prot_C-tenellus_contig10300.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10300.1.1
Unique Nameprot_C-tenellus_contig10300.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length40
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10300.1.1 vs. uniprot
Match: D8LBM3_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM3_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.860e-6
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 0 
Query:    1 MLGMMGVGGQYNFDPLNFAALSISMIGSFVYSWAKISKR 39
            ++GM+G+G  Y F+ LN A + +SM GSF+YSWAK+ KR
Sbjct:  329 VVGMLGMGDDYEFEALNCAGMVVSMGGSFLYSWAKVMKR 367
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10300.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBM3_ECTSI1.860e-653.85TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10300contigC-tenellus_contig10300:87..206 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10300.1.1mRNA_C-tenellus_contig10300.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10300 81..206 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10300.1.1 ID=prot_C-tenellus_contig10300.1.1|Name=mRNA_C-tenellus_contig10300.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=40bp
MLGMMGVGGQYNFDPLNFAALSISMIGSFVYSWAKISKR*
back to top