prot_C-tenellus_contig10011.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10011.1.1
Unique Nameprot_C-tenellus_contig10011.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length305
Homology
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BLAST of mRNA_C-tenellus_contig10011.1.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.200e-19
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 0 
Query:  108 VTGPSEMRSALGLGLGSGDGFDGNGKVDAATRCRNNSEVPLHELESQRSLDTLFVLMESGHGIGRLVWELLMKMPTNQQLLEQLQSIG--TGPSGGADEHIC--------PLFQLLNASASRLLYSLMTVDALLSQDIT 236
             + P E  S+ G+  G+G G   +  V+   +    SE+PL ELE Q ++DTLF LMESG  +  LVW+LLMKMPTN +L     SIG  TGP+    EH          PL  L +AS+SRLLYSLM V+ LLS+D++
Sbjct:  613 ASSPVEEVSSAGVVAGNGGG---SVVVEGCMKVTPPSELPLLELEKQSTVDTLFELMESGQSVSVLVWDLLMKMPTNMRLFNGFLSIGLTTGPTIARQEHAAAAAAVEGGPLSLLQDASSSRLLYSLMIVEHLLSRDMS 748
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BLAST of mRNA_C-tenellus_contig10011.1.1 vs. uniprot
Match: A0A6H5KFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.300e-18
Identity = 64/137 (46.72%), Postives = 82/137 (59.85%), Query Frame = 0 
Query:  111 PSEMRSALGLGLGSGDGFDGNGKVDAATRCRNNSEVPLHELESQRSLDTLFVLMESGHGIGRLVWELLMKMPTNQQLLEQLQSIG--TGPSGGADEHIC---------PLFQLLNASASRLLYSLMTVDALLSQDIT 236
            P EM SA   G+ +G+G  G+  V+   +    SE+PL ELE Q ++DTLF LMESG  +  LVW+LLMKMPTN +L     SIG  TG +     H           PL  L +AS+SRLLYSLM V+ LLS+DI+
Sbjct: 1847 PVEMSSA---GVVAGNG-GGSVVVEGCMKATPPSELPLLELEKQSTVDTLFELMESGQSVSVLVWDLLMKMPTNMRLFNGFLSIGLTTGSTIARQGHAAAAAAAVEGGPLSLLQDASSSRLLYSLMIVEHLLSRDIS 1979
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10011.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK75_ECTSI1.200e-1945.32Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFW4_9PHAE4.300e-1846.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..97
NoneNo IPR availableCDDcd17039Ubl_ubiquitin_likecoord: 4..39
e-value: 0.00268633
score: 33.7238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10011contigC-tenellus_contig10011:1677..5568 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10011.1.1mRNA_C-tenellus_contig10011.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10011 1677..5570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10011.1.1 ID=prot_C-tenellus_contig10011.1.1|Name=mRNA_C-tenellus_contig10011.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=305bp
QLGLGAGSHKFRLLYAGRELSRDDRTLQEEDVKDSVTIQAAGCRPQQPGA
DQTNFQTQSLPNTTALATASSAFSAPGRQENDHDSRVTSDPRAMEVDKDS
NVEDGLPVTGPSEMRSALGLGLGSGDGFDGNGKVDAATRCRNNSEVPLHE
LESQRSLDTLFVLMESGHGIGRLVWELLMKMPTNQQLLEQLQSIGTGPSG
GADEHICPLFQLLNASASRLLYSLMTVDALLSQDITPVSPDARDAAVAQG
IAAAATRAKHMGSGAVSSSPVAETQGVGEVRRVDGVGCYGVDFPVEESTK
EPVGE
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