mRNA_C-tenellus_contig10238.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10238.4.1
Unique NamemRNA_C-tenellus_contig10238.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10238.4.1 vs. uniprot
Match: D7G152_ECTSI (Mcl1_mid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G152_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.360e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 AACGEEPGVRVLRRSNIQSMVTLDEHDGGVKSLAWDPNGEFLATSGETG 147
            AAC EEPG+RV+RRSN   ++TL +  GGVKS+ WDP G+FLA SG  G
Sbjct:  127 AACSEEPGIRVVRRSNNSKVLTLTDMSGGVKSVDWDPRGDFLAASGFDG 175
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BLAST of mRNA_C-tenellus_contig10238.4.1 vs. uniprot
Match: A0A6H5KUW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.280e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 AACGEEPGVRVLRRSNIQSMVTLDEHDGGVKSLAWDPNGEFLATSGETG 147
            AAC EEPG+RV+RRSN   ++TL +  GGVKS+ WDP G+FLA SG  G
Sbjct:  137 AACSEEPGIRVVRRSNNSKVLTLTDMSGGVKSVDWDPCGDFLAASGFDG 185
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10238.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G152_ECTSI3.360e-1261.22Mcl1_mid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KUW1_9PHAE8.280e-1261.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10238contigC-tenellus_contig10238:5029..5184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G152
Preferred nameWDHD1
PFAMsANAPC4_WD40,HMG_box,Mcl1_mid,WD40
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K11274
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000727,GO:0000775,GO:0000785,GO:0000790,GO:0000819,GO:0000981,GO:0001302,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022616,GO:0030702,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033260,GO:0033301,GO:0033554,GO:0033567,GO:0034085,GO:0034641,GO:0034645,GO:0035185,GO:0040029,GO:0042023,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043954,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045448,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0061641,GO:0065007,GO:0070013,GO:0070063,GO:0070827,GO:0070828,GO:0070829,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902679,GO:1902969,GO:1903047,GO:1903461,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue5.52e-13
EggNOG OGsKOG1274@1|root,KOG1274@2759|Eukaryota
Descriptionheterochromatin maintenance
Cds size156
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789122.7064762-CDS-C-tenellus_contig10238:5028..51841680789122.7064762-CDS-C-tenellus_contig10238:5028..5184Choristocarpus tenellus KU2346CDSC-tenellus_contig10238 5029..5184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10238.4.1prot_C-tenellus_contig10238.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10238 5029..5184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10238.4.1

>prot_C-tenellus_contig10238.4.1 ID=prot_C-tenellus_contig10238.4.1|Name=mRNA_C-tenellus_contig10238.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=52bp
AACGEEPGVRVLRRSNIQSMVTLDEHDGGVKSLAWDPNGEFLATSGETGE
D*
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mRNA from alignment at C-tenellus_contig10238:5029..5184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10238.4.1 ID=mRNA_C-tenellus_contig10238.4.1|Name=mRNA_C-tenellus_contig10238.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=156bp|location=Sequence derived from alignment at C-tenellus_contig10238:5029..5184+ (Choristocarpus tenellus KU2346)
GCGGCGTGTGGGGAGGAGCCTGGGGTACGTGTCCTTCGTAGAAGCAACAT
TCAGAGCATGGTCACTCTTGATGAACACGATGGCGGGGTCAAAAGCCTCG
CCTGGGACCCAAACGGAGAGTTCCTGGCAACCTCTGGTGAGACAGGAGAG
GACTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10238:5029..5184+

>mRNA_C-tenellus_contig10238.4.1 ID=mRNA_C-tenellus_contig10238.4.1|Name=mRNA_C-tenellus_contig10238.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=156bp|location=Sequence derived from alignment at C-tenellus_contig10238:5029..5184+ (Choristocarpus tenellus KU2346)
GCGGCGTGTGGGGAGGAGCCTGGGGTACGTGTCCTTCGTAGAAGCAACAT
TCAGAGCATGGTCACTCTTGATGAACACGATGGCGGGGTCAAAAGCCTCG
CCTGGGACCCAAACGGAGAGTTCCTGGCAACCTCTGGTGAGACAGGAGAG
GACTGA
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