mRNA_C-tenellus_contig9946.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9946.1.2
Unique NamemRNA_C-tenellus_contig9946.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: D8LNJ4_ECTSI (Glutamyl-tRNA reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ4_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 2.560e-106
Identity = 195/312 (62.50%), Postives = 238/312 (76.28%), Query Frame = 2
Query:  113 AGLSCPMRAVMRVIYIHLLLIYALFAGCEASTVPSSGGCPLSRIQLAFQAPINSLSAVLNG--AAGSASTFKAGFFTPQSIA----TPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAE--LDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            A   CP    +RV+Y+H +L+ A F   EA T  + GGCP+SR+Q AFQAP NSLS  L+G  A  S+ T +    +P   A     PRW+SE      V+ R  +V  LGMS VET  G KR+AE   +EA + KA+K+ARRIAA+S PLSVHVIG+SHHN+ V+VRE+LAVPEAEWN AS KLC ++NI EA VLSTCNRFEVYVA+ ++ AAI+DV++ LQ+ SGL QS+LR+NLFMLS +DAVWHLLRVSAGLDSLVVGEGQILSQV+ CY+HGTE+DGSAGKVV+R+ NTAVSAGKRARAETSIS+G
Sbjct:    6 ASAGCPF---VRVLYLHFVLLLAFFTSVEA-TAMTKGGCPVSRLQAAFQAPFNSLSLALHGQQATMSSLTARDRSSSPPIAAGNTGAPRWVSEGVRSRVVRSRTVDVKPLGMSAVETKPGNKRAAEGEPEEAKETKAQKKARRIAASSTPLSVHVIGLSHHNAGVDVRERLAVPEAEWNLASAKLCGYENIREAAVLSTCNRFEVYVAATDAHAAIRDVMTHLQEYSGLSQSELRQNLFMLSREDAVWHLLRVSAGLDSLVVGEGQILSQVRQCYLHGTEKDGSAGKVVARMLNTAVSAGKRARAETSISKG 313          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S2V0V0_9STRA (Glutamyl-tRNA reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0V0_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.790e-75
Identity = 150/283 (53.00%), Postives = 190/283 (67.14%), Query Frame = 2
Query:  182 LFAGCEASTVPSSGGCPL--SRIQLAFQAPINSLSAVLNGAAGSASTFKAGFFTPQSIATPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAELDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            LF      T   S GCP    R+  AFQ P+ +++ ++N         KA    P+  + P    +  S +R    ++   R   +V +T        ELD AA+KKA KR +R+A +SKPL VHVIG+SHHN+ V VREKLAVPEA+WN  S +L   + IDEA +LSTCNRFEVYV +H +  AI+D + FL ++SGLPQS+LR+NLF+LS +DA  H+LRVS GLDSLVVGEGQILSQV+ CY+HG EEDGSAGKV SR+ N AVSAGKR RAET+ISRG
Sbjct:   20 LFLSHATPTFSRSNGCPFHPDRLLSAFQNPLTAVNGIVNS--------KAPPTLPRISSVPANSWQPASIVRQTVTQSLAPRFSSTVDQT--------ELDTAAEKKA-KRDKRLAQSSKPLDVHVIGLSHHNADVSVREKLAVPEADWNTVSAQLVAMEGIDEAAILSTCNRFEVYVGAHEAHEAIRDTILFLSERSGLPQSELRKNLFILSGEDATKHVLRVSGGLDSLVVGEGQILSQVRQCYLHGIEEDGSAGKVTSRMLNVAVSAGKRVRAETAISRG 285          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A836CGD2_9STRA (Glutamyl-tRNA reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD2_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.270e-71
