mRNA_C-tenellus_contig9982.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9982.2.1
Unique NamemRNA_C-tenellus_contig9982.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9982.2.1 vs. uniprot
Match: D7FSS9_ECTSI (UDENN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSS9_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.420e-59
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = 1 
Query:    1 GKPRPKAYLSISEYLRKAGPHKTLNNYYRNIYSTHPSVASSANGDDEDTDELAQGMINAAKARHGRLETLRFLANKAQTGGEEGGIGTCVGERLGCLMLHLAAENGRENVVRYLADELWVDIDACTVRGMTALHYATKVH 420
            G PRPKAYLSI EYLRKAG  KT+N YY  I STHPSVA S +GD ED DELAQGMI AA+  HG LETLRFLA KAQTGGEEGG+GTC+GER+GCLMLHLAAE G + +V YL ++LWVD+D  TVRGMTALHYA K +
Sbjct:    6 GNPRPKAYLSIGEYLRKAGAFKTVNVYYNEIISTHPSVALSEDGDTEDVDELAQGMIEAAQ--HGHLETLRFLAGKAQTGGEEGGVGTCIGERVGCLMLHLAAEAGHDTIVHYLVEDLWVDVDEATVRGMTALHYAAKAN 143
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BLAST of mRNA_C-tenellus_contig9982.2.1 vs. uniprot
Match: A0A835YRB3_9STRA (AEX-3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.260e-18
Identity = 55/110 (50.00%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:   16 KAYLSISEYLRKAGPHKTLNNYYRNIYSTHPSVASSANGDDEDTDELAQGMINAAKARHGRLETLRFLANKAQTGGEEGGIGTCVGERLGCLMLHLAAENGRENVVRYLA 345
            KAYLSISEYLRKAGP KT+N YYRNI STHPS+  S  GDDE  DE+AQ MI+AA    G +E L+FL  +      +  +        G    H AA+  R  V+R LA
Sbjct:   27 KAYLSISEYLRKAGPFKTVNVYYRNIISTHPSLTHSETGDDEAIDEVAQRMIDAAMG--GDVELLKFLVGQVHYLVSDLWVDCDACTTRGMTAAHYAAKANRVAVLRELA 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9982.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSS9_ECTSI1.420e-5972.86UDENN domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YRB3_9STRA7.260e-1850.00AEX-3 domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9982contigC-tenellus_contig9982:2580..5093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSS9
PFAMsAnk_2,DENN,PGG,RGS
Model size420
Max annot lvl2759|Eukaryota
KEGG koko:K20161,ko:K20164
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.33e-60
EggNOG OGsCOG0666@1|root,KOG2127@1|root,KOG0504@2759|Eukaryota,KOG2080@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size420
COG categoryT
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.9177818-CDS-C-tenellus_contig9982:2579..26561680790209.9177818-CDS-C-tenellus_contig9982:2579..2656Choristocarpus tenellus KU2346CDSC-tenellus_contig9982 2580..2656 +
1680790209.9288268-CDS-C-tenellus_contig9982:2890..30021680790209.9288268-CDS-C-tenellus_contig9982:2890..3002Choristocarpus tenellus KU2346CDSC-tenellus_contig9982 2891..3002 +
1680790209.939127-CDS-C-tenellus_contig9982:3425..35551680790209.939127-CDS-C-tenellus_contig9982:3425..3555Choristocarpus tenellus KU2346CDSC-tenellus_contig9982 3426..3555 +
1680790209.9544134-CDS-C-tenellus_contig9982:4992..50931680790209.9544134-CDS-C-tenellus_contig9982:4992..5093Choristocarpus tenellus KU2346CDSC-tenellus_contig9982 4993..5093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9982.2.1prot_C-tenellus_contig9982.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9982 2580..5093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9982.2.1

>prot_C-tenellus_contig9982.2.1 ID=prot_C-tenellus_contig9982.2.1|Name=mRNA_C-tenellus_contig9982.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=140bp
GKPRPKAYLSISEYLRKAGPHKTLNNYYRNIYSTHPSVASSANGDDEDTD
ELAQGMINAAKARHGRLETLRFLANKAQTGGEEGGIGTCVGERLGCLMLH
LAAENGRENVVRYLADELWVDIDACTVRGMTALHYATKVH
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mRNA from alignment at C-tenellus_contig9982:2580..5093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9982.2.1 ID=mRNA_C-tenellus_contig9982.2.1|Name=mRNA_C-tenellus_contig9982.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2514bp|location=Sequence derived from alignment at C-tenellus_contig9982:2580..5093+ (Choristocarpus tenellus KU2346)
GGCAAGCCGAGGCCAAAGGCATACCTTTCGATCTCGGAGTACCTTCGGAA
GGCAGGACCCCATAAAACTCTCAATAAGTGGGTTTTTCTATACTTCTTTT
TCGTATTCCCAGCTTCAGTTTATTCTTTCAAATGCTTGATCTGTTCAGTC
TCCTCCACATAGATATGCCTCCATCTCACATTTACGTTGCAATAAGAAGG
TAGGATGAAGTCTTAGGGCAATATAGGGTTGACTCCGATGGTGTCTCCTT
TTTGTTTGGTGTACTCAGCCTAACCTCCTTGGGTGTCGCCCACTGCCATG
ATCGGGCACAGTTACTACCGGAATATCTACAGCACACACCCAAGCGTTGC
TTCGAGCGCTAACGGTGATGATGAAGATACAGACGAATTGGCTCAGGGAA
TGATCAATGCTGCCAAGGCAAGAGTCAGAAGATGCTCGGAGTACCATGAT
GTTCACCTCACTTTCGAATCATTTCCCTTTCCACACCTAAGGTTTTGTGC
GCATTTTGCTCTTCCCCCTACCAAATATAAATCACAGGGTTGAAGTCCCC
GAGGTTACGCAGTGCCCACTTCGATCTCATTGTGACAACCCCGTGGCCCT
ATATCTGGAAACTGAGGGGCCACCGTTTTATTATAATCATTTTTTTTTTC
GGCACACTGTACCTATGTGCCTACATCAAGCATTTACTTCGTGTCCTTGA
TGTCCATTGTAGGGCCTCCTCCCGTCCATTGCTCCCTCTCTCTCTGACCT
ACTCTGCAGGAACTCTGACTGGAGTACTGTACTGTTCAGTAGTATACTAT
TGATCTTCCCGATCTGTTACATCTATTGCATCGTTTTTGCACGCAGCATG
GGCGTCTTGAAACCTTGCGTTTCCTAGCCAACAAGGCACAGACAGGGGGC
GAGGAGGGGGGTATTGGTACCTGTGTTGGGGAGCGGCTTGGGTGTCTTAT
GCTCCACCTGGCAGCAGAGAATGGACGTGAGCTAAGAAGAGTCTTTTGTA
TCCAAACCAACCGAAGATTTTTTTTTAACACATTTTGGACAGAGTGGGGG
GGGGAGGGGAAGTTATAGATAGTGTTGAGGGTCAAAGGTGAAGAGAGGGA
AGTGTTAAGGAGAAAAGAATAGTGCATACTTCTCCACACATGCTATTCTA
GTATATTCTTTCATGTGCCAGGGAGGGTCTTTTCATACTTTGTTGTATCA
ACACTGCACAACACAGTCTTGAGGGTTAGGATTCGAAGAGACTTTGTCTG
CAAGATTTAGATGAGATACACAACCCATGTGGAGCCCAAAACACACAATT
TTGGAGATTCTTATCTCTCTTGTTTGTGTGTCAGGTGTTGCAGGGAATGA
TGGGTTGAAATATCTACTTTGAAATGTGCATGGAAGCAAGTAGTCAGCCT
GGTAGAGCATAGGACACATTGGTGTGAATAGATTGGATATTAAATCAGGG
CTGTAAACTGTGGTACCATGCTTAAGAAATCTACCACAGCACTATCTGGT
GCGATAGTAGTTACAACATTTAATTCAGAGAGTTACAGTGTTTTTAGGGG
TGAAAAAATGCATGATATAAGATGGGCATCCATTGGCTTCTGAAGTGGGG
ATGCTTTCATAACCTGTCTTATCAATAATGACAAATGTGCATGGAGACAA
CTTGCATAGTATTCATGCCCCCCACCTCTCCAGCCCTGTCCCCTGTGAAT
TTGTTACTCCAAATGCTGACTCTGTTGTGAGTTAATCCTGTAACACCATG
TCCCTGATTGCTGTGTGTGTAGATGTTTTTTTGTTTGTCGTGGTTGTTAT
GCCAAGATGTGTATGTCTTGGTGTGTTCTATCGGCATTTTGTCGTAATAT
GATTGAAGACACGTTGATGCTTGTGGTTCAAATGGATACACTCGTGTACT
GCTTGCTGAAGTTTAGTTTAGGGCTAGAGCTCTTGCTATGTTATGCCTTT
GTTTGCCTGCACTTTGCACGTCAGTGTTAGGGTCACCATTTAAGGGGATT
TGCCAACAGCGAGGTGTAGAAAAGGTGTAGCTGCCATGACCTATACTGCC
TAACAGGTTAACTTATAAATTAGAGTATGGACTGTACTTCCAAAAAGATG
TAGACAGAGGGATGCCTTAACTCCTTGGTACTGATGGCAATGTGGTCTGA
TCCCGACCAACACACCGCATAAAGCTTGCTGCGGCATGGCGGCAACTCTG
GCCTGTTGTACCTTGCCCCACTCAGACCACCACGAACCTTGTCCTTACAC
CTTGAAGTTCCAGCAGTGCCAATAGTGTGGTTTGGGTATCATGGGATGTT
TGCATTCAACTCTTTTTCCTACTGCTGTGTGTGTGTGTGTATGTGTGTGT
GTGTGTGTGTTTGTCATCGGTTGTGGTGGTGGCTGTTGTTGCGTGGGTGA
TACTTATTACCAGGAGAGAATGTAGTCAGGTACCTGGCAGATGAGCTTTG
GGTGGATATTGACGCCTGCACTGTGAGAGGAATGACAGCCCTGCACTACG
CAACCAAGGTACAT
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Coding sequence (CDS) from alignment at C-tenellus_contig9982:2580..5093+

>mRNA_C-tenellus_contig9982.2.1 ID=mRNA_C-tenellus_contig9982.2.1|Name=mRNA_C-tenellus_contig9982.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=420bp|location=Sequence derived from alignment at C-tenellus_contig9982:2580..5093+ (Choristocarpus tenellus KU2346)
GGCAAGCCGAGGCCAAAGGCATACCTTTCGATCTCGGAGTACCTTCGGAA
GGCAGGACCCCATAAAACTCTCAATAATTACTACCGGAATATCTACAGCA
CACACCCAAGCGTTGCTTCGAGCGCTAACGGTGATGATGAAGATACAGAC
GAATTGGCTCAGGGAATGATCAATGCTGCCAAGGCAAGACATGGGCGTCT
TGAAACCTTGCGTTTCCTAGCCAACAAGGCACAGACAGGGGGCGAGGAGG
GGGGTATTGGTACCTGTGTTGGGGAGCGGCTTGGGTGTCTTATGCTCCAC
CTGGCAGCAGAGAATGGACGAGAGAATGTAGTCAGGTACCTGGCAGATGA
GCTTTGGGTGGATATTGACGCCTGCACTGTGAGAGGAATGACAGCCCTGC
ACTACGCAACCAAGGTACAT
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