mRNA_C-tenellus_contig9851.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9851.2.1
Unique NamemRNA_C-tenellus_contig9851.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: A0A7C2KFL5_9SPIR (DDE Tnp4 domain-containing protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C2KFL5_9SPIR)

HSP 1 Score: 64.7 bits (156), Expect = 3.860e-12
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRY 111
            ++R CKIFRI K  YRGKHKN+GK WN++A LVNLRY
Sbjct:   92 INRRCKIFRIVKETYRGKHKNYGKTWNVVAALVNLRY 128          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: A0A2S5CFM7_9GAMM (IS5/IS1182 family transposase n=10 Tax=Methylovulum psychrotolerans TaxID=1704499 RepID=A0A2S5CFM7_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 4.720e-12
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRYGE 117
            ++R CKIFRI K VYRGKHKN+   W+L+A LVNLRYG 
Sbjct:   41 VNRRCKIFRIVKDVYRGKHKNYSLTWSLVAALVNLRYGN 79          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: UPI001E4CFCE2 (transposase n=1 Tax=Methylovulum psychrotolerans TaxID=1704499 RepID=UPI001E4CFCE2)

HSP 1 Score: 63.2 bits (152), Expect = 7.370e-12
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRYGE 117
            ++R CKIFRI K VYRGKHKN+   W+L+A LVNLRYG 
Sbjct:   59 VNRRCKIFRIVKDVYRGKHKNYSLTWSLVAALVNLRYGN 97          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: A0A7C2KIY6_9SPIR (IS5/IS1182 family transposase n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C2KIY6_9SPIR)

HSP 1 Score: 61.6 bits (148), Expect = 7.880e-12
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRY 111
            ++R CKIFRI K  YRGKHKN+ K WN++A LVNLRY
Sbjct:    4 INRRCKIFRIVKETYRGKHKNYRKTWNVVAALVNLRY 40          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: UPI001FAD84FE (transposase n=3 Tax=Methylobacter sp. S3L5C TaxID=2839024 RepID=UPI001FAD84FE)

HSP 1 Score: 62.8 bits (151), Expect = 2.000e-11
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRYG 114
            ++R CKIFRI K VYRGKHK++   WNL+A LVNLRYG
Sbjct:   87 VNRRCKIFRIAKDVYRGKHKHYSLTWNLVAALVNLRYG 124          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: UPI00037B4950 (IS5/IS1182 family transposase n=1 Tax=Methylovulum miyakonense TaxID=645578 RepID=UPI00037B4950)

HSP 1 Score: 62.4 bits (150), Expect = 2.900e-11
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRY 111
            ++R CKIFRI K VYRGKHKN+   WNL+A LVNLRY
Sbjct:   88 VNRRCKIFRIVKDVYRGKHKNYSLTWNLVAALVNLRY 124          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: UPI001E5D9B12 (transposase n=1 Tax=Methylovulum psychrotolerans TaxID=1704499 RepID=UPI001E5D9B12)

HSP 1 Score: 57.8 bits (138), Expect = 5.650e-10
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLR 108
            ++R CKIFRI K VYRGKHKN+   W+L+A LVNLR
Sbjct:   40 VNRRCKIFRIVKDVYRGKHKNYSLTWSLVAALVNLR 75          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: A0A0S6VT88_9BACT (Transposase, IS4 family protein n=1 Tax=Candidatus Moduliflexus flocculans TaxID=1499966 RepID=A0A0S6VT88_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.290e-9
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRY 111
            ++R CKIFRI K  YRGKHK+ G  W+LIAGLVNLRY
Sbjct:  240 VNRRCKIFRIVKETYRGKHKHIGLTWHLIAGLVNLRY 276          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: G3IXG0_METTV (Transposase n=2 Tax=Methylobacter tundripaludum (strain ATCC BAA-1195 / DSM 17260 / SV96) TaxID=697282 RepID=G3IXG0_METTV)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-9
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRY 111
            ++R CK+FRI K VYRGKHKN+   W L+A LVNLRY
Sbjct:  239 VNRRCKVFRIVKDVYRGKHKNYSLTWRLVAALVNLRY 275          
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Match: UPI001F4F8908 (hypothetical protein n=1 Tax=Pontibacter sp. E15-1 TaxID=2919918 RepID=UPI001F4F8908)

HSP 1 Score: 53.5 bits (127), Expect = 7.830e-8
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLR 108
            ++R CKIFRI K  YRGKH+N+G  WNL+A + NL+
Sbjct:   78 VNRQCKIFRIVKDTYRGKHRNYGLNWNLVAAINNLK 113          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9851.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7C2KFL5_9SPIR3.860e-1270.27DDE Tnp4 domain-containing protein n=1 Tax=Spiroch... [more]
A0A2S5CFM7_9GAMM4.720e-1266.67IS5/IS1182 family transposase n=10 Tax=Methylovulu... [more]
UPI001E4CFCE27.370e-1266.67transposase n=1 Tax=Methylovulum psychrotolerans T... [more]
A0A7C2KIY6_9SPIR7.880e-1267.57IS5/IS1182 family transposase n=1 Tax=Spirochaetes... [more]
UPI001FAD84FE2.000e-1168.42transposase n=3 Tax=Methylobacter sp. S3L5C TaxID=... [more]
UPI00037B49502.900e-1170.27IS5/IS1182 family transposase n=1 Tax=Methylovulum... [more]
UPI001E5D9B125.650e-1066.67transposase n=1 Tax=Methylovulum psychrotolerans T... [more]
A0A0S6VT88_9BACT2.290e-970.27Transposase, IS4 family protein n=1 Tax=Candidatus... [more]
G3IXG0_METTV2.300e-964.86Transposase n=2 Tax=Methylobacter tundripaludum (s... [more]
UPI001F4F89087.830e-858.33hypothetical protein n=1 Tax=Pontibacter sp. E15-1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9851contigC-tenellus_contig9851:4322..4450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog697282.Mettu_0200
PFAMsDDE_Tnp_4,HTH_Tnp_4
Model size129
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.77e-10
EggNOG OGsCOG3293@1|root,2ZJP3@2|Bacteria,1R0G2@1224|Proteobacteria,1T4GQ@1236|Gammaproteobacteria
DescriptionDDE superfamily endonuclease
Cds size129
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790204.4871404-CDS-C-tenellus_contig9851:4321..44501680790204.4871404-CDS-C-tenellus_contig9851:4321..4450Choristocarpus tenellus KU2346CDSC-tenellus_contig9851 4322..4450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9851.2.1prot_C-tenellus_contig9851.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9851 4322..4450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9851.2.1

>prot_C-tenellus_contig9851.2.1 ID=prot_C-tenellus_contig9851.2.1|Name=mRNA_C-tenellus_contig9851.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=43bp
LDRCCKIFRITKGVYRGKHKNHGKVWNLIAGLVNLRYGESMI*
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mRNA from alignment at C-tenellus_contig9851:4322..4450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9851.2.1 ID=mRNA_C-tenellus_contig9851.2.1|Name=mRNA_C-tenellus_contig9851.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=129bp|location=Sequence derived from alignment at C-tenellus_contig9851:4322..4450+ (Choristocarpus tenellus KU2346)
TTAGATAGATGCTGTAAGATTTTCAGAATCACGAAAGGTGTGTACAGAGG CAAACATAAGAATCATGGTAAAGTATGGAACTTGATTGCTGGATTAGTAA ATCTTAGATATGGAGAATCTATGATTTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9851:4322..4450+

>mRNA_C-tenellus_contig9851.2.1 ID=mRNA_C-tenellus_contig9851.2.1|Name=mRNA_C-tenellus_contig9851.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=129bp|location=Sequence derived from alignment at C-tenellus_contig9851:4322..4450+ (Choristocarpus tenellus KU2346)
TTAGATAGATGCTGTAAGATTTTCAGAATCACGAAAGGTGTGTACAGAGG
CAAACATAAGAATCATGGTAAAGTATGGAACTTGATTGCTGGATTAGTAA
ATCTTAGATATGGAGAATCTATGATTTAA
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