mRNA_C-tenellus_contig9957.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9957.2.1
Unique NamemRNA_C-tenellus_contig9957.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A6H5J6Y2_9PHAE (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Y2_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.560e-14
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  154 LANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQ 285
            LA ILCCLCGR IQPNGANMCG CLQ++VDVTEGIP+ GL +IQ
Sbjct:   61 LATILCCLCGRPIQPNGANMCGACLQDQVDVTEGIPKKGLTIIQ 104
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: D7G1R1_ECTSI (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 9.080e-13
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  154 LANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQ 285
            LA ILCCLCGR IQPNGANMCG CL+++VDVTEGIP+ GL +IQ
Sbjct:   60 LATILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQ 103
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A836CPD6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.760e-8
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  139 MGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQ 285
            M    L  ILCCLCG+SIQPN A +CG CL+ EVD+TE I   GLK+ Q
Sbjct:    1 MATAHLGAILCCLCGKSIQPNSAALCGECLRAEVDITENIQEKGLKVYQ 49
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A8J1UUL0_OWEFU (60S ribosomal export protein NMD3 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UUL0_OWEFU)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-6
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  136 EMGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRT 267
            +    +L  ILCC CG SI PN ANMC  CLQ EVD+TEGIP++
Sbjct:    6 QQNNASLGTILCCKCGVSIAPNPANMCVGCLQSEVDITEGIPKS 49
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A6G0WWT1_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWT1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.080e-6
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  163 ILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 264
            ILCC+CG SI+PN ANMC PCL  EVD+TEGI +
Sbjct:    3 ILCCMCGVSIEPNMANMCAPCLSNEVDITEGISK 36
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A138ZZY6_GONPJ (60S ribosomal export protein NMD3 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZZY6_GONPJ)

HSP 1 Score: 57.8 bits (138), Expect = 3.210e-6
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  130 TSEMGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRT 267
            TS+    A   ILCC+CG +I PN A MCG CL+ EVD+TEGIP++
Sbjct:    9 TSQEAHMAEHVILCCVCGVAIPPNPAAMCGTCLRNEVDITEGIPKS 54
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A2R5G5Z6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5Z6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.410e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  139 MGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 264
            +G+ AL +I CC+CG SIQPN  NMC  CL++ VDVTEGI +
Sbjct:    4 VGKPALPDIACCMCGVSIQPNDVNMCLQCLKDRVDVTEGISK 45
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A7S3UCS2_9CHLO (60S ribosomal export protein NMD3 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCS2_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-5
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  151 ALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 264
            AL N+LCCLCG +IQPN +NMC  C++ +VDVTEGI +
Sbjct:    8 ALPNVLCCLCGITIQPNPSNMCVNCVRSQVDVTEGIQK 45
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A7J6MZ82_PERCH (60S ribosomal export protein NMD3 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MZ82_PERCH)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-5
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  127 ATSEMGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 264
            A  EM R A  N+LCC+CG S+QPN +NMC  C++ EVD+TEGI +
Sbjct:  894 AQDEMPRYA--NVLCCVCGASMQPNQSNMCVNCMKGEVDITEGISK 937
[Close]
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A0G4EXZ8_VITBC (60S ribosomal export protein NMD3 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EXZ8_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 2.010e-5
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  154 LANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGL 273
            +  +LCCLCG SI+ N A MC  CL+ +VD+TEGI RTGL
Sbjct:    1 MPTVLCCLCGTSIEANPAMMCVSCLRSQVDITEGISRTGL 40
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5J6Y2_9PHAE1.560e-1479.5560S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
D7G1R1_ECTSI9.080e-1377.2760S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
A0A836CPD6_9STRA4.760e-859.1860S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A8J1UUL0_OWEFU1.290e-659.0960S ribosomal export protein NMD3 n=1 Tax=Owenia f... [more]
A0A6G0WWT1_9STRA3.080e-670.5960S ribosomal export protein NMD3 n=1 Tax=Aphanomy... [more]
A0A138ZZY6_GONPJ3.210e-656.5260S ribosomal export protein NMD3 n=1 Tax=Gonapody... [more]
A0A2R5G5Z6_9STRA4.410e-659.5260S ribosomal export protein NMD3 n=1 Tax=Hondaea ... [more]
A0A7S3UCS2_9CHLO1.040e-563.1660S ribosomal export protein NMD3 n=1 Tax=Picocyst... [more]
A0A7J6MZ82_PERCH1.290e-556.5260S ribosomal export protein NMD3 n=1 Tax=Perkinsu... [more]
A0A0G4EXZ8_VITBC2.010e-560.0060S ribosomal export protein NMD3 n=1 Tax=Vitrella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9957contigC-tenellus_contig9957:4619..5275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1R1
PFAMsNMD3
Model size657
Max annot lvl2759|Eukaryota
KEGG koko:K07562
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-14
EggNOG OGsCOG1499@1|root,KOG2613@2759|Eukaryota
Descriptionribosomal large subunit binding
Cds size414
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.7375784-UTR-C-tenellus_contig9957:4618..47231680790208.7375784-UTR-C-tenellus_contig9957:4618..4723Choristocarpus tenellus KU2346UTRC-tenellus_contig9957 4619..4723 -
1680790208.7668495-UTR-C-tenellus_contig9957:5137..52751680790208.7668495-UTR-C-tenellus_contig9957:5137..5275Choristocarpus tenellus KU2346UTRC-tenellus_contig9957 5138..5275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.7547338-CDS-C-tenellus_contig9957:4723..51371680790208.7547338-CDS-C-tenellus_contig9957:4723..5137Choristocarpus tenellus KU2346CDSC-tenellus_contig9957 4724..5137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9957.2.1prot_C-tenellus_contig9957.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9957 4724..5137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9957.2.1

