mRNA_C-tenellus_contig9894.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9894.2.1
Unique NamemRNA_C-tenellus_contig9894.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9894.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9894contigC-tenellus_contig9894:402..1380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790206.401876-UTR-C-tenellus_contig9894:401..4101680790206.401876-UTR-C-tenellus_contig9894:401..410Choristocarpus tenellus KU2346UTRC-tenellus_contig9894 402..410 +
1680790206.4397516-UTR-C-tenellus_contig9894:1329..13801680790206.4397516-UTR-C-tenellus_contig9894:1329..1380Choristocarpus tenellus KU2346UTRC-tenellus_contig9894 1330..1380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790206.4124365-CDS-C-tenellus_contig9894:410..4841680790206.4124365-CDS-C-tenellus_contig9894:410..484Choristocarpus tenellus KU2346CDSC-tenellus_contig9894 411..484 +
1680790206.4233596-CDS-C-tenellus_contig9894:1298..13291680790206.4233596-CDS-C-tenellus_contig9894:1298..1329Choristocarpus tenellus KU2346CDSC-tenellus_contig9894 1299..1329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9894.2.1prot_C-tenellus_contig9894.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9894 411..1329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9894.2.1

>prot_C-tenellus_contig9894.2.1 ID=prot_C-tenellus_contig9894.2.1|Name=mRNA_C-tenellus_contig9894.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=35bp
MVIGTWTGEGIEGYVTLNACQVPSRRTIRATAAI*
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mRNA from alignment at C-tenellus_contig9894:402..1380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9894.2.1 ID=mRNA_C-tenellus_contig9894.2.1|Name=mRNA_C-tenellus_contig9894.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=979bp|location=Sequence derived from alignment at C-tenellus_contig9894:402..1380+ (Choristocarpus tenellus KU2346)
GCTGGGTGGATGGTTATTGGCACCTGGACAGGAGAAGGAATTGAAGGTTA
CGTCACACTGAATGCGTGTCAAGTCCCTTCCAGGTGATGACATACATATG
TCAGTGACGGAGGATACAGTATTCTTTGAGCATATCGATTGGTGGAAAGT
TTGTTTCTCATACCATCTGTGATTGCCATCTGCCCTTGTGTTGATTATGA
TTGTGCTCTTCATCTTGGCAGTAGTTCTGTATTGTCAATACCATGCAAGA
GTTTGAAAGCGACGAACAGTGTTTGGTTTTTGTTGGTAGCGAGGTTGGAT
GTAGCCTCGACAAGAAATATTTCATTTTGCTGTCCTCGATCTATTGACTT
GATACGCTACATTTATTGTTTGTATTTATGGCACGTCGTATCGTTGTTGG
GTCGAAACAACTGAGAGGTAGGCAGGGTTGCGTTATAAGGATCCTGAAAG
TGGGCAAAAATTGATGTTTGGTGAATGGTGGTGTCACTTTAGTGTTTGCA
CACAAAGAGGGAAAATTATTTTTGCATAAAATAGTTGCAAGCCCCCACAC
ATAGACATAAGGGTGAAGGGGGTTGATCTGTAAGGAAGTGGAACCAGGTC
AGTGTGATAGAACTGTAGATGCATCCGGGCAAGGTTCTTCTGGGAAGTGC
AATGTTGACCCTCCACCTTTACCAGGCGGACCATTTTGAGGAGTCAGGTG
GAGATGATACAATGAAATTTGTTTGAAGGCCTGAGGAACCAGGCAGTGAG
CGGGAGTTGGAAGAGGAGTCAGTGGGGTCAGATTGTGTATTGGGTACGGG
CATGGTTGACGTGGTTCAGAAGTCACAGCAGGGGAGGGGAGGAAGACATT
GATGCTGAAACGTTCAGATATCAACAGTGATCCTCCATCTAATCTAGGCG
CACCATCCGAGCGACAGCTGCCATATGAGAAGAGGCTGGTTGGTCTGCTT
GTTGGTGGGAAAGCGGAGAATGTGTTGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig9894:402..1380+

>mRNA_C-tenellus_contig9894.2.1 ID=mRNA_C-tenellus_contig9894.2.1|Name=mRNA_C-tenellus_contig9894.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=105bp|location=Sequence derived from alignment at C-tenellus_contig9894:402..1380+ (Choristocarpus tenellus KU2346)
ATGGTTATTGGCACCTGGACAGGAGAAGGAATTGAAGGTTACGTCACACT
GAATGCGTGTCAAGTCCCTTCCAGGCGCACCATCCGAGCGACAGCTGCCA
TATGA
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