mRNA_C-tenellus_contig9837.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9837.1.1
Unique NamemRNA_C-tenellus_contig9837.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9837.1.1 vs. uniprot
Match: D7G1G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-13
Identity = 52/111 (46.85%), Postives = 58/111 (52.25%), Query Frame = 3 
Query:  621 PLEMTGVGLDIAKGDNLPEPHQDQSKQHLQRGKRLRRKRLAEKVVTHWKKFAHEGMASIRARRHAEVKLGGHALRRWHTHATALRHERHSLAAAHARWHVLAESRTLNTWL 953
            P+++ GVGL   +                 R +RLRRKRLAEKVV HWK FA EG+A  RAR HA        L RW   ATALR  RH   A   RW  LAESR   TWL
Sbjct:    8 PVQVEGVGLARRQQQGESAXXXXXXXXXXXRLRRLRRKRLAEKVVAHWKDFAREGIAEARARAHASAAPRRRGLTRWRAGATALRSTRHRRTADAGRWRFLAESRGFATWL 118
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9837.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1G4_ECTSI1.500e-1346.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9837contigC-tenellus_contig9837:26..2276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1047
Hectar predicted targeting categoryother localisation
Exons2
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.8236833-CDS-C-tenellus_contig9837:25..4121680790203.8236833-CDS-C-tenellus_contig9837:25..412Choristocarpus tenellus KU2346CDSC-tenellus_contig9837 26..412 -
1680790203.836425-CDS-C-tenellus_contig9837:1617..19171680790203.836425-CDS-C-tenellus_contig9837:1617..