T + KRV+
Sbjct:   21 LSSSPASMGHSGQVLAMAFVAAPFNVLVTSGEKDRMLRCWDMILKPKLDAVVGPAGKRQAKACEPQVMLKWLRSLRSGGVDPPRSXXXXXXXXXDSKGNGAADVSAILVSGGAGGTVNIWQLTAKHLEILNTLPGHTGAVTSACVLPHPEVFVTGSLDADIRVWATKTYKFKRVM 195          
BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Match: A0A6H5KFW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.330e-18
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 0
Query:   53 RRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQG-----FSNRLISGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDADLRVWETSTRQCKR 164
            +RQ  A EPQVMLKWL    +  +  P+ +  GS    D +G      S  L+SGGA G +NIW+++   L I + L GHT AVT+AC++P P++ V+G +DAD+RV   + R  +R
Sbjct:   16 KRQAKACEPQVMLKWLRSPPSGGVDPPRGSGGGSXXXXDSKGNGAADVSAILVSGGAGGTVNIWQLTAKHLDILNTLPGHTGAVTSACVLPHPEVFVTGSLDADIRVTYKAVRYWRR 132          
BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Match: A0A2E7QLM1_9BACT (GYF_2 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E7QLM1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 9.200e-7
Identity = 42/162 (25.93%), Postives = 68/162 (41.98%), Query Frame = 0
Query:    9 GHSGEVIAVEYIPTLQLLVTSGAKEGCLRCWEIHS------------IQELQIIPNRRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQGFSNRLISGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDADLRVWETS 158
            GH+  + ++ + P  Q LV SG   G L  W   S            I+++          A   Q M  W    + +S +  KP    S    + +   N    G   G + +W+  G+ L+      GHT+AVTA    P  +++++GG D  +RVW+ S
Sbjct:  148 GHTNTITSLSFSPNGQFLV-SGDAGGGLFVWNAESGAEIFNSGQKGAIKQVFFAGQNPAFFALSDQQMALWNVPQKKISSQAQKPPTGFSAAALNPRQPGNFFAIGAPDGRMEVWDTKGSKLYTQR---GHTNAVTALTFAPNGEVIITGGQDRQVRVWQAS 305          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10477.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G633_ECTSI1.820e-3140.00WD40 domain containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KFW1_9PHAE1.330e-1841.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E7QLM1_9BACT9.200e-725.93GYF_2 domain-containing protein n=1 Tax=Verrucomic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 227..241
score: 34.71
coord: 99..113
score: 26.84
coord: 143..157
score: 28.25
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 201..240
e-value: 0.096
score: 21.8
coord: 117..156
e-value: 1.1E-4
score: 31.6
coord: 1..40
e-value: 8.8
score: 11.0
coord: 159..198
e-value: 9.1E-9
score: 45.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 160..198
e-value: 6.3E-7
score: 30.0
coord: 121..155
e-value: 6.4E-5
score: 23.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 208..249
score: 11.077
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 124..165
score: 13.483
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 166..198
score: 13.115
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 7..49
score: 9.406
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..257
e-value: 6.4E-40
score: 139.0
NoneNo IPR availablePANTHERPTHR19848WD40 REPEAT PROTEINcoord: 122..251
NoneNo IPR availablePANTHERPTHR19848:SF0NOTCHLESS HOMOLOG 1 (DROSOPHILA)coord: 8..213
NoneNo IPR availablePANTHERPTHR19848:SF0NOTCHLESS HOMOLOG 1 (DROSOPHILA)coord: 122..251
NoneNo IPR availablePANTHERPTHR19848WD40 REPEAT PROTEINcoord: 8..213
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 143..157
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 227..241
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 7..49
score: 9.283
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 99..249
score: 31.112
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 8..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10477contigC-tenellus_contig10477:216..4667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10477.1.1mRNA_C-tenellus_contig10477.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10477 216..4667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10477.1.1 ID=prot_C-tenellus_contig10477.1.1|Name=mRNA_C-tenellus_contig10477.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=258bp
MSEPVEAKGHSGEVIAVEYIPTLQLLVTSGAKEGCLRCWEIHSIQELQII
PNRRQGNASEPQVMLKWLSEGRAVSIRGPKPNAQGSGCQRDDQGFSNRLI
SGGASGGINIWEVSGNGLHITHHLTGHTDAVTAACIIPQPDIVVSGGMDA
DLRVWETSTRQCKRVLKGHSKGVSDIDYSPSQRIIVSAGFDHDILVWSPV
VGQVICQLTGHTCSLVGIGVSQVLSEMVSMSVDGVIKVWDTSNFKCVQTL
HAAQVET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf