mRNA_C-tenellus_contig10011.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10011.1.1
Unique NamemRNA_C-tenellus_contig10011.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10011.1.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.200e-19
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 1 
Query:  322 VTGPSEMRSALGLGLGSGDGFDGNGKVDAATRCRNNSEVPLHELESQRSLDTLFVLMESGHGIGRLVWELLMKMPTNQQLLEQLQSIG--TGPSGGADEHIC--------PLFQLLNASASRLLYSLMTVDALLSQDIT 708
             + P E  S+ G+  G+G G   +  V+   +    SE+PL ELE Q ++DTLF LMESG  +  LVW+LLMKMPTN +L     SIG  TGP+    EH          PL  L +AS+SRLLYSLM V+ LLS+D++
Sbjct:  613 ASSPVEEVSSAGVVAGNGGG---SVVVEGCMKVTPPSELPLLELEKQSTVDTLFELMESGQSVSVLVWDLLMKMPTNMRLFNGFLSIGLTTGPTIARQEHAAAAAAVEGGPLSLLQDASSSRLLYSLMIVEHLLSRDMS 748
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BLAST of mRNA_C-tenellus_contig10011.1.1 vs. uniprot
Match: A0A6H5KFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.300e-18
Identity = 64/137 (46.72%), Postives = 82/137 (59.85%), Query Frame = 1 
Query:  331 PSEMRSALGLGLGSGDGFDGNGKVDAATRCRNNSEVPLHELESQRSLDTLFVLMESGHGIGRLVWELLMKMPTNQQLLEQLQSIG--TGPSGGADEHIC---------PLFQLLNASASRLLYSLMTVDALLSQDIT 708
            P EM SA   G+ +G+G  G+  V+   +    SE+PL ELE Q ++DTLF LMESG  +  LVW+LLMKMPTN +L     SIG  TG +     H           PL  L +AS+SRLLYSLM V+ LLS+DI+
Sbjct: 1847 PVEMSSA---GVVAGNG-GGSVVVEGCMKATPPSELPLLELEKQSTVDTLFELMESGQSVSVLVWDLLMKMPTNMRLFNGFLSIGLTTGSTIARQGHAAAAAAAVEGGPLSLLQDASSSRLLYSLMIVEHLLSRDIS 1979
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK75_ECTSI1.200e-1945.32Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFW4_9PHAE4.300e-1846.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10011contigC-tenellus_contig10011:1677..5570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FK75
PFAMsUCH
Model size918
Max annot lvl2759|Eukaryota
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.96e-20
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size915
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789110.2368226-CDS-C-tenellus_contig10011:1676..17601680789110.2368226-CDS-C-tenellus_contig10011:1676..1760Choristocarpus tenellus KU2346CDSC-tenellus_contig10011 1677..1760 +
1680789110.2570443-CDS-C-tenellus_contig10011:2333..24171680789110.2570443-CDS-C-tenellus_contig10011:2333..2417Choristocarpus tenellus KU2346CDSC-tenellus_contig10011 2334..2417 +
1680789110.2669463-CDS-C-tenellus_contig10011:3215..36221680789110.2669463-CDS-C-tenellus_contig10011:3215..3622Choristocarpus tenellus KU2346CDSC-tenellus_contig10011 3216..3622 +
1680789110.2755182-CDS-C-tenellus_contig10011:5228..55681680789110.2755182-CDS-C-tenellus_contig10011:5228..5568Choristocarpus tenellus KU2346CDSC-tenellus_contig10011 5229..5568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10011.1.1prot_C-tenellus_contig10011.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10011 1677..5568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10011.1.1

>prot_C-tenellus_contig10011.1.1 ID=prot_C-tenellus_contig10011.1.1|Name=mRNA_C-tenellus_contig10011.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=305bp
QLGLGAGSHKFRLLYAGRELSRDDRTLQEEDVKDSVTIQAAGCRPQQPGA
DQTNFQTQSLPNTTALATASSAFSAPGRQENDHDSRVTSDPRAMEVDKDS
NVEDGLPVTGPSEMRSALGLGLGSGDGFDGNGKVDAATRCRNNSEVPLHE
LESQRSLDTLFVLMESGHGIGRLVWELLMKMPTNQQLLEQLQSIGTGPSG
GADEHICPLFQLLNASASRLLYSLMTVDALLSQDITPVSPDARDAAVAQG
IAAAATRAKHMGSGAVSSSPVAETQGVGEVRRVDGVGCYGVDFPVEESTK
EPVGE
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mRNA from alignment at C-tenellus_contig10011:1677..5570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10011.1.1 ID=mRNA_C-tenellus_contig10011.1.1|Name=mRNA_C-tenellus_contig10011.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3894bp|location=Sequence derived from alignment at C-tenellus_contig10011:1677..5570+ (Choristocarpus tenellus KU2346)
CAGCTTGGATTGGGTGCTGGGTCTCACAAGTTTCGACTGTTATATGCTGG
GCGCGAGCTTAGCAGGGATGACCGGACTCTCCAGGTGTGTTTGTCTGTGT
GAACTGGATTGTTGCTCTTGAAGCGTTCTGTTGATATGTTGGTATGTTTG
TACGATATACTGGTCAGGGCTAGCACGTGATTTTTAAGCATTTATGTTAG
CTTTGATTAGGGTTAGGGTTACATCTTTTGTAGTTGTGTGCTACCTTAGT
TAAGTGCATGCATGCGCTGTGTGCTTCATGTTTCAAGTTATTTGGAACTT
GAATAATGATTGTTTCGATTATCCCCTTGATATTTTTGTTATTATTATTA
TTATTTTTTTAAATTGTTATATTGATATTATTGTTATTTTTATTATTTAT
TATTGTTATTTTTTATTATTATTATTATATTGATATTATTGTTATTGTTA
TTATTTAATATTATTATTATTTTTGTTATTATTCACGTTTGTTTCTAGAT
GAGATCGAGTTCAATGCACTCCTTTTCCAAATATTTAAACATGCCTGTGT
CCCGCCATGTAACTTAGGGTTAGGGTTCTGGTGTTGTATAAATTATGGCG
TTCTGATGAGATGGTAGTTTTTTTCAATATATATATATATATCTTTGCTG
TGTACAGGAGGAAGATGTCAAAGATAGCGTTACTATTCAGGCAGCCGGGT
GCAGACCACAGCAGCCGGGTGCAGACCAGACGAATTTTCAGGTACATTGG
TATATACCCTTATTTGGCAAATTTGGTTTTGATACGAAAATTAATAAATG
TCCTAGCCCTAACCCTCTTTCGTAGGTCGTAAGAATAAGAAATGGAATAA
AAAAAAATTCTGTTGATGGATAATTTTTCAGTGGGGAATGTAAAAATTTA
CTTATCTTTACTTCTTTTTTTTGGTAAGTAATCAGAACTGGCAATTTGTG
TGTAAAAAATGTTCTCTATAAAATGTTCTATACAACCTTTAATTACTTTT
TTGTGTGATATTCAATGAAATACAAAACTGCCGTAAATGATGAGCTTAGG
AGCATACTAACCCTAACCCTAACCCTAACCCTTGTTTGACTAGGTACACA
CTACTGCTACTAGAGGTAGAGTTAGGGGTGGGTAGTATGCTGGTTTGTTG
TTATGGTAACCTAGCAGGAGATGTAGGCATGGAGGGAAGGGGGTACGATG
GGCAGGACTCAAGGGTATTTTGACAACCAGACTTCATCATGGATTGCACC
ACCTTGATGGGCGTTATCAATGATCCCTCTTGGAAGATCTCGAAAGCGCT
TGTTTGGCAATTTTTTTTGTTCTTAGGACAGATTCCTTCAGATAAAAAAT
GAAATCACAAACTTTGCCTTTGATTCTTATTGTACCTTTTTTTGACACGG
GCTGGCTATACCTTGTTTGACACCATCTGCCAACTGACTACACATTTCAA
CATTCAACTGAACTTTAGTGTTCACCTATTGTTGGTATTTTCCTATTTAT
AATGTTTATCCCGAACTGTTGCTGTGACTCTGTGGCCAGACCCAGAGCCT
TCCCAACACCACAGCCTTGGCCACCGCCTCCAGTGCTTTCTCAGCACCTG
GGAGACAAGAAAATGACCATGACAGTAGGGTTACCTCAGACCCCAGAGCC
ATGGAGGTGGACAAGGATAGCAATGTTGAAGATGGCTTGCCAGTGACAGG
ACCTTCGGAAATGAGATCAGCATTAGGGTTAGGGTTAGGGTCTGGGGATG
GTTTTGATGGAAATGGGAAGGTGGATGCGGCTACGAGGTGTAGGAATAAT
AGTGAAGTTCCCCTGCATGAGCTGGAGAGTCAAAGGAGTTTAGATACACT
GTTTGTGTTGATGGAGTCAGGTCATGGGATTGGAAGGCTGGTCTGGGAGC
TCCTGATGAAGATGCCCACTAATCAGCAGTTGCTTGAACAACTTCAGTGA
GTGGTTTGGTTTGGGGTTGAGGTTGGGGTTGGGGTTGGGTTGTTGGGGTT
AGGGTTTTAGTGCTCTGTTGCTTAGATATGATATTATTAGTACTACATGT
GGAAGTTGTAGGATGTACTTGGTAATAGTGTTTGGGGGGTTTTGGTTAGG
GTTTTGGTTTTTGTTTAGACATCATAGTACCTAGGGTTAGGGCTAACGGT
TCTTGAACATCTTCACAGAGTGGTTTTGGGGTGTTAAGGTTAGGTCTTAG
TGCTCTGTTGCTCACACATGGTTTCGTTAGTACTAGATACAGAAGCTGTG
GGATACACTTGAAAATTATGTTTGGTTGAAGGTTGGAGTTTTTGTTATTT
GTTTACCTAGCCTGTAGTACCTAAGGTTAGGGCTAGGAAGTGCGTGAGTT
CTAAGCTACAACCCTAACCCTAAACCCAATGTTTTGGGTTTTTGTAACCC
TAACCCTGAACTGCACTTCTTGTGGAATTTGGTTTGTCATCTTCCCTTCC
CCAGCCCTTTTTCTATACTTCAGCCAGCAGGTGTGTACTCAAATACACGC
CTCCCTTTCACATCCAAAACCATCCCTGACCAATTCTCACGCATCACCCC
TTTTTTTATTCAAGTCATTCCAGATATATGCCGATGTCATTATACAATAA
GGGTTAGGGTTAGGGTTAGGTTTGGTGAACCTCTAACCCTACTCTTGTAG
CATTGATTTACTCTCCCCCCACCCTCGAGGGAGTGTTAGGGTTAGGGTAA
GGTTTGAACCCGGGTGGGCAAGGAACCGTTATTTATTGTGTTGGATACAA
TGGTTCACGCCCAATGTTCAGGATGCCCCACAAGAAACTTCCTGAAATGT
TTCCTGCTTGGAGTTCTGTTGTCAGGTGACGAGACTCAAAGTACACCTGT
AGTGTATTCCCAGTTCTACTTGCTCAATTTGTAAAGATTGGGTGTTTGGT
GTTTGTCCTGGATGAGTGTTGTTTACTTCTTTTTTTATTTTTTTTTCTGT
CCTGGACAAAAATAAAAAAAATAATGTTATCATTCAAACTTTCCGAGACC
CACATAAAGGAGCTGTTGTGAATGACTGAGAAAGTACATGTGTTGGTCTT
CGTTACTAACCCTAACCCTAACCTTTTGATTTTGAGCTTTTTACCTTTGA
AGGTTCAGAATTAATATCATATTATTATTATATTCTATTATTTTTTTTAT
TAGTATTTAGTATTTTCCTGTTGCGTGAAATTCAGGAACATTATTATTCT
TCTGTTTTGACGGTCACTGAAGAGGAGCTGGGGGTAGAGCTCATTTTTGT
GGGGAACCTTGGAGGTTAGGGTTAGGGCACCTTGGAGGCTTGTGGGAGAC
GTTCGTCGTGGTCAATGGTAAATGTGTTGTCTGTGTGAGGTATTTGCCTG
TGAAACACCTTCAACTTCTTTCAGCATCTAACTAACCTCAACCCTAACCC
TACCCTAACCCAACACAAAGGTGAGCAATAATGTTACCTCTGCAAGAGCT
GCGATGCTTTTTGAAATGAAAGTGGTTCCTTCATTGAAGAATTAGCATAA
TCCATAGTTTAAAGAATTTTGACAAAATTTAACTTTCAAAAACCAACTGC
AGGTCAATCGGAACAGGTCCCTCTGGAGGTGCAGATGAGCATATCTGCCC
TCTCTTCCAGCTCCTCAATGCCTCTGCAAGCCGGTTGCTGTACTCTCTCA
TGACTGTGGATGCTCTGCTCTCTCAGGACATAACCCCAGTTTCTCCTGAC
GCTCGGGATGCTGCCGTGGCCCAGGGCATCGCCGCGGCAGCTACCAGGGC
AAAACATATGGGCTCTGGGGCAGTAAGTTCCTCGCCTGTGGCTGAGACAC
AAGGCGTGGGGGAAGTAAGGCGAGTTGATGGAGTGGGCTGCTATGGTGTT
GATTTTCCAGTAGAAGAGAGTACAAAAGAGCCAGTGGGTGAAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig10011:1677..5570+

>mRNA_C-tenellus_contig10011.1.1 ID=mRNA_C-tenellus_contig10011.1.1|Name=mRNA_C-tenellus_contig10011.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=915bp|location=Sequence derived from alignment at C-tenellus_contig10011:1677..5570+ (Choristocarpus tenellus KU2346)
CAGCTTGGATTGGGTGCTGGGTCTCACAAGTTTCGACTGTTATATGCTGG
GCGCGAGCTTAGCAGGGATGACCGGACTCTCCAGGAGGAAGATGTCAAAG
ATAGCGTTACTATTCAGGCAGCCGGGTGCAGACCACAGCAGCCGGGTGCA
GACCAGACGAATTTTCAGACCCAGAGCCTTCCCAACACCACAGCCTTGGC
CACCGCCTCCAGTGCTTTCTCAGCACCTGGGAGACAAGAAAATGACCATG
ACAGTAGGGTTACCTCAGACCCCAGAGCCATGGAGGTGGACAAGGATAGC
AATGTTGAAGATGGCTTGCCAGTGACAGGACCTTCGGAAATGAGATCAGC
ATTAGGGTTAGGGTTAGGGTCTGGGGATGGTTTTGATGGAAATGGGAAGG
TGGATGCGGCTACGAGGTGTAGGAATAATAGTGAAGTTCCCCTGCATGAG
CTGGAGAGTCAAAGGAGTTTAGATACACTGTTTGTGTTGATGGAGTCAGG
TCATGGGATTGGAAGGCTGGTCTGGGAGCTCCTGATGAAGATGCCCACTA
ATCAGCAGTTGCTTGAACAACTTCAGTCAATCGGAACAGGTCCCTCTGGA
GGTGCAGATGAGCATATCTGCCCTCTCTTCCAGCTCCTCAATGCCTCTGC
AAGCCGGTTGCTGTACTCTCTCATGACTGTGGATGCTCTGCTCTCTCAGG
ACATAACCCCAGTTTCTCCTGACGCTCGGGATGCTGCCGTGGCCCAGGGC
ATCGCCGCGGCAGCTACCAGGGCAAAACATATGGGCTCTGGGGCAGTAAG
TTCCTCGCCTGTGGCTGAGACACAAGGCGTGGGGGAAGTAAGGCGAGTTG
ATGGAGTGGGCTGCTATGGTGTTGATTTTCCAGTAGAAGAGAGTACAAAA
GAGCCAGTGGGTGAA
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