mRNA_C-tenellus_contig9926.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9926.1.1
Unique NamemRNA_C-tenellus_contig9926.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9926.1.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI)

HSP 1 Score: 47.0 bits (110), Expect = 9.180e-5
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 MLETLQANFVARVEWRIHRKMEAHRGRAVMRAAEKEL 111
            MLE ++AN  AR++WR  RK +AHRGRAV+RAA++ L
Sbjct:  189 MLEIIKANHAARLQWRAQRKQDAHRGRAVLRAAKRAL 225
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9926.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8M0_ECTSI9.180e-559.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9926contigC-tenellus_contig9926:205..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.492-CDS-C-tenellus_contig9926:204..3331680790207.492-CDS-C-tenellus_contig9926:204..333Choristocarpus tenellus KU2346CDSC-tenellus_contig9926 205..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9926.1.1prot_C-tenellus_contig9926.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9926 205..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9926.1.1

>prot_C-tenellus_contig9926.1.1 ID=prot_C-tenellus_contig9926.1.1|Name=mRNA_C-tenellus_contig9926.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=43bp
MLETLQANFVARVEWRIHRKMEAHRGRAVMRAAEKELQKEARR
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mRNA from alignment at C-tenellus_contig9926:205..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9926.1.1 ID=mRNA_C-tenellus_contig9926.1.1|Name=mRNA_C-tenellus_contig9926.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=129bp|location=Sequence derived from alignment at C-tenellus_contig9926:205..333+ (Choristocarpus tenellus KU2346)
ATGCTGGAAACACTTCAAGCTAATTTTGTAGCTCGTGTTGAGTGGAGAAT
CCATCGAAAGATGGAGGCACATCGAGGAAGGGCTGTTATGCGTGCTGCCG
AGAAAGAACTACAGAAAGAGGCACGAAGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9926:205..333+

>mRNA_C-tenellus_contig9926.1.1 ID=mRNA_C-tenellus_contig9926.1.1|Name=mRNA_C-tenellus_contig9926.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=129bp|location=Sequence derived from alignment at C-tenellus_contig9926:205..333+ (Choristocarpus tenellus KU2346)
ATGCTGGAAACACTTCAAGCTAATTTTGTAGCTCGTGTTGAGTGGAGAAT
CCATCGAAAGATGGAGGCACATCGAGGAAGGGCTGTTATGCGTGCTGCCG
AGAAAGAACTACAGAAAGAGGCACGAAGA
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