mRNA_C-tenellus_contig9949.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9949.2.1
Unique NamemRNA_C-tenellus_contig9949.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9949.2.1 vs. uniprot
Match: A0A6H5KJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.500e-11
Identity = 62/138 (44.93%), Postives = 74/138 (53.62%), Query Frame = 1 
Query:    1 SDTDDTEADKENLRMLMLSLGGEEEDEVQQRLGEGEEKGEGNEWQDEGRHRNLQGAS---HTEPGAAAL----VFRGDDTGDDQVVMGLNASYDEGTREGPWNVTGEADAGGGNTLFLSSVKDQHQDISTHLHDISLQ 393
            SDTDDTEA+KENLR LML+LG      V  R G+G+   E     DEG  R+  G S     E G+ A     V  G D  D   VM                 TGEADAGGGNTL +SSV+ Q++DIS+ L D+SLQ
Sbjct: 3707 SDTDDTEAEKENLRELMLALGA-----VDNREGDGDASAE----DDEGGRRHGVGGSVEAGDEAGSIAAGHGDVVSGSDGYDGDHVMAA--------------ATGEADAGGGNTL-MSSVRAQNEDISSRLQDMSLQ 3820
[Close]
BLAST of mRNA_C-tenellus_contig9949.2.1 vs. uniprot
Match: D7FZ31_ECTSI (Viral A-type inclusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ31_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.020e-11
Identity = 59/133 (44.36%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:    1 SDTDDTEADKENLRMLMLSLGGEEEDEVQQRLGEGEEKGEGNEWQDEG--RHRNLQGASHTEPGAAALVFRGDDTGDDQVVMGLNASYDEGTREGPWNVTGEADAGGGNTLFLSSVKDQHQDISTHLHDISLQ 393
            SDTDDTEA+KENLR LML+LG      V  R G+G+   E     DEG  RH    G    +        RGD       V+ ++  YD          TGEADAGGGNTL +SSV+ Q++DIS+ L D+SLQ
Sbjct: 3450 SDTDDTEAEKENLRELMLALGA-----VDVRDGDGDASAE----DDEGGRRHGVGDGVEARDEAGNVSAGRGD-------VVSVSDGYDGDHVIAA--ATGEADAGGGNTL-MSSVRAQNEDISSRLQDMSLQ 3563
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9949.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJI0_9PHAE1.500e-1144.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ31_ECTSI7.020e-1144.36Viral A-type inclusion protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9949contigC-tenellus_contig9949:3741..4154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size414
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.3216062-CDS-C-tenellus_contig9949:3740..41541680790208.3216062-CDS-C-tenellus_contig9949:3740..4154Choristocarpus tenellus KU2346CDSC-tenellus_contig9949 3741..4154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9949.2.1prot_C-tenellus_contig9949.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9949 3741..4154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9949.2.1

>prot_C-tenellus_contig9949.2.1 ID=prot_C-tenellus_contig9949.2.1|Name=mRNA_C-tenellus_contig9949.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
SDTDDTEADKENLRMLMLSLGGEEEDEVQQRLGEGEEKGEGNEWQDEGRH
RNLQGASHTEPGAAALVFRGDDTGDDQVVMGLNASYDEGTREGPWNVTGE
ADAGGGNTLFLSSVKDQHQDISTHLHDISLQSLQVSE*
back to top

mRNA from alignment at C-tenellus_contig9949:3741..4154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9949.2.1 ID=mRNA_C-tenellus_contig9949.2.1|Name=mRNA_C-tenellus_contig9949.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=414bp|location=Sequence derived from alignment at C-tenellus_contig9949:3741..4154+ (Choristocarpus tenellus KU2346)
AGTGATACTGATGACACAGAGGCCGATAAGGAAAACCTTCGGATGCTAAT
GCTATCACTGGGCGGTGAAGAGGAGGATGAGGTGCAGCAAAGGCTTGGGG
AGGGGGAGGAGAAGGGTGAAGGAAACGAGTGGCAAGATGAAGGCAGACAC
AGAAATCTCCAGGGTGCATCTCATACTGAGCCAGGGGCTGCTGCACTGGT
GTTTAGAGGGGATGATACGGGAGATGATCAGGTAGTGATGGGTCTCAATG
CAAGTTATGATGAGGGGACAAGGGAAGGACCGTGGAATGTAACTGGAGAA
GCAGATGCCGGAGGTGGGAACACACTGTTCTTGTCTTCTGTGAAGGATCA
GCACCAAGACATCTCCACTCATTTGCACGATATCTCGCTGCAATCTCTGC
AGGTCAGTGAATGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9949:3741..4154+

>mRNA_C-tenellus_contig9949.2.1 ID=mRNA_C-tenellus_contig9949.2.1|Name=mRNA_C-tenellus_contig9949.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig9949:3741..4154+ (Choristocarpus tenellus KU2346)
AGTGATACTGATGACACAGAGGCCGATAAGGAAAACCTTCGGATGCTAAT
GCTATCACTGGGCGGTGAAGAGGAGGATGAGGTGCAGCAAAGGCTTGGGG
AGGGGGAGGAGAAGGGTGAAGGAAACGAGTGGCAAGATGAAGGCAGACAC
AGAAATCTCCAGGGTGCATCTCATACTGAGCCAGGGGCTGCTGCACTGGT
GTTTAGAGGGGATGATACGGGAGATGATCAGGTAGTGATGGGTCTCAATG
CAAGTTATGATGAGGGGACAAGGGAAGGACCGTGGAATGTAACTGGAGAA
GCAGATGCCGGAGGTGGGAACACACTGTTCTTGTCTTCTGTGAAGGATCA
GCACCAAGACATCTCCACTCATTTGCACGATATCTCGCTGCAATCTCTGC
AGGTCAGTGAATGA
back to top