prot_C-tenellus_contig10238.4.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10238.4.1
Unique Nameprot_C-tenellus_contig10238.4.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length52
Homology
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BLAST of mRNA_C-tenellus_contig10238.4.1 vs. uniprot
Match: D7G152_ECTSI (Mcl1_mid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G152_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.360e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:    1 AACGEEPGVRVLRRSNIQSMVTLDEHDGGVKSLAWDPNGEFLATSGETG 49
            AAC EEPG+RV+RRSN   ++TL +  GGVKS+ WDP G+FLA SG  G
Sbjct:  127 AACSEEPGIRVVRRSNNSKVLTLTDMSGGVKSVDWDPRGDFLAASGFDG 175
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BLAST of mRNA_C-tenellus_contig10238.4.1 vs. uniprot
Match: A0A6H5KUW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.280e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:    1 AACGEEPGVRVLRRSNIQSMVTLDEHDGGVKSLAWDPNGEFLATSGETG 49
            AAC EEPG+RV+RRSN   ++TL +  GGVKS+ WDP G+FLA SG  G
Sbjct:  137 AACSEEPGIRVVRRSNNSKVLTLTDMSGGVKSVDWDPCGDFLAASGFDG 185
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10238.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G152_ECTSI3.360e-1261.22Mcl1_mid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KUW1_9PHAE8.280e-1261.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 11..49
e-value: 5.4E-6
score: 26.6
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..50
e-value: 9.0E-8
score: 33.2
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..51
score: 8.677
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10238contigC-tenellus_contig10238:5029..5184 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10238.4.1mRNA_C-tenellus_contig10238.4.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10238 5029..5184 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10238.4.1 ID=prot_C-tenellus_contig10238.4.1|Name=mRNA_C-tenellus_contig10238.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=52bp
AACGEEPGVRVLRRSNIQSMVTLDEHDGGVKSLAWDPNGEFLATSGETGE
D*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf