mRNA_C-tenellus_contig9977.3.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: D7FQ18_ECTSI (Putative tRNA isopentenyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ18_ECTSI) HSP 1 Score: 221 bits (562), Expect = 5.190e-66 Identity = 118/213 (55.40%), Postives = 147/213 (69.01%), Query Frame = 1 Query: 1 ASPLFLMLIPIRAFLGKAIRGTGSRVPLSFTARIDCLR-EVPLRCSISMANLAPG-----------SDGRGKVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGLQV 603 A+PLFL+ P RA LG A+ SR+P S T + + +V R S DG KV+VIAGPTA+GKSSI + LC+ +GGEIVS DSVQVYR + IG NKPSP + EV HHL+D+A L++TFTAGDFV+ A AAIDDI+SRGRVPVVVGGTMMY+ WLV G P+APKKDPAVA+AV +L P+ +R DW+G L++ Sbjct: 3 AAPLFLVWAPARALLGAAV----SRLPSSTTRLLSYSQNKVRRRRGASTXXXXXXXXXXXXXXXXXEDGAAKVIVIAGPTATGKSSIALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPEEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALEL 211
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: A0A7S3S7Q7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S7Q7_EMIHU) HSP 1 Score: 185 bits (470), Expect = 6.550e-53 Identity = 87/142 (61.27%), Postives = 109/142 (76.76%), Query Frame = 1 Query: 178 KVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGLQV 603 +VVV+AGPTA GKS++GM LC+ + GE+VS DSVQVYR L IG+NKPS V+RA HHLID+A L D +TAG F A A+D+++SRG+ PV+VGGT MY++WLV G P AP+ DPAVA A D L+PYQE DWEGGL + Sbjct: 51 RVVVVAGPTAVGKSALGMRLCEALPGELVSVDSVQVYRGLQIGANKPSAVERARTAHHLIDVAELSDDYTAGTFYADALTAVDEVLSRGKTPVLVGGTSMYLRWLVHGRPTAPRSDPAVAAAARDALQPYQEAADWEGGLAL 192
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: W7T6K3_9STRA (Trna dimethylallyltransferase 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6K3_9STRA) HSP 1 Score: 167 bits (423), Expect = 5.510e-46 Identity = 85/159 (53.46%), Postives = 112/159 (70.44%), Query Frame = 1 Query: 145 ANLAPGSDGRGKVVVIAGPTASGKSSIGMELCKRIG----GEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDI--AGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGLQV 603 A+ A GS R KVVV+ GPTA GKS++ + +C+ + GEI+S DSVQVYR L++GSNKPS +RA V HHL+D+ A + FTAGDFVR A AIDD+++RG +PVVVGGT MY QWLV G P+APK DP + + L P+ ++ DW+GGL + Sbjct: 66 ASRAGGS--RPKVVVVTGPTAVGKSNLALRICQDLAPGARGEIISVDSVQVYRGLDVGSNKPSEAERARVPHHLLDVLDADSPEAFTAGDFVRKAEEAIDDVLARGGMPVVVGGTSMYTQWLVQGRPDAPKSDPEMEQRARKMLAPFLDKKDWKGGLSL 222
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: A0A4D9D1X7_9STRA (E3 ubiquitin-protein ligase n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X7_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.400e-44 Identity = 82/150 (54.67%), Postives = 107/150 (71.33%), Query Frame = 1 Query: 172 RGKVVVIAGPTASGKSSIGMELCKRIG----GEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDI--AGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGLQV 603 R KVVV+ GPTA GKS++ + +C+ + GEI+S DSVQVYR L++GSNKPS +RA V HHL+D+ A + FTAGDFVR A AIDD+++RG +PVVVGGT MY QWLV G P+APK DP + + L P+ ++ DWEGGL + Sbjct: 2470 RPKVVVVTGPTAVGKSNLALRICQDLAQGARGEIISVDSVQVYRGLDVGSNKPSEAERARVPHHLLDVLDADSPEAFTAGDFVRKAEEAIDDVLARGGMPVVVGGTSMYTQWLVQGRPDAPKSDPEMEQRARKMLAPFLDKKDWEGGLSL 2619
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: A0A7R9UXM3_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UXM3_DIALT) HSP 1 Score: 153 bits (387), Expect = 6.870e-44 Identity = 79/171 (46.20%), Postives = 106/171 (61.99%), Query Frame = 1 Query: 76 VPLSFTARIDCLREVPLRCSISMANLAPGSDGRGKVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWE 588 V LS + C R LR + + + P R V+VIAGPT GKS + M+L R+GGEI+S DSVQVYR L++GSNKPS + V HHL+ + + + AG+F R A AI D+ +RGR + VGGT MY+ WL++GTP APK DPA+A V L P +E + W+ Sbjct: 12 VALSMACAVACRRS--LRSVMRLTGVGPP---RRPVIVIAGPTGVGKSDVAMQLAARLGGEIISVDSVQVYRSLDVGSNKPSAAEMRRVRHHLVSVREPSEPYAAGNFYRDAADAIADVHARGRWAICVGGTSMYMHWLINGTPTAPKADPALAAQVAARLAPLREAHAWD 177
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: A0A7S4BQD7_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BQD7_CHRCT) HSP 1 Score: 156 bits (395), Expect = 6.840e-43 Identity = 73/153 (47.71%), Postives = 105/153 (68.63%), Query Frame = 1 Query: 139 SMANLAPGSDGRGKVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGL 597 ++A +AP +V+V+ GPTA GKS++G+ LC+ + GE++S DSVQVYR L IG+NKPS + A V HHL+DI D +TAG F R A A+ ++ RG+ PV+VGGT MY++WLV+G P+AP+ DPA+A+ L+ Y++ DW L Sbjct: 32 TLARMAPS-----RVIVLTGPTAVGKSALGLRLCEALPGELISVDSVQVYRGLQIGANKPSASELARVPHHLVDICEPRDDYTAGAFYRDALKAVKQVLERGKTPVLVGGTSMYLKWLVNGRPDAPRSDPAIAKRAHAMLQDYEKAGDWNSAL 179
