mRNA_C-tenellus_contig9962.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9962.2.1
Unique NamemRNA_C-tenellus_contig9962.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.390e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR + DGE+VL +++ VDD+
Sbjct:   16 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEDGEVVLILVVHVDDI 73
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.080e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W ALL   LL LG EQC AD CLFR++  GE+VL +++ VDD+
Sbjct:  249 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDI 306
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KFD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 9.720e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR++  GE VL +++ VDD+
Sbjct:  214 QLNKSLYGLRQASRQWYALLTKCLLALGFEQCMADSCVFRFVEGGEEVLLLVVHVDDI 271
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.140e-10
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDML 180
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR +  GE+VL +++ VDD++
Sbjct:  245 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRSVEGGEVVLLLVVHVDDIV 303
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5JBR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR +  GE+VL +++ VDD+
Sbjct:  173 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEGGEVVLLLVVHVDDI 230
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.840e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR++  GE+VL + + VDD+
Sbjct:   70 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRFVEGGEVVLLLEVHVDDI 127
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KKQ0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.990e-10
Identity = 26/62 (41.94%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDMLMSS 189
            K++++LYG+ Q+   W      +L+  G EQC  DPC+FR ++DGELV  ++I VDD+++S+
Sbjct:   47 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGELVGLIVINVDDIMLSA 108
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KL18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL18_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.470e-10
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+FR +  G++VL +++ VDD+
Sbjct:  426 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEGGDVVLLLVVHVDDI 483
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5JSV9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.870e-10
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W ALL   LL LG EQC AD C+F  +  GE+VL + + VDD+
Sbjct:   70 QLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFSLVEKGEVVLILAVHVDDI 127
[Close]
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.790e-10
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 KLQKSLYGIVQASCNWN--ALLVASLLELGLEQCEADPCLFRWMLDGELVLTMLIRVDDM 177
            +L KSLYG+ QAS  W   ALL   LL LG EQC ADPC+FR++  GE+VL +++  DD+
Sbjct:  717 QLNKSLYGLRQASREWEWYALLKKCLLALGFEQCMADPCVFRFVEGGEVVLLLVVHADDI 776
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9962.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWK8_9PHAE1.390e-1156.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE2.080e-1156.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFD2_9PHAE9.720e-1155.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEU9_9PHAE1.140e-1054.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBR0_9PHAE1.320e-1055.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG67_9PHAE1.840e-1055.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKQ0_9PHAE2.990e-1041.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL18_9PHAE3.470e-1053.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSV9_9PHAE3.870e-1053.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIL0_9PHAE4.790e-1053.33Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9962contigC-tenellus_contig9962:2050..2268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog50452.A0A087GC75
PFAMs2OG-FeII_Oxy,DIOX_N
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3e-08
EggNOG OGsCOG2801@1|root,COG3491@1|root,KOG0017@2759|Eukaryota,KOG0143@2759|Eukaryota
Descriptionoxidoreductase activity
Cds size219
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.98759-CDS-C-tenellus_contig9962:2049..22681680790208.98759-CDS-C-tenellus_contig9962:2049..2268Choristocarpus tenellus KU2346CDSC-tenellus_contig9962 2050..2268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9962.2.1prot_C-tenellus_contig9962.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9962 2050..2268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9962.2.1

>prot_C-tenellus_contig9962.2.1 ID=prot_C-tenellus_contig9962.2.1|Name=mRNA_C-tenellus_contig9962.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=73bp
WKLQKSLYGIVQASCNWNALLVASLLELGLEQCEADPCLFRWMLDGELVL
TMLIRVDDMLMSSKGSNPNPWI*
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mRNA from alignment at C-tenellus_contig9962:2050..2268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9962.2.1 ID=mRNA_C-tenellus_contig9962.2.1|Name=mRNA_C-tenellus_contig9962.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=219bp|location=Sequence derived from alignment at C-tenellus_contig9962:2050..2268+ (Choristocarpus tenellus KU2346)
TGGAAGCTACAAAAATCATTGTATGGGATTGTCCAAGCATCGTGTAATTG
GAATGCCCTACTTGTGGCATCATTGCTGGAGCTGGGACTGGAACAATGTG
AGGCTGATCCTTGTTTGTTTAGATGGATGTTGGATGGGGAACTGGTACTA
ACCATGCTCATTCGTGTCGATGATATGCTTATGTCCAGCAAGGGGTCTAA
CCCTAACCCTTGGATATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9962:2050..2268+

>mRNA_C-tenellus_contig9962.2.1 ID=mRNA_C-tenellus_contig9962.2.1|Name=mRNA_C-tenellus_contig9962.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=219bp|location=Sequence derived from alignment at C-tenellus_contig9962:2050..2268+ (Choristocarpus tenellus KU2346)
TGGAAGCTACAAAAATCATTGTATGGGATTGTCCAAGCATCGTGTAATTG
GAATGCCCTACTTGTGGCATCATTGCTGGAGCTGGGACTGGAACAATGTG
AGGCTGATCCTTGTTTGTTTAGATGGATGTTGGATGGGGAACTGGTACTA
ACCATGCTCATTCGTGTCGATGATATGCTTATGTCCAGCAAGGGGTCTAA
CCCTAACCCTTGGATATAG
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