mRNA_C-tenellus_contig9946.1.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: D8LNJ4_ECTSI (Glutamyl-tRNA reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ4_ECTSI) HSP 1 Score: 344 bits (882), Expect = 2.560e-106 Identity = 195/312 (62.50%), Postives = 238/312 (76.28%), Query Frame = 2 Query: 113 AGLSCPMRAVMRVIYIHLLLIYALFAGCEASTVPSSGGCPLSRIQLAFQAPINSLSAVLNG--AAGSASTFKAGFFTPQSIA----TPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAE--LDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 A CP +RV+Y+H +L+ A F EA T + GGCP+SR+Q AFQAP NSLS L+G A S+ T + +P A PRW+SE V+ R +V LGMS VET G KR+AE +EA + KA+K+ARRIAA+S PLSVHVIG+SHHN+ V+VRE+LAVPEAEWN AS KLC ++NI EA VLSTCNRFEVYVA+ ++ AAI+DV++ LQ+ SGL QS+LR+NLFMLS +DAVWHLLRVSAGLDSLVVGEGQILSQV+ CY+HGTE+DGSAGKVV+R+ NTAVSAGKRARAETSIS+G Sbjct: 6 ASAGCPF---VRVLYLHFVLLLAFFTSVEA-TAMTKGGCPVSRLQAAFQAPFNSLSLALHGQQATMSSLTARDRSSSPPIAAGNTGAPRWVSEGVRSRVVRSRTVDVKPLGMSAVETKPGNKRAAEGEPEEAKETKAQKKARRIAASSTPLSVHVIGLSHHNAGVDVRERLAVPEAEWNLASAKLCGYENIREAAVLSTCNRFEVYVAATDAHAAIRDVMTHLQEYSGLSQSELRQNLFMLSREDAVWHLLRVSAGLDSLVVGEGQILSQVRQCYLHGTEKDGSAGKVVARMLNTAVSAGKRARAETSISKG 313
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S2V0V0_9STRA (Glutamyl-tRNA reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0V0_9STRA) HSP 1 Score: 262 bits (669), Expect = 1.790e-75 Identity = 150/283 (53.00%), Postives = 190/283 (67.14%), Query Frame = 2 Query: 182 LFAGCEASTVPSSGGCPL--SRIQLAFQAPINSLSAVLNGAAGSASTFKAGFFTPQSIATPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAELDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 LF T S GCP R+ AFQ P+ +++ ++N KA P+ + P + S +R ++ R +V +T ELD AA+KKA KR +R+A +SKPL VHVIG+SHHN+ V VREKLAVPEA+WN S +L + IDEA +LSTCNRFEVYV +H + AI+D + FL ++SGLPQS+LR+NLF+LS +DA H+LRVS GLDSLVVGEGQILSQV+ CY+HG EEDGSAGKV SR+ N AVSAGKR RAET+ISRG Sbjct: 20 LFLSHATPTFSRSNGCPFHPDRLLSAFQNPLTAVNGIVNS--------KAPPTLPRISSVPANSWQPASIVRQTVTQSLAPRFSSTVDQT--------ELDTAAEKKA-KRDKRLAQSSKPLDVHVIGLSHHNADVSVREKLAVPEADWNTVSAQLVAMEGIDEAAILSTCNRFEVYVGAHEAHEAIRDTILFLSERSGLPQSELRKNLFILSGEDATKHVLRVSGGLDSLVVGEGQILSQVRQCYLHGIEEDGSAGKVTSRMLNVAVSAGKRVRAETAISRG 285
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A836CGD2_9STRA (Glutamyl-tRNA reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD2_9STRA) HSP 1 Score: 252 bits (644), Expect = 1.270e-71 Identity = 126/174 (72.41%), Postives = 151/174 (86.78%), Query Frame = 2 Query: 503 KRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 K+A+R ++ PL VHVIG+SHHN+A+EVREKLAVPEA WN S LCE D+I EA VLSTCNRFE Y+A+H++ AAI++ ++ LQQ+SGL Q+ LRR+LF+LS +DAVWHLLRVSAGLDSLVVGEGQILSQV+ CY+HGTEE GSAGKVV+RL NTAVSAGKRARAETSIS+G Sbjct: 130 KKAKRKENSTAPLQVHVIGLSHHNAALEVREKLAVPEANWNMESEALCEQDSIVEAAVLSTCNRFETYIAAHDAHAAIRETIAHLQQRSGLSQATLRRSLFILSGEDAVWHLLRVSAGLDSLVVGEGQILSQVRQCYLHGTEEGGSAGKVVARLLNTAVSAGKRARAETSISKG 303
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A836C898_9STRA (Glutamyl-tRNA reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C898_9STRA) HSP 1 Score: 248 bits (633), Expect = 7.320e-70 Identity = 160/327 (48.93%), Postives = 219/327 (66.97%), Query Frame = 2 Query: 116 GLSCPMRAV-----MRVIYIHLLLIYA---LFAGCEASTVPSSGG-----CPLSRIQ----LAFQ-------APINSLSAVLNGAAGSASTFKAGFFTPQSIATPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAELDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 G CP++ + +R++++H+LL + L +G + + PS CPL+R AFQ P+ +++ + +++ FT A PR +E +PLR RK L MS ++ ++SA D AA KA+K+ R+ A++ L+VHVIG+SHHN+AVEVREKLAVPE+EWN S +LCE ++ EA VLSTCNRFEVYVA+ ++ AAI++ + LQ++SGL Q+ LRR+LF+LS +DAVWH+LRVSAGLDSL+VGEGQILSQV+ CY+HGTEEDG AGKVV+RL NTAVSAGKR R+ETSIS+G Sbjct: 7 GGKCPIKRITQSVLVRLVWLHVLLFLSFLGLGSGHDNTASPSVRAASWSKCPLARASRFASTAFQHSPHPDALPVKAITCTAGPSQIHSASPPRSQFT--LAAFPRTRTERDTPLRR--RKPH---LFMSAIDG----RQSATADAAAPVKADKK-RKENASNTLLNVHVIGLSHHNAAVEVREKLAVPESEWNAESARLCENPSVLEASVLSTCNRFEVYVAAADAHAAIRETIQALQERSGLSQAVLRRSLFILSGEDAVWHVLRVSAGLDSLIVGEGQILSQVRQCYLHGTEEDGYAGKVVARLLNTAVSAGKRVRSETSISKG 321
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A4D9D291_9STRA (Glutamyl-tRNA reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D291_9STRA) HSP 1 Score: 235 bits (599), Expect = 4.590e-65 Identity = 113/170 (66.47%), Postives = 139/170 (81.76%), Query Frame = 2 Query: 515 RIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 R A + PL VHVIG+SHHN+AVEVREKL++PEA+WN+A+ KLC I EA LSTCNRFE+Y A+H+S AA + +FL++ SGLPQS LR+NLF+LS +DA+WHL+RVS GLDSLVVGEGQILSQVK CY HG EEDG GKV+SR+ N+AV+AGKR R+ET IS+G Sbjct: 153 RKATSMTPLEVHVIGLSHHNAAVEVREKLSIPEAQWNEAANKLCGSGVIAEACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQSVLRKNLFLLSGEDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKVISRMLNSAVAAGKRVRSETGISKG 322
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A448YUH3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUH3_9STRA) HSP 1 Score: 223 bits (568), Expect = 2.630e-63 Identity = 126/257 (49.03%), Postives = 169/257 (65.76%), Query Frame = 2 Query: 254 FQAPINSLSAVLNGAAGSASTFKAGFFTPQSIATPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAELDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 +Q+ I SL+AV+ A S++T + F QS A G R + T++ +V+ D A + + R R+ AASK L VH +G+S H++ VEVREKLAV E +WN AS ++C ++ EA VLSTCNRFE+Y A+ + RAA+ V FL ++SGLP S+LR+NLFMLS DDAVWH++RV+ GLDSL+VGEGQILSQV+ C++H EEDG GKV+SRL N AV+AGKR R+ET IS+G Sbjct: 3 YQSAITSLAAVV---AASSATSVSSFVPTQSTARVA-----GVQSRATVQNTQLAVASSEIVDN----------DTEAARPRKTREERLEAASKGLQVHCVGLSIHHADVEVREKLAVAECDWNTASNEICNTGDVTEAAVLSTCNRFEIYYAASDPRAAMASVTKFLAKRSGLPVSELRKNLFMLSGDDAVWHIMRVAGGLDSLIVGEGQILSQVRQCHLHSIEEDGCGGKVLSRLLNNAVAAGKRVRSETGISKG 241
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S1U057_9STRA (Glutamyl-tRNA reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U057_9STRA) HSP 1 Score: 226 bits (575), Expect = 8.970e-63 Identity = 117/184 (63.59%), Postives = 145/184 (78.80%), Query Frame = 2 Query: 515 RIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEF--DNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTE------ED------GSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 R ++KPL VHV+G+SHHN+ VEVREKLAVPE +WN+AS+ +CEF NI EA VLSTCNRFEVYVAS ++RAA+ D +L ++SG+P S LR +LFMLS ++AVWHLLRV+ GLDSLVVGEGQIL+QVK+C+ GTE ED GSAGKVVS+L NTAV++GKR R+ET+ISRG Sbjct: 23 RAPGSTKPLEVHVVGLSHHNAEVEVREKLAVPEDQWNEASKAICEFGNQNIKEAAVLSTCNRFEVYVASSDARAAMYDATKYLSERSGIPMSKLRESLFMLSGEEAVWHLLRVAGGLDSLVVGEGQILAQVKACFERGTELPVEADEDREAVVGGSAGKVVSKLLNTAVASGKRVRSETAISRG 206
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S1ZJK3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJK3_TRICV) HSP 1 Score: 224 bits (572), Expect = 3.160e-62 Identity = 111/170 (65.29%), Postives = 137/170 (80.59%), Query Frame = 2 Query: 515 RIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 R+ AAS+ L VHV+G+S H++ VEVREKLAVPE++WN AS +CE + EA VLSTCNRFEVY A+ ++R A+ V +L +SGLP S LRRNLFMLS DDAVWHL+RVS GLDSLVVGEGQILSQV+ C++H EEDGS GKV+SR+ N AV+AGKR R+ET+IS+G Sbjct: 123 RLEAASRGLQVHVVGLSIHHADVEVREKLAVPESDWNAASASICESGEVAEAAVLSTCNRFEVYYAATDARRAMAAVTKYLSDRSGLPVSTLRRNLFMLSGDDAVWHLMRVSGGLDSLVVGEGQILSQVRQCHLHSIEEDGSGGKVLSRMLNQAVAAGKRVRSETAISKG 292
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A1Z5JLS3_FISSO (Glutamyl-tRNA reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLS3_FISSO) HSP 1 Score: 225 bits (574), Expect = 3.490e-62 Identity = 109/173 (63.01%), Postives = 140/173 (80.92%), Query Frame = 2 Query: 506 RARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 R R+ AA+K L VHV+G+S H++ VEVREKLA+PEAEWN AS ++C ++EA VLSTCNRFEVY A+ ++RAA+ V +L ++SG+P S LRRNLFMLS DDAVWH++RV+ GLDSL+VGEGQILSQV+ C++H EEDG GKV+SRL N AV+AGKR R+ET+IS+G Sbjct: 58 REERLEAATKGLQVHVVGLSIHHAEVEVREKLAIPEAEWNAASNEICANGKVNEAAVLSTCNRFEVYYAATDARAAMAHVTQYLSERSGIPVSALRRNLFMLSGDDAVWHIMRVAGGLDSLIVGEGQILSQVRQCHLHSIEEDGCGGKVLSRLLNNAVAAGKRVRSETAISKG 230
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S2Y509_9STRA (Glutamyl-tRNA reductase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y509_9STRA) HSP 1 Score: 222 bits (566), Expect = 3.790e-62 Identity = 109/173 (63.01%), Postives = 135/173 (78.03%), Query Frame = 2 Query: 506 RARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024 R R+ AASK L VHV+G+S H++ VEVREKLAVPE +WN AS +C + EA VLSTCNRFEVY A+ + AA+ DV +L +SGLP S LR+NLFMLS +DAVWH++RVS GLDSL+VGEGQILSQV+ CY+H EEDG GKV+SRL N A++AGKR R+ET+IS+G Sbjct: 30 REERLEAASKGLQVHVVGLSIHHAEVEVREKLAVPECDWNQASNDICSRGAVAEAAVLSTCNRFEVYYAASDPHAAMADVTKYLADRSGLPVSTLRKNLFMLSGEDAVWHVMRVSGGLDSLIVGEGQILSQVRQCYLHSVEEDGCGGKVLSRLLNNALAAGKRVRSETAISKG 202 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9946.1.2 >prot_C-tenellus_contig9946.1.2 ID=prot_C-tenellus_contig9946.1.2|Name=mRNA_C-tenellus_contig9946.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=315bp MGMIAGLSCPMRAVMRVIYIHLLLIYALFAGCEASTVPSSGGCPLSRIQLback to top mRNA from alignment at C-tenellus_contig9946:2452..5593+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9946.1.2 ID=mRNA_C-tenellus_contig9946.1.2|Name=mRNA_C-tenellus_contig9946.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3142bp|location=Sequence derived from alignment at C-tenellus_contig9946:2452..5593+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9946:2452..5593+ >mRNA_C-tenellus_contig9946.1.2 ID=mRNA_C-tenellus_contig9946.1.2|Name=mRNA_C-tenellus_contig9946.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=945bp|location=Sequence derived from alignment at C-tenellus_contig9946:2452..5593+ (Choristocarpus tenellus KU2346)back to top |