>prot_C-tenellus_contig9957.2.1 ID=prot_C-tenellus_contig9957.2.1|Name=mRNA_C-tenellus_contig9957.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
MGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQA
SDSRSVQVNICITHGYAGGGICFCHWWIVEMVRELIVSAESIISIDFIHI
AFCILQLSLHLKVPNGAVHNITDSKFHPCTLGMLISI*
back to top

mRNA from alignment at C-tenellus_contig9957:4619..5275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9957.2.1 ID=mRNA_C-tenellus_contig9957.2.1|Name=mRNA_C-tenellus_contig9957.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=657bp|location=Sequence derived from alignment at C-tenellus_contig9957:4619..5275- (Choristocarpus tenellus KU2346)
AAAAGGTTTTCATCCTGAATCCTCTGATTTCTATTTTCTGGATTCTCCTC
CAACAGTCTCTACACTATCCATTTGAAGTTGATCTGTCGACTTGCAATCG
AAGAATTACTTGCAACCATCGTATATGCGACTTCGGAAATGGGTCGTCAA
GCCCTTGCGAATATCTTGTGCTGCCTGTGTGGCCGCTCTATCCAGCCCAA
CGGTGCCAATATGTGCGGACCTTGTCTCCAGGAGGAGGTGGATGTGACAG
AGGGCATCCCAAGAACTGGACTGAAGATGATCCAGGCAAGTGATAGTCGA
AGTGTACAGGTGAATATATGTATAACCCATGGCTATGCTGGTGGAGGTAT
TTGCTTCTGTCACTGGTGGATAGTTGAGATGGTACGGGAATTGATTGTAA
GTGCTGAGAGCATAATATCGATCGATTTTATCCATATCGCTTTCTGCATA
CTGCAGCTGTCCCTACATCTAAAAGTGCCAAATGGAGCAGTCCACAACAT
AACAGATTCAAAATTTCACCCATGTACCTTGGGAATGCTCATTTCTATCT
GAATTGGCGTGCTTCGGATCCACGGATCCGGGCTTGCTCGTCCTTCAAAA
GGTCTTGACATACACAAAGGCGCACTTACACAAGACACCCATGTCGCAAT
GCCGCTT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9957:4619..5275-

>mRNA_C-tenellus_contig9957.2.1 ID=mRNA_C-tenellus_contig9957.2.1|Name=mRNA_C-tenellus_contig9957.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig9957:4619..5275- (Choristocarpus tenellus KU2346)
ATGGGTCGTCAAGCCCTTGCGAATATCTTGTGCTGCCTGTGTGGCCGCTC
TATCCAGCCCAACGGTGCCAATATGTGCGGACCTTGTCTCCAGGAGGAGG
TGGATGTGACAGAGGGCATCCCAAGAACTGGACTGAAGATGATCCAGGCA
AGTGATAGTCGAAGTGTACAGGTGAATATATGTATAACCCATGGCTATGC
TGGTGGAGGTATTTGCTTCTGTCACTGGTGGATAGTTGAGATGGTACGGG
AATTGATTGTAAGTGCTGAGAGCATAATATCGATCGATTTTATCCATATC
GCTTTCTGCATACTGCAGCTGTCCCTACATCTAAAAGTGCCAAATGGAGC
AGTCCACAACATAACAGATTCAAAATTTCACCCATGTACCTTGGGAATGC
TCATTTCTATCTGA
back to top