mRNA_C-tenellus_contig9932.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9932.1.1
Unique NamemRNA_C-tenellus_contig9932.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9932.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9932contigC-tenellus_contig9932:2181..5282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog45351.EDO35365
Model size1050
Max annot lvl45351.EDO35365|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000106
EggNOG OGs2EQQW@1|root,2STPK@2759|Eukaryota
Cds size987
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.8091874-CDS-C-tenellus_contig9932:2180..24381680790207.8091874-CDS-C-tenellus_contig9932:2180..2438Choristocarpus tenellus KU2346CDSC-tenellus_contig9932 2181..2438 -
1680790207.8231604-CDS-C-tenellus_contig9932:2795..30441680790207.8231604-CDS-C-tenellus_contig9932:2795..3044Choristocarpus tenellus KU2346CDSC-tenellus_contig9932 2796..3044 -
1680790207.8369465-CDS-C-tenellus_contig9932:4739..52191680790207.8369465-CDS-C-tenellus_contig9932:4739..5219Choristocarpus tenellus KU2346CDSC-tenellus_contig9932 4740..5219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.8476424-UTR-C-tenellus_contig9932:5219..52821680790207.8476424-UTR-C-tenellus_contig9932:5219..5282Choristocarpus tenellus KU2346UTRC-tenellus_contig9932 5220..5282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9932.1.1prot_C-tenellus_contig9932.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9932 2181..5219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9932.1.1

>prot_C-tenellus_contig9932.1.1 ID=prot_C-tenellus_contig9932.1.1|Name=mRNA_C-tenellus_contig9932.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=329bp
MCSMITQVSGGALEESYEASKGQIPQEMVVHRVISPSSKREGAYESDDRL
ERIDIFLPIGPKDSLFAPFLFRSLELFTPCYGDLVVLIEPQSISMLFSVI
PLYAYVFVVGEPLPPQFGYLTQQFLKMYADVFTSNDYVLILETDLVQSSS
AVREGYFDEQGKIMSNCRMFGDVKWCGENCDIWKVGTEHALGVPMDRDCL
MKSPFLYPREIFGRVRNHIENHLGKPLIHIMEDYFAGHSKGWEVTDTLFS
ELNILNMYGRLYMPEEFNFITIDRHGIDSHICFRHVGSQVRRNYDIWNPK
ATEQYFELAQKYVYEEACRRDPTSRGCG*
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mRNA from alignment at C-tenellus_contig9932:2181..5282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9932.1.1 ID=mRNA_C-tenellus_contig9932.1.1|Name=mRNA_C-tenellus_contig9932.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3102bp|location=Sequence derived from alignment at C-tenellus_contig9932:2181..5282- (Choristocarpus tenellus KU2346)
TCAACAAGGGGGTAAACGATGGTGTCTTCCTGGAGATTCTTGACATGAGT
GAGCATCTTTACAATGTGCAGCATGATCACACAGGTTTCTGGTGGCGCGC
TTGAGGAGTCGTACGAAGCGTCAAAGGGTCAGATACCTCAAGAAATGGTT
GTGCATCGTGTCATTTCGCCATCCAGTAAAAGAGAAGGAGCCTACGAGTC
AGATGATCGTTTGGAGAGGATTGATATATTTCTTCCTATTGGACCGAAAG
ACTCGCTATTCGCCCCGTTTCTGTTTCGAAGTTTGGAGCTCTTTACGCCA
TGCTACGGTGACCTTGTGGTACTCATAGAACCTCAGTCGATCAGCATGCT
GTTCTCAGTGATCCCGCTTTATGCATATGTCTTCGTGGTGGGTGAACCTC
TTCCCCCTCAGTTTGGATACCTAACACAACAATTTCTAAAGATGTATGCT
GATGTCTTTACGTCGAATGACTATGTGCTCATCCTGGAGACGGACCTTGT
ACAATCCAGCAGTGCTGTTAGGGAAGGATATTTCGACGAGCAGGTGCGTT
CAAATAGGCAATGGTGTGATACACTGGAACATGCGTATTCACAAATAGAG
ATCGTTAATTAGAAGCGGGTTGTCGGTGTGCATCAAGCGAAGGTCAAACC
ATACTTGCGACTTTTTTCTAAACGTCAACGGATTGGTTGTTCCACTGCTG
GAGCTGTGTTGTAGCAAGAGGAATTTGGCATTTCTCGGAATAATCCTGAT
TATTGGAAGACCCCTACGTCAATTTCCTGTACGTCGTAGGCACTACACGC
AAAAGCGAACCTACATCCAGAGATACATGAAGAGTCAAAGTATCTTAGAG
GGTAGAGCTGTTTCTGTTTGGGGGCCAAATCTAATGTTACGGTTTTGATG
TAATTTTGGTTATCATGTTTATTAGGAAGTGTCAATATCCTTTTACCGGA
CACACCTTTTCATGACGTACACATTTTACCTACTCCGAAACACTGCCGAG
TAGGTAAAACAGATGAAAAAACGTAGGAAGCCAAGCCCCAAACGGACAAA
CATGGCAAAACTCGTACCCTCTAAGATACTCTGGCTTTGAAACTGTCGTC
GGCCACTCCCAACCCCCATATTTGGAGGACCCTATTGATTTGATTTCATG
ACTGGCATGGTCTTGGACTTTGGTCCCGTAATATCTCAGATAAAGGGGTG
CTTGGGAATATTCACCATTTTGAGCTCTTGGTGCGGTCGAGACCTGGAAC
CTATGTGCGTGTAGTCCAAGCAAACACTGGAATATATAGCAACAGCATAT
ATATATATATATATATATATATATTGTCATTCAACACCACGCACGCTGCA
ATTCTTGTACAAAGAGTTTTTGGATAACAACTAGAAATACCGTTTACCAT
GGTTTTTGCCATTGATCATTACCAGTGTGCATTCCCCTCGTAGAAATAAA
AGGAACATACTCCTTCTAGTAGTCATCTGGAGAAGCAGTAGGCAATGATC
ATTGGCGAATCTCCAACATCGGGGATCGATTTCTGAGCTCAGCACTTCAT
TCTCACAAAGAGAGGTCATGGGTAAGATATTTCCATAGTAGTATTTGTGG
TCGTGTTAATCTAGTATTATAACACTCTTAGAAGCAGAACTTTTCCTCAT
CACCAGCGAGCCTTGAGTAATTGATTGGGCTAAGTGTATACCCCCACGTT
TGCTCAGAGTAGTTCTACCCTACTTTGTACAATAATTCCAACTGTGACCA
TTCCAAGATACTACAATACATTTTAAGGTCACTACATCATCTATGCTTGT
TTTTGCTCCATTGCTAGTACTCTGATGCATTCTTGAGTACTACATCTGAG
CGACTGTCTGTGCTCTTTTCCTATTGATGACCAGCATGTTGATTATTCAA
CGTTCAAAGTGCCCTTTCAATCTACAAGAGAGGTGACCCCTGCTGCAGGT
GCCAGTCAGGACTGAACTGTGAACTTAGAGTGTGCTTCTTGTTTCAAACG
TTTGTGGTGCCAGGTAGGGTGCACTTAAGCATTGGTGTTATCAGACAATA
GTTGGAAACATTTAAAAATCAGTCAATGCATGCTTCAGAGGTCTATTGTT
AGTGTTCAGGGCGCGAACCAGGTTTGCAATTCCTATCTCTGATGTGATAG
ACTATTTGAATGAACAGAAATGCCGTACTGTTCCAAAAACTCATCATTTT
ACCTTGTTTGTAAACCACCCTCATGTTCTTGTGAGCAGGGAAAGATCATG
AGCAATTGTCGCATGTTTGGAGACGTGAAGTGGTGTGGAGAGAACTGCGA
CATCTGGAAGGTAGGAACAGAACATGCTCTAGGCGTCCCCATGGACCGAG
ACTGTCTGATGAAGTCACCATTTTTATATCCCAGGGAGATTTTCGGGAGG
GTGCGTAATCATATTGAAAATCATCTTGGGAAACCTCTTATTCACATCAT
GGAAGACTACTTCGCCGGGCACAGCAAGGGGTGGGAGGTGAGCAAACTTC
TGAAGTAGGCCAATGTTGCCCAGTTTAATTGCTCAACTGCCCGCTGCAAA
TTGCATTCAGGAGCTCACAAACTTAGCCTTGGGCGAACATTTGGTTTGAA
CCTAGATCCTGTTCGGATGTGAAAGGTATCCTTTGATTGTAAACAAAATC
AAAGCAGCATTGAAGCAGATTAGCACCGTACGGAGGATATGTAGGTACTT
TATTACATATAGCAGGTACAATAACAAAGGCACTCTTCCTAGTGTGATGC
GCATGCAATGCAGGGAAGATGTCCTCTGACCTTCAACATAAAATATACCT
TTACCCTCCTGGGCTTTATTCTTACCCCCTCATCGCACGACAAGGTAACG
GATACATTATTCTCTGAGCTCAACATCCTCAACATGTATGGTCGGCTGTA
CATGCCAGAGGAATTCAACTTCATAACGATTGATCGCCACGGGATCGACA
GTCATATTTGTTTCAGACATGTGGGTAGTCAGGTCCGGCGCAACTATGAT
ATTTGGAACCCAAAGGCAACTGAGCAGTACTTTGAACTAGCGCAGAAGTA
TGTATACGAAGAAGCTTGCAGAAGGGACCCAACAAGCCGTGGATGTGGGT
AA
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Coding sequence (CDS) from alignment at C-tenellus_contig9932:2181..5282-

>mRNA_C-tenellus_contig9932.1.1 ID=mRNA_C-tenellus_contig9932.1.1|Name=mRNA_C-tenellus_contig9932.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=987bp|location=Sequence derived from alignment at C-tenellus_contig9932:2181..5282- (Choristocarpus tenellus KU2346)
ATGTGCAGCATGATCACACAGGTTTCTGGTGGCGCGCTTGAGGAGTCGTA
CGAAGCGTCAAAGGGTCAGATACCTCAAGAAATGGTTGTGCATCGTGTCA
TTTCGCCATCCAGTAAAAGAGAAGGAGCCTACGAGTCAGATGATCGTTTG
GAGAGGATTGATATATTTCTTCCTATTGGACCGAAAGACTCGCTATTCGC
CCCGTTTCTGTTTCGAAGTTTGGAGCTCTTTACGCCATGCTACGGTGACC
TTGTGGTACTCATAGAACCTCAGTCGATCAGCATGCTGTTCTCAGTGATC
CCGCTTTATGCATATGTCTTCGTGGTGGGTGAACCTCTTCCCCCTCAGTT
TGGATACCTAACACAACAATTTCTAAAGATGTATGCTGATGTCTTTACGT
CGAATGACTATGTGCTCATCCTGGAGACGGACCTTGTACAATCCAGCAGT
GCTGTTAGGGAAGGATATTTCGACGAGCAGGGAAAGATCATGAGCAATTG
TCGCATGTTTGGAGACGTGAAGTGGTGTGGAGAGAACTGCGACATCTGGA
AGGTAGGAACAGAACATGCTCTAGGCGTCCCCATGGACCGAGACTGTCTG
ATGAAGTCACCATTTTTATATCCCAGGGAGATTTTCGGGAGGGTGCGTAA
TCATATTGAAAATCATCTTGGGAAACCTCTTATTCACATCATGGAAGACT
ACTTCGCCGGGCACAGCAAGGGGTGGGAGGTAACGGATACATTATTCTCT
GAGCTCAACATCCTCAACATGTATGGTCGGCTGTACATGCCAGAGGAATT
CAACTTCATAACGATTGATCGCCACGGGATCGACAGTCATATTTGTTTCA
GACATGTGGGTAGTCAGGTCCGGCGCAACTATGATATTTGGAACCCAAAG
GCAACTGAGCAGTACTTTGAACTAGCGCAGAAGTATGTATACGAAGAAGC
TTGCAGAAGGGACCCAACAAGCCGTGGATGTGGGTAA
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