Identity = 126/174 (72.41%), Postives = 151/174 (86.78%), Query Frame = 2
Query:  503 KRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            K+A+R   ++ PL VHVIG+SHHN+A+EVREKLAVPEA WN  S  LCE D+I EA VLSTCNRFE Y+A+H++ AAI++ ++ LQQ+SGL Q+ LRR+LF+LS +DAVWHLLRVSAGLDSLVVGEGQILSQV+ CY+HGTEE GSAGKVV+RL NTAVSAGKRARAETSIS+G
Sbjct:  130 KKAKRKENSTAPLQVHVIGLSHHNAALEVREKLAVPEANWNMESEALCEQDSIVEAAVLSTCNRFETYIAAHDAHAAIRETIAHLQQRSGLSQATLRRSLFILSGEDAVWHLLRVSAGLDSLVVGEGQILSQVRQCYLHGTEEGGSAGKVVARLLNTAVSAGKRARAETSISKG 303          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A836C898_9STRA (Glutamyl-tRNA reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C898_9STRA)

HSP 1 Score: 248 bits (633), Expect = 7.320e-70
Identity = 160/327 (48.93%), Postives = 219/327 (66.97%), Query Frame = 2
Query:  116 GLSCPMRAV-----MRVIYIHLLLIYA---LFAGCEASTVPSSGG-----CPLSRIQ----LAFQ-------APINSLSAVLNGAAGSASTFKAGFFTPQSIATPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAELDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            G  CP++ +     +R++++H+LL  +   L +G + +  PS        CPL+R       AFQ        P+ +++     +   +++     FT    A PR  +E  +PLR   RK     L MS ++     ++SA  D AA  KA+K+ R+  A++  L+VHVIG+SHHN+AVEVREKLAVPE+EWN  S +LCE  ++ EA VLSTCNRFEVYVA+ ++ AAI++ +  LQ++SGL Q+ LRR+LF+LS +DAVWH+LRVSAGLDSL+VGEGQILSQV+ CY+HGTEEDG AGKVV+RL NTAVSAGKR R+ETSIS+G
Sbjct:    7 GGKCPIKRITQSVLVRLVWLHVLLFLSFLGLGSGHDNTASPSVRAASWSKCPLARASRFASTAFQHSPHPDALPVKAITCTAGPSQIHSASPPRSQFT--LAAFPRTRTERDTPLRR--RKPH---LFMSAIDG----RQSATADAAAPVKADKK-RKENASNTLLNVHVIGLSHHNAAVEVREKLAVPESEWNAESARLCENPSVLEASVLSTCNRFEVYVAAADAHAAIRETIQALQERSGLSQAVLRRSLFILSGEDAVWHVLRVSAGLDSLIVGEGQILSQVRQCYLHGTEEDGYAGKVVARLLNTAVSAGKRVRSETSISKG 321          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A4D9D291_9STRA (Glutamyl-tRNA reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D291_9STRA)

HSP 1 Score: 235 bits (599), Expect = 4.590e-65
Identity = 113/170 (66.47%), Postives = 139/170 (81.76%), Query Frame = 2
Query:  515 RIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            R A +  PL VHVIG+SHHN+AVEVREKL++PEA+WN+A+ KLC    I EA  LSTCNRFE+Y A+H+S AA  +  +FL++ SGLPQS LR+NLF+LS +DA+WHL+RVS GLDSLVVGEGQILSQVK CY HG EEDG  GKV+SR+ N+AV+AGKR R+ET IS+G
Sbjct:  153 RKATSMTPLEVHVIGLSHHNAAVEVREKLSIPEAQWNEAANKLCGSGVIAEACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQSVLRKNLFLLSGEDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKVISRMLNSAVAAGKRVRSETGISKG 322          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A448YUH3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUH3_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.630e-63
Identity = 126/257 (49.03%), Postives = 169/257 (65.76%), Query Frame = 2
Query:  254 FQAPINSLSAVLNGAAGSASTFKAGFFTPQSIATPRWMSEYGSPLRVQPRKTEVGRLGMSVVETSSGKKRSAELDEAAQKKAEKRARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            +Q+ I SL+AV+   A S++T  + F   QS A        G   R   + T++      +V+           D  A +  + R  R+ AASK L VH +G+S H++ VEVREKLAV E +WN AS ++C   ++ EA VLSTCNRFE+Y A+ + RAA+  V  FL ++SGLP S+LR+NLFMLS DDAVWH++RV+ GLDSL+VGEGQILSQV+ C++H  EEDG  GKV+SRL N AV+AGKR R+ET IS+G
Sbjct:    3 YQSAITSLAAVV---AASSATSVSSFVPTQSTARVA-----GVQSRATVQNTQLAVASSEIVDN----------DTEAARPRKTREERLEAASKGLQVHCVGLSIHHADVEVREKLAVAECDWNTASNEICNTGDVTEAAVLSTCNRFEIYYAASDPRAAMASVTKFLAKRSGLPVSELRKNLFMLSGDDAVWHIMRVAGGLDSLIVGEGQILSQVRQCHLHSIEEDGCGGKVLSRLLNNAVAAGKRVRSETGISKG 241          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S1U057_9STRA (Glutamyl-tRNA reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U057_9STRA)

HSP 1 Score: 226 bits (575), Expect = 8.970e-63
Identity = 117/184 (63.59%), Postives = 145/184 (78.80%), Query Frame = 2
Query:  515 RIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEF--DNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTE------ED------GSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            R   ++KPL VHV+G+SHHN+ VEVREKLAVPE +WN+AS+ +CEF   NI EA VLSTCNRFEVYVAS ++RAA+ D   +L ++SG+P S LR +LFMLS ++AVWHLLRV+ GLDSLVVGEGQIL+QVK+C+  GTE      ED      GSAGKVVS+L NTAV++GKR R+ET+ISRG
Sbjct:   23 RAPGSTKPLEVHVVGLSHHNAEVEVREKLAVPEDQWNEASKAICEFGNQNIKEAAVLSTCNRFEVYVASSDARAAMYDATKYLSERSGIPMSKLRESLFMLSGEEAVWHLLRVAGGLDSLVVGEGQILAQVKACFERGTELPVEADEDREAVVGGSAGKVVSKLLNTAVASGKRVRSETAISRG 206          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S1ZJK3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJK3_TRICV)

HSP 1 Score: 224 bits (572), Expect = 3.160e-62
Identity = 111/170 (65.29%), Postives = 137/170 (80.59%), Query Frame = 2
Query:  515 RIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            R+ AAS+ L VHV+G+S H++ VEVREKLAVPE++WN AS  +CE   + EA VLSTCNRFEVY A+ ++R A+  V  +L  +SGLP S LRRNLFMLS DDAVWHL+RVS GLDSLVVGEGQILSQV+ C++H  EEDGS GKV+SR+ N AV+AGKR R+ET+IS+G
Sbjct:  123 RLEAASRGLQVHVVGLSIHHADVEVREKLAVPESDWNAASASICESGEVAEAAVLSTCNRFEVYYAATDARRAMAAVTKYLSDRSGLPVSTLRRNLFMLSGDDAVWHLMRVSGGLDSLVVGEGQILSQVRQCHLHSIEEDGSGGKVLSRMLNQAVAAGKRVRSETAISKG 292          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A1Z5JLS3_FISSO (Glutamyl-tRNA reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLS3_FISSO)

HSP 1 Score: 225 bits (574), Expect = 3.490e-62
Identity = 109/173 (63.01%), Postives = 140/173 (80.92%), Query Frame = 2
Query:  506 RARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            R  R+ AA+K L VHV+G+S H++ VEVREKLA+PEAEWN AS ++C    ++EA VLSTCNRFEVY A+ ++RAA+  V  +L ++SG+P S LRRNLFMLS DDAVWH++RV+ GLDSL+VGEGQILSQV+ C++H  EEDG  GKV+SRL N AV+AGKR R+ET+IS+G
Sbjct:   58 REERLEAATKGLQVHVVGLSIHHAEVEVREKLAIPEAEWNAASNEICANGKVNEAAVLSTCNRFEVYYAATDARAAMAHVTQYLSERSGIPVSALRRNLFMLSGDDAVWHIMRVAGGLDSLIVGEGQILSQVRQCHLHSIEEDGCGGKVLSRLLNNAVAAGKRVRSETAISKG 230          
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Match: A0A7S2Y509_9STRA (Glutamyl-tRNA reductase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y509_9STRA)

HSP 1 Score: 222 bits (566), Expect = 3.790e-62
Identity = 109/173 (63.01%), Postives = 135/173 (78.03%), Query Frame = 2
Query:  506 RARRIAAASKPLSVHVIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFEVYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVSAGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRARAETSISRG 1024
            R  R+ AASK L VHV+G+S H++ VEVREKLAVPE +WN AS  +C    + EA VLSTCNRFEVY A+ +  AA+ DV  +L  +SGLP S LR+NLFMLS +DAVWH++RVS GLDSL+VGEGQILSQV+ CY+H  EEDG  GKV+SRL N A++AGKR R+ET+IS+G
Sbjct:   30 REERLEAASKGLQVHVVGLSIHHAEVEVREKLAVPECDWNQASNDICSRGAVAEAAVLSTCNRFEVYYAASDPHAAMADVTKYLADRSGLPVSTLRKNLFMLSGEDAVWHVMRVSGGLDSLIVGEGQILSQVRQCYLHSVEEDGCGGKVLSRLLNNALAAGKRVRSETAISKG 202          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9946.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ4_ECTSI2.560e-10662.50Glutamyl-tRNA reductase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V0V0_9STRA1.790e-7553.00Glutamyl-tRNA reductase n=1 Tax=Fibrocapsa japonic... [more]
A0A836CGD2_9STRA1.270e-7172.41Glutamyl-tRNA reductase n=1 Tax=Tribonema minus Ta... [more]
A0A836C898_9STRA7.320e-7048.93Glutamyl-tRNA reductase n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D291_9STRA4.590e-6566.47Glutamyl-tRNA reductase n=2 Tax=Monodopsidaceae Ta... [more]
A0A448YUH3_9STRA2.630e-6349.03Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1U057_9STRA8.970e-6363.59Glutamyl-tRNA reductase n=1 Tax=Phaeomonas parva T... [more]
A0A7S1ZJK3_TRICV3.160e-6265.29Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1Z5JLS3_FISSO3.490e-6263.01Glutamyl-tRNA reductase n=2 Tax=Fistulifera solari... [more]
A0A7S2Y509_9STRA3.790e-6263.01Glutamyl-tRNA reductase (Fragment) n=1 Tax=Amphipr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9946contigC-tenellus_contig9946:2452..5593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNJ4
Preferred nameHEMA
PFAMsGlutR_N,GlutR_dimer,Shikimate_DH
Model size2063
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00149
KEGG koko:K02492
KEGG ReactionR04109
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008883,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0015994,GO:0015995,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue1.89e-112
EggNOG OGsCOG0373@1|root,2QQ1H@2759|Eukaryota
EC1.2.1.70
Descriptionglutamyl-tRNA reductase activity
Cds size945
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.2095253-UTR-C-tenellus_contig9946:2451..25511680790208.2095253-UTR-C-tenellus_contig9946:2451..2551Choristocarpus tenellus KU2346UTRC-tenellus_contig9946 2452..2551 +
1680790208.2544906-UTR-C-tenellus_contig9946:4575..55931680790208.2544906-UTR-C-tenellus_contig9946:4575..5593Choristocarpus tenellus KU2346UTRC-tenellus_contig9946 4576..5593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790208.221569-CDS-C-tenellus_contig9946:2551..30911680790208.221569-CDS-C-tenellus_contig9946:2551..3091Choristocarpus tenellus KU2346CDSC-tenellus_contig9946 2552..3091 +
1680790208.2311084-CDS-C-tenellus_contig9946:3986..42441680790208.2311084-CDS-C-tenellus_contig9946:3986..4244Choristocarpus tenellus KU2346CDSC-tenellus_contig9946 3987..4244 +
1680790208.2412386-CDS-C-tenellus_contig9946:4428..45751680790208.2412386-CDS-C-tenellus_contig9946:4428..4575Choristocarpus tenellus KU2346CDSC-tenellus_contig9946 4429..4575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9946.1.2prot_C-tenellus_contig9946.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9946 2552..4575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9946.1.2

>prot_C-tenellus_contig9946.1.2 ID=prot_C-tenellus_contig9946.1.2|Name=mRNA_C-tenellus_contig9946.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=315bp
MGMIAGLSCPMRAVMRVIYIHLLLIYALFAGCEASTVPSSGGCPLSRIQL
AFQAPINSLSAVLNGAAGSASTFKAGFFTPQSIATPRWMSEYGSPLRVQP
RKTEVGRLGMSVVETSSGKKRSAELDEAAQKKAEKRARRIAAASKPLSVH
VIGVSHHNSAVEVREKLAVPEAEWNDASRKLCEFDNIDEAVVLSTCNRFE
VYVASHNSRAAIKDVVSFLQQKSGLPQSDLRRNLFMLSNDDAVWHLLRVS
AGLDSLVVGEGQILSQVKSCYMHGTEEDGSAGKVVSRLFNTAVSAGKRAR
AETSISRGKRPRVV*
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mRNA from alignment at C-tenellus_contig9946:2452..5593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9946.1.2 ID=mRNA_C-tenellus_contig9946.1.2|Name=mRNA_C-tenellus_contig9946.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3142bp|location=Sequence derived from alignment at C-tenellus_contig9946:2452..5593+ (Choristocarpus tenellus KU2346)
GAACCTTCCCTTGCCTCCTGTCTATATCTCCCACCAATCCCCTTTGTTGA TCCTCAACTCGTACACTACAAGTAATTGTGCTATCGATCTGTTGCTGGCA ATGGGAATGATTGCGGGGTTATCGTGCCCGATGAGAGCAGTTATGAGGGT AATCTACATCCACCTACTACTCATTTATGCCTTATTCGCTGGGTGTGAGG CCAGCACAGTGCCTTCGTCGGGTGGTTGCCCTCTTTCTCGCATCCAGTTG GCTTTCCAGGCACCTATTAACTCCTTGTCCGCAGTCCTAAATGGCGCTGC TGGCTCAGCTTCAACGTTCAAGGCAGGTTTTTTCACCCCGCAATCTATCG CTACCCCTCGATGGATGTCGGAATATGGATCCCCACTACGTGTTCAGCCT CGAAAGACAGAGGTCGGGCGTCTTGGCATGTCTGTGGTGGAAACTTCTTC AGGGAAGAAAAGGTCTGCTGAGTTGGATGAAGCAGCCCAAAAGAAGGCGG AAAAGAGGGCCCGTAGAATTGCAGCGGCATCGAAACCTCTTAGTGTGCAT GTAATTGGCGTCTCCCACCACAACTCCGCAGTCGAGGTCCGCGAGAAGCT TGCCGTACCAGAGGCTGAATGGAACGATGCTTCGAGAAAGGTGAGATTAG TTTCTGTTCTGTAGTGAGGCTATCTAACCACACGCTACCCTCACACGTCG ATCGATAGTATCTTAGAGGGGTGTGTGTTTGGGACATACTGTCCATTATG GGTTTGATGGAGTATTGTAAGATACCCAGTTTGATGCCCGTTTTGGAGGC GATTTTCCTTGGGATTTGGTTCAGGTTGGGGGATGGAAAAGGGAGGTGCG TTCAGATGAAGGAAATTACCCTTGCATTCGACATTTCCACTTGGATGATA CGAAATCACTACCAGATCAACAGGCCCCAAATGGACGCCTGACTCCTCCT CCAGGTCTTTCTCAGGTATGGCATCTTGATTAAACGAATCTCCTTAAAAC CTTAACGTAACTATCCAGGTCTTTCAATGTTGTTCCAACAGAGGGTGATG AAATTCGTAATTGCGATGAGCATGTGGAGTATGTGCAGATACTATGCTTT TACTCCAATCTTAAGCGGAAACGATTTGGATGGAAAGTATATCATGCAAC GGACTCCACCTAACGTGGGAGCCCCCCTGTAATGACACTTGACTGACCGT GAAGGATACCTTTAGAGGCAGGCGTAGGAACTGTGCTGTTTGCATACGTA GTTGAGATTATTTTAGGTGACGCATGCCTTAATAGGGGAATGGGAAACAA AATCAATTTGTGCTATGGAATTATTGAAGGGTATTATCACTTTGCCTCCT ACCTGTGTGATATTCCATGTTCTATTTTGTGATACTATATGATGCGTGGG AGTAGTCAGTCATCTCAAAACCGACAACTTGCAATACTTTTGGATCTTCT TTTTCCCAAAATTGAAGTTAACCTGAGTCTTGATGTACGTACGTTTTGTG TCCCATTACCACTTACGTATGTGCTGCGGATTTAGCTGTGTGAGTTCGAC AACATCGATGAGGCTGTTGTGCTGTCTACATGCAATCGATTTGAGGTGTA TGTTGCGTCTCACAACTCACGTGCAGCCATCAAGGATGTAGTTTCGTTTC TTCAGCAAAAATCAGGCTTGCCGCAGTCCGATCTTCGCCGGAACCTGTTC ATGCTGTCTAATGATGATGCTGTATGGCACTTACTGCGTGTCAGTGCTGG GCTGGACTCACTGGTAGTAGGAGAGGGACAGATTCTGTCGCAGGTGACTG ACGAGAATGCAAGGGATGAGATGAGATGAGGTGGGATGGTGGGAAAGGTA TCCCTTGTATTAATGTTGTGTGGGTGTGGGTTTGGGTATGCAAAGGTTTT TGTGAGTAAGAGTTGCAAAGAGGGGTGCAAAAATACTTCATAACTGATGT CCCTTCACTGAAATTTCTGTTTTGCAGGTTAAGAGTTGCTATATGCATGG GACAGAGGAGGATGGGTCGGCGGGTAAGGTTGTGTCGCGGCTGTTCAACA CAGCCGTGTCAGCAGGAAAACGGGCTCGTGCAGAGACAAGTATCAGCAGG GGTAAGCGACCAAGGGTTGTGTAACTTCTCAGGAGTTACTGTGAAAATGT TGAGAATAGTATGAGGGATCAGTGTCTAGTGTGATTGTTGCAAGGTCAAG GTTAAGGTGATCTTGGAGAAATATTTGTGGTGTATCATGTCAGCTGAAGC ATTTTGTATTTGCATCTTTGACAAGACTGATCAGTCAGCTATTATTTTTG TGGCAAACTAAATTATATTACAATTTGTGAGCACTGTATTGTTGATGTTG ATGTTGACTGTACACCTGATGATAGATCTGTTATGTTGCTGTTGTGCAGA AGCAGATGAGGTTAAGCATTGATATCCTGATTGACAATAGAATACAAGAG ATGTGGTTTGAGAGATGCTCACTCATGGCTTTTGGATGCCTGTTACTCCT TTGTCTCTGCCTTATTTTCCACATTGCAGTGGAAACAGTGTTGACTAACA ACCTAAAATATATAGAAATTATTTTATCTTCTAGCTGAGGAAAATGTCTC TATTGTCTACTTTGTTGTGCTTGCTGAGGGAGGTTTTTCTGTTACTGAGG GTATTGTCTGAGGGTAGCAACTCAGAATTTGTGCGTGTGTGAAGGGTTAT GTAGATAACAAGACTTTTGAAACAGATGCGTTCAACACTTCTATTGTTTG GGACTGCTAATTGAGTTGACTGTATCAAAATATATGCTGTCAAGTGTTGA GTTGCTGGGATTTTTTTTTCGGATGGGTAACCTACCTGGTAATGATCTAA GTGGATTGGGTCTGATGCCTCTTTATTTGGTATTTTGGGCTATGTCTGCT AAAAACACTTACCTCACACTTTTGCAAAACCTTTTCTACTTGTGAGTTAC AAAGTATTTCTCTGATTGTATTGATACAATCTTTCTCACTATTCAGAGGA ACACAGATACCCAATTTTTTTGTGAGAGGGTTTCTTTGTCCATCGGTCTA ACTTTTCATGTGATCTGGGATTGTGCTAAATTATTCCATTTCTTACATTT TTTTTTTTGATCTTTGTATATTTCCCCCCTTTTTGTCTGCTT
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Coding sequence (CDS) from alignment at C-tenellus_contig9946:2452..5593+

>mRNA_C-tenellus_contig9946.1.2 ID=mRNA_C-tenellus_contig9946.1.2|Name=mRNA_C-tenellus_contig9946.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=945bp|location=Sequence derived from alignment at C-tenellus_contig9946:2452..5593+ (Choristocarpus tenellus KU2346)
ATGGGAATGATTGCGGGGTTATCGTGCCCGATGAGAGCAGTTATGAGGGT
AATCTACATCCACCTACTACTCATTTATGCCTTATTCGCTGGGTGTGAGG
CCAGCACAGTGCCTTCGTCGGGTGGTTGCCCTCTTTCTCGCATCCAGTTG
GCTTTCCAGGCACCTATTAACTCCTTGTCCGCAGTCCTAAATGGCGCTGC
TGGCTCAGCTTCAACGTTCAAGGCAGGTTTTTTCACCCCGCAATCTATCG
CTACCCCTCGATGGATGTCGGAATATGGATCCCCACTACGTGTTCAGCCT
CGAAAGACAGAGGTCGGGCGTCTTGGCATGTCTGTGGTGGAAACTTCTTC
AGGGAAGAAAAGGTCTGCTGAGTTGGATGAAGCAGCCCAAAAGAAGGCGG
AAAAGAGGGCCCGTAGAATTGCAGCGGCATCGAAACCTCTTAGTGTGCAT
GTAATTGGCGTCTCCCACCACAACTCCGCAGTCGAGGTCCGCGAGAAGCT
TGCCGTACCAGAGGCTGAATGGAACGATGCTTCGAGAAAGCTGTGTGAGT
TCGACAACATCGATGAGGCTGTTGTGCTGTCTACATGCAATCGATTTGAG
GTGTATGTTGCGTCTCACAACTCACGTGCAGCCATCAAGGATGTAGTTTC
GTTTCTTCAGCAAAAATCAGGCTTGCCGCAGTCCGATCTTCGCCGGAACC
TGTTCATGCTGTCTAATGATGATGCTGTATGGCACTTACTGCGTGTCAGT
GCTGGGCTGGACTCACTGGTAGTAGGAGAGGGACAGATTCTGTCGCAGGT
TAAGAGTTGCTATATGCATGGGACAGAGGAGGATGGGTCGGCGGGTAAGG
TTGTGTCGCGGCTGTTCAACACAGCCGTGTCAGCAGGAAAACGGGCTCGT
GCAGAGACAAGTATCAGCAGGGGTAAGCGACCAAGGGTTGTGTAA
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