mRNA_C-tenellus_contig9979.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9979.1.1
Unique NamemRNA_C-tenellus_contig9979.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: A0A7S4IUX6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IUX6_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.670e-8
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  431 SLLPLEQD-MKPSLLEEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDILYGQTT 715
            SLL +E + +   +LE+ + +I+ A+ NG GCLVHC  G SRSCS+VL Y +     +SL  AL   +  R+   P+  F+ +L +  D    +TT
Sbjct:  127 SLLDVEDEALNKDVLEKCFAYINEAKANGGGCLVHCNAGVSRSCSVVLAYRLMNEPNLSLEDALTELKQTRKSAKPNAGFMVQLKKLADERNNKTT 222          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: UPI001C3629B3 (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C3629B3)

HSP 1 Score: 65.1 bits (157), Expect = 2.300e-8
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  446 EQDMKPSLLEEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDIL 700
            + DMK     E +  ID A+R G+G LVHC  G SRS ++V+ YLM+   GMSLL ALE  + +R +  P+  F+ +L E+E  L
Sbjct:  102 DTDMK-QYFTECFDFIDEAKRLGSGVLVHCVAGKSRSVTIVVAYLMKK-HGMSLLKALEHVKSRRSKAAPNSGFVSQLREFEKSL 184          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: UPI001C352C39 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C352C39)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-8
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  446 EQDMKPSLLEEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDIL 700
            + DMK     E +  ID A+R G+G LVHC  G SRS ++V+ YLM+   GMSLL ALE  + +R +  P+  F+ +L E+E  L
Sbjct:  116 DTDMK-QYFTECFDFIDEAKRLGSGVLVHCVAGKSRSVTIVVAYLMKK-HGMSLLKALEHVKSRRSKAAPNSGFVSQLREFEKSL 198          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: A0A2P6TV89_CHLSO (Sorbosone dehydrogenase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TV89_CHLSO)

HSP 1 Score: 63.2 bits (152), Expect = 2.070e-6
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  446 EQDMKPSLLEEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDILYGQTTVSL 724
            E+D+ P L  +A   ID    +G G LVHC  G SRSCSLVL +LM       L  A+EF +  R +  P+  +L+ L + E+ L+G+ TV +
Sbjct: 1758 EEDLAPHL-PDAAAFIDTGLASGGGVLVHCHAGKSRSCSLVLAWLMTRRR-WPLNRAMEFLRRMRPEAEPNAGYLKALLQLEEELFGRQTVKM 1848          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: A0A3N0YG79_ANAGA (Putative rhodanese domain-containing dual specificity protein phosphatase n=9 Tax=Otophysi TaxID=186626 RepID=A0A3N0YG79_ANAGA)

HSP 1 Score: 60.5 bits (145), Expect = 4.540e-6
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  446 EQDMKPSLLEEAYMHIDAARRNGTGC-----LVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDILYGQTTVSL 724
            +QD++ +L  EA   I  A R   G      LVHC  G SRS  L LG+LM+     SLL A  + + +R    P+  FLQ+LS+YE++L+GQ   SL
Sbjct:  232 QQDLRQAL-PEASRFIAKALRGAPGAPGGRVLVHCSLGRSRSSVLTLGFLME-HRRWSLLHAFRWLKERRACAAPNAGFLQQLSDYEELLFGQRLTSL 327          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: A0A7R9M5Z5_9ACAR (Protein-tyrosine-phosphatase n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9M5Z5_9ACAR)

HSP 1 Score: 57.4 bits (137), Expect = 9.390e-6
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  446 EQDMKPSLLEEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDILYGQTTVSL 724
            E D+ P + E A    D  +  G   +VHC  G SRSC+LVL YL++  + MSL  A   C+ +R    P+  F Q+L ++E  + G T+V +
Sbjct:   42 EDDLSPYMDEVADKLHDVTQHKGIA-IVHCVAGISRSCTLVLAYLIKHKQ-MSLKEAFLHCKSRRDMSQPNPSFFQQLIDFERKVRGNTSVRI 132          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: F0ZRJ0_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZRJ0_DICPU)

HSP 1 Score: 59.3 bits (142), Expect = 1.150e-5
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 2
Query:  473 EEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDIL 700
            E+ +  ID   +N  G L HC  G SRSC++++ YLM     ++L  +LE  +  R QC P++ F+++L  YE +L
Sbjct:  266 EKCFKFIDNQMKNEVGLLCHCNAGISRSCTIIIAYLMYKFN-IALSESLEIVKSSRPQCKPNQGFMKQLENYEVLL 340          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: A0A2R5GM72_9STRA (Dual specificity protein phosphatase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM72_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.310e-5
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  449 QDMKPSLLEEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDIL 700
            + + P LLE A M+I+ AR +   C VHC  G SRSC++V+ Y+M   +G +   A +  + KR  C+P+  F+ +L E++  L
Sbjct:  299 ESILPFLLE-AIMYIEKARTSSGSCFVHCHMGVSRSCTVVIAYMMWK-DGATFEEAFDVVKAKRPVCNPNAGFVAQLMEFQRYL 380          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: A0A6P8IUC6_ACTTE (Protein-tyrosine-phosphatase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IUC6_ACTTE)

HSP 1 Score: 58.2 bits (139), Expect = 3.180e-5
Identity = 33/98 (33.67%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  437 LPLEQDMKPSLLE---EAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDILYGQTTVS 721
            LP+E + K +L +   EA+  ID  R  G+G LVHC  G SRS ++ + YLM   + ++L  A +F + ++    P+  F+ +L E+E  +    T S
Sbjct:  260 LPVEDNCKANLTDLFPEAFSFIDEGREKGSGVLVHCLAGVSRSVTVTIAYLMS-SQNLTLNEAYDFVKARKSNVSPNFNFMGQLLEFERSINSPRTPS 356          
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Match: A0A6A2XKD5_HIBSY (Dual specificity protein phosphatase 1 n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XKD5_HIBSY)

HSP 1 Score: 55.8 bits (133), Expect = 3.600e-5
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  473 EEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMSLLAALEFCQGKRRQCHPDKFFLQKLSEYEDILYGQ 709
            +E +  ID ARR G+G LVHC  G SRS ++V+ +LM+   GM    ALE  + +R Q  P+   + +L  +E  L G+
Sbjct:   94 DECFGFIDEARRLGSGVLVHCFMGISRSATVVIAFLMKKN-GMRFSQALEHVKRRRPQVSPNPGCVLQLQHFESTLRGK 171          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9979.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S4IUX6_9EUKA1.670e-837.50Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
UPI001C3629B32.300e-843.53Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
UPI001C352C392.990e-843.53Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A2P6TV89_CHLSO2.070e-639.78Sorbosone dehydrogenase n=1 Tax=Chlorella sorokini... [more]
A0A3N0YG79_ANAGA4.540e-640.82Putative rhodanese domain-containing dual specific... [more]
A0A7R9M5Z5_9ACAR9.390e-636.56Protein-tyrosine-phosphatase n=1 Tax=Oppiella nova... [more]
F0ZRJ0_DICPU1.150e-536.84Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A2R5GM72_9STRA1.310e-536.90Dual specificity protein phosphatase n=1 Tax=Honda... [more]
A0A6P8IUC6_ACTTE3.180e-533.67Protein-tyrosine-phosphatase n=1 Tax=Actinia teneb... [more]
A0A6A2XKD5_HIBSY3.600e-539.24Dual specificity protein phosphatase 1 n=3 Tax=Hib... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9979contigC-tenellus_contig9979:692..4329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog126957.SMAR015089-PA
Preferred nameDUSP14
PFAMsDSPc
Model size2184
Max annot lvl2759|Eukaryota
KEGG koko:K04459,ko:K14165
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005759,GO:0006464,GO:0006470,GO:0006605,GO:0006612,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008138,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019866,GO:0019898,GO:0031090,GO:0031224,GO:0031300,GO:0031304,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0035335,GO:0035970,GO:0036211,GO:0042221,GO:0042578,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0046677,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0098573,GO:0140096,GO:1901564
Exons2
Evalue1.63e-12
EggNOG OGsCOG2453@1|root,KOG1718@2759|Eukaryota
EC3.1.3.16,3.1.3.48
Descriptionprotein tyrosine/serine/threonine phosphatase activity
Cds size522
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.7418027-UTR-C-tenellus_contig9979:691..18991680790209.7418027-UTR-C-tenellus_contig9979:691..1899Choristocarpus tenellus KU2346UTRC-tenellus_contig9979 692..1899 -
1680790209.7746632-UTR-C-tenellus_contig9979:3875..43291680790209.7746632-UTR-C-tenellus_contig9979:3875..4329Choristocarpus tenellus KU2346UTRC-tenellus_contig9979 3876..4329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.7534978-CDS-C-tenellus_contig9979:1899..22291680790209.7534978-CDS-C-tenellus_contig9979:1899..2229Choristocarpus tenellus KU2346CDSC-tenellus_contig9979 1900..2229 -
1680790209.7647913-CDS-C-tenellus_contig9979:3683..38751680790209.7647913-CDS-C-tenellus_contig9979:3683..3875Choristocarpus tenellus KU2346CDSC-tenellus_contig9979 3684..3875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9979.1.1prot_C-tenellus_contig9979.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9979 1900..3875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9979.1.1

>prot_C-tenellus_contig9979.1.1 ID=prot_C-tenellus_contig9979.1.1|Name=mRNA_C-tenellus_contig9979.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=174bp
MKPSLLEEAYMHIDAARRNGTGCLVHCEKGTSRSCSLVLGYLMQLGEGMS
LLAALEFCQGKRRQCHPDKFFLQKLSEYEDILYGQTTVSLHNYHRGDLAD
SLAVTNNAESPGEVATVASSIGASYDCVWSGEGRVSLEAIDPPGVDASEL
MMERIQPKSDGDPMDVSGMTNSA*
back to top

mRNA from alignment at C-tenellus_contig9979:692..4329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9979.1.1 ID=mRNA_C-tenellus_contig9979.1.1|Name=mRNA_C-tenellus_contig9979.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3638bp|location=Sequence derived from alignment at C-tenellus_contig9979:692..4329- (Choristocarpus tenellus KU2346)
GGTTAGGGTTAGGGTGCTTTTGGACAACAATTGTGTTCACACTTCTAATG TTCCCTAGTACGGTCACTCCCTCCAATGGGGGCTTAACTGCATCTCGGTC ATGGGCATAGAGTGTATTGCACATGGACTTCCAAGTCAAAAGGGACAAAA TCAATCCCCCACCCTCGTTGCTTTTGCTCTAATGTTGACCTCTTGGTGTT TGTTCGAAATCTGAGGAAGGCCCAGGGAGTTGCTTGAAAAATACTCCTAG TACAACAATAGATTATTTCCTGCACAAGTAGTGATCTGAATATACGTATG TATTGTTTGACCTCTTTCTACCATGTAGCGAAGGCGTGAGCACAAGTGAA GGACGAGTGAAACACACACACACCAAGTCATCAACACGCCCTCCCAATCA ACAAGAAAACCCACGCATATACCTTCATAATCTTTACTCCCCCTCGAACA GGACATGAAACCAAGCCTTTTAGAGGAGGCGTATATGCACATAGATGCAG CACGGCGAAATGGCACTGGCTGCCTGGTTCACTGTGAGAAGGGCACCAGT CGTTCATGTTCATTAGTCCTGGGCTACCTTATGCAGCTGGGAGAAGGGAT GTCGTTGCTGGCAGCTCTTGAGTTCTGTCAGGGCAAGCGTCGGCAGGTGG GTTTTTGGTGCAGCATTGGGGTGCTTGTTTTCATGCCTTGATAAAGTGTA GTTGGAGGGGCATTTTGAACTTTTTATGTGTGGAGGGAATGATCTAGGTG AAGGGACGGTCATCGCTGCCTGGAGGGACAGGAACTCTTGTATGTGAGAT TGAGAAGGCCTGTAAAAGCTTTGTGGGTAGTGTTCATTGTGTCGCGGGGG TTAGTTTGGATTGTCATTGCCGTTGTGCTTGCTGATGGACAGGAACCATT ATGGGAGATTTGGAGTATTTTGGAGGGGAGGAGGGTGCTTGACTTGTTTC ACGGTTTGCAATTGGATTTAATGCCTGTGTGTTAAGGAGTACAATACTCA CTTGTTTGTTCACTCTACTGTAGTGGAATAGCCTGTAGAGTTGTGCCATT CTTGAAGTCATTTACCTGCTCATTGGAGTACTTGCGTACCTCTTCAGTTG TGGCGTTTTTATCACTCTTGACTTCATGACCTGCATCTTTTACTTAGGTT GTAGGCACAGTATATACTGTTTCGCAGATGTTGGCAGCAGTCTACTTACA AATGTTTCTTTGCCACAATTGCTTACCACATCAATCCAAGAGATTACAGG TTCTCATTCCAACCCTGACAGGCCTCTACGTATCATCTGGTTGATGATAA TAGTTCCTCTGAAGAACAGTTAGCGCTTTCTATTTTTGATCGTGCAGAAA TTTCTCTCATCCAGAAATATTTTTGTGGATGGTACCTTAGTAGTGTACCT TGTTGTGGAAGTTTTCTTCCTCACGAAAACATGGTGGTCGTAGTTCCAAT GCTACACATTGCCAGGAGAGTTGGTCGATGGTCGATGGAATGACTGAACC CAACTAATGAAGAGGAAGACATGCACAGAGGTAGTGCTGTTGCATAGAGT AGTTGTTGAACCTCGAGATGATGGGTCAGGCTTGTCCAAGCTGACGAGCT AGTGGTTACTAATAGTAACGGGCTCTTGATAGGAGCAAATGTAATGTCCA AGCGGTGTACTAGTCAGGGAAATATCTGTACTAGATAGCACATCAGTGTG TGATATTGTGTTCAGTGGTATGATAAGCAACTAGAAGAGTGTAGTGTACA GGCGACTGGATTGGTGACTTCACTGCTCCAAGAGTTCGTCAGATATGATG AAATTACATTGACAGCTTAGGGGTCCCTGATTCTAGTGGAATTCTGATGA CAATCTACCTTCTGCGAATGGTAGACTACTTACTCCCCATCAATCTCTAC ACGCTGCTTCGTTTCGGCATGGCAAAAACTGCGAAGTGTGTGTTCAAATG TCTTCATTTGTCGCGGTCTTCAATTCACTGTTCCTATACGAAATGATGGC ATTGCATGCATGGTGCGCCACGCTTGACTCCCTCCTCAACTCAGGACACC CCATTGCCTTCCCAAATTTTTCCTCCTTTCTCCACGACGTTGCTGAACAG TGCCACCCAGATAAATTTTTCTTGCAGAAACTGTCGGAGTATGAGGACAT CCTTTACGGTCAGACAACGGTCTCCCTCCATAACTATCATCGTGGGGACC TAGCTGACAGTCTTGCTGTAACTAACAATGCTGAATCGCCAGGCGAAGTG GCGACTGTTGCATCAAGTATAGGAGCTAGTTATGATTGTGTTTGGTCGGG GGAGGGTCGGGTCTCCTTGGAGGCTATTGATCCTCCTGGGGTAGATGCGT CAGAGCTGATGATGGAAAGAATTCAGCCAAAATCGGATGGAGATCCGATG GATGTTTCAGGGATGACTAATAGTGCCTGACCAAGTTCATGTTGGTGTGT GTTGTCACTGTTACCCCCCTAGCGGTCTTAGCCCCTAGGTGATGTATACT GGTGGGTCCACAGTTGGTTGGATAGGGAGGAGCTGACTAAATATGCCAGG GGTAAGAGACCCCTCTAGATTGAACACCATGAGGGGGGAATTTTCTTGAC TTTTATGGCCACGGGTAGTGATGTATAGCCCCCCTGGAAGATTGACTCTG AATTTATTTTACGGTTGGGCGTTTTTATCCAAAGTATATTGTGATAGTTG TTGCAGGGTCAGAATAGCGTTAATCAGGTCTGCAGGTATATATGTAGCAC ACACGTGCATCATATACACATAAAATGTACAAGTGCTAGTGAGGTGCTCT ATTCCCTGCCTGCTCCCCTTTCATATCACGTTAGATAGTTGATTGAAGGA TAGGAATTTGCGGGGGGATTAGATCCACAATCGCAAGTTGCTTGTTGTGT GAGAGATTCTGATTTGTTATGGAGGTGTAATGGCCTTGCCAACATTGATG GGTGCGGGTCATGATACTCTATGCAGCTTTTTGCAGCAGTAGAGTTGCTT ACATGTGTGTCGTAAGTGTATCGAGCCACTGTGATGCATTCGGTTTACAA CCTTTTCTTCCCTTGGTCCGTCTGAGGGTTTTGAGTTTGGGTTGGGATTT ATACGTTTATTCTACTGCAGTCCCTTCGACAGATAGAGAAAGATTTATTT CCCTTCTGGGTACATACATCCCAGTTGTCGTCCTGTTTCCAAAATACCGT GTGAACTACCCTCCCAATGTTGAGATTGATTGTTTAGTTTGAGGTTCGAG ATTTGTTCACTCTAGCTAGTCCATCGAATTACAGAGACATTGTTTCCCAC TTGTTCCCGAAGTTATAGTGGTAGTAGTGTATAAAGAGCATTTAAATTTA TAGTGCAGCAGTGTAGTCAGGAATTTATCGGACTGGTTTTAGCGGATAAA TTGACAAGATGTACAGGAAGGTTAGGAGGTTATGCCATGTTTTCAGATTT ATATCCTTACCCCCCTCCCCCTCACAATTTACCCTCTGGGCGGAAGGTAA AGCACAACTAATTTTGGAAGAGTAAAGTAAGTGTTCATTGATGACCTCAG TTGTGCCTCTGCTTGTCCGTACCATATTTTGTTTGAGCTCAGGAATCGGG AAACTGCAATAATGAATTATGAAAAAAGTACACGGCAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9979:692..4329-

>mRNA_C-tenellus_contig9979.1.1 ID=mRNA_C-tenellus_contig9979.1.1|Name=mRNA_C-tenellus_contig9979.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=522bp|location=Sequence derived from alignment at C-tenellus_contig9979:692..4329- (Choristocarpus tenellus KU2346)
ATGAAACCAAGCCTTTTAGAGGAGGCGTATATGCACATAGATGCAGCACG
GCGAAATGGCACTGGCTGCCTGGTTCACTGTGAGAAGGGCACCAGTCGTT
CATGTTCATTAGTCCTGGGCTACCTTATGCAGCTGGGAGAAGGGATGTCG
TTGCTGGCAGCTCTTGAGTTCTGTCAGGGCAAGCGTCGGCAGTGCCACCC
AGATAAATTTTTCTTGCAGAAACTGTCGGAGTATGAGGACATCCTTTACG
GTCAGACAACGGTCTCCCTCCATAACTATCATCGTGGGGACCTAGCTGAC
AGTCTTGCTGTAACTAACAATGCTGAATCGCCAGGCGAAGTGGCGACTGT
TGCATCAAGTATAGGAGCTAGTTATGATTGTGTTTGGTCGGGGGAGGGTC
GGGTCTCCTTGGAGGCTATTGATCCTCCTGGGGTAGATGCGTCAGAGCTG
ATGATGGAAAGAATTCAGCCAAAATCGGATGGAGATCCGATGGATGTTTC
AGGGATGACTAATAGTGCCTGA
back to top