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: A0A0K9Q9G2_SPIOL (Uncharacterized protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9Q9G2_SPIOL) HSP 1 Score: 158 bits (400), Expect = 7.210e-43 Identity = 81/189 (42.86%), Postives = 117/189 (61.90%), Query Frame = 1 Query: 43 LGKAIRGTGSRVPLSFTARIDCLREV--PLRCSISMANLAPGSDGRGKVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGLQV 603 + +R G R +T+ CLR CS S A+ + + + KV+VI+GPT +GKS + +EL KR+ GEI+SADSVQVY+ L++GS KPSP DR EV HHL+DI + ++ G F A A DI+ +GRVP+V GGT +Y++W + G P+APK P +A V +L YQ DW+ +++ Sbjct: 4 VAAGLRPWGLRHHFPYTSSATCLRRHLHSSLCSSSSASFSRREE-KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYQGLDVGSAKPSPSDRKEVPHHLLDILHPSEEYSVGQFYDDARQATRDILKKGRVPIVTGGTGLYLRWFIYGKPHAPKASPDIATQVYAELENYQFSGDWDAAVKL 191
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: A0A6G1CRA9_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CRA9_9ORYZ) HSP 1 Score: 157 bits (396), Expect = 1.760e-42 Identity = 73/144 (50.69%), Postives = 102/144 (70.83%), Query Frame = 1 Query: 172 RGKVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGLQV 603 + KV+VI+GPT SGK+ + ++L KR+ GEI+SADSVQVYR L++GS KPSP +R+ V HHLIDI + ++AGDF R A AA DD+++RGRVPVV GGT +Y++W + G PN P+ V AV +L +Q WE +++ Sbjct: 36 KNKVIVISGPTGSGKTRLALDLAKRLAGEIISADSVQVYRGLDVGSAKPSPSERSAVPHHLIDILHASEDYSAGDFFRDARAATDDLLARGRVPVVAGGTGLYLRWYIYGKPNVPQSSMDVTSAVWSELARFQNAGRWEEAVEL 179
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: B9SE49_RICCO (ATP binding protein, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9SE49_RICCO) HSP 1 Score: 156 bits (394), Expect = 4.310e-42 Identity = 72/144 (50.00%), Postives = 98/144 (68.06%), Query Frame = 1 Query: 172 RGKVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGLQV 603 R KV+VI+GPT +GKS + +EL KR+ GEI+SADSVQVYR L++GS KPSP +R EV HHLID++ + ++ G F A A DI+ GRVP+V GGT +Y++W V G P+ PK P +A V +L QE DW+ +Q+ Sbjct: 40 REKVLVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSPTERKEVRHHLIDVSHPSEDYSVGKFFEDARQATRDILDNGRVPIVAGGTGLYLRWFVYGKPDVPKASPEIASQVYSELAELQENQDWDAAVQL 183
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Match: A0A7S4F577_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F577_CHRCT) HSP 1 Score: 156 bits (395), Expect = 5.920e-42 Identity = 73/153 (47.71%), Postives = 105/153 (68.63%), Query Frame = 1 Query: 139 SMANLAPGSDGRGKVVVIAGPTASGKSSIGMELCKRIGGEIVSADSVQVYRQLNIGSNKPSPVDRAEVNHHLIDIAGLEDTFTAGDFVRLAHAAIDDIISRGRVPVVVGGTMMYIQWLVDGTPNAPKKDPAVARAVVDDLRPYQERNDWEGGL 597 ++A +AP +V+V+ GPTA GKS++G+ LC+ + GE++S DSVQVYR L IG+NKPS + A V HHL+DI D +TAG F R A A+ ++ RG+ PV+VGGT MY++WLV+G P+AP+ DPA+A+ L+ Y++ DW L Sbjct: 32 TLARMAPS-----RVIVLTGPTAVGKSALGLRLCEALPGELISVDSVQVYRGLQIGANKPSASELARVPHHLVDICEPRDDYTAGAFYRDALKAVKQVLERGKTPVLVGGTSMYLKWLVNGRPDAPRSDPAIAKRAHAMLQDYEKAGDWNSAL 179 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9977.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9977.3.1 >prot_C-tenellus_contig9977.3.1 ID=prot_C-tenellus_contig9977.3.1|Name=mRNA_C-tenellus_contig9977.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=195bp MLIPIRAFLGKAIRGTGSRVPLSFTARIDCLREVPLRCSISMANLAPGSDback to top mRNA from alignment at C-tenellus_contig9977:3381..5621+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9977.3.1 ID=mRNA_C-tenellus_contig9977.3.1|Name=mRNA_C-tenellus_contig9977.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2241bp|location=Sequence derived from alignment at C-tenellus_contig9977:3381..5621+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9977:3381..5621+ >mRNA_C-tenellus_contig9977.3.1 ID=mRNA_C-tenellus_contig9977.3.1|Name=mRNA_C-tenellus_contig9977.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=585bp|location=Sequence derived from alignment at C-tenellus_contig9977:3381..5621+ (Choristocarpus tenellus KU2346)back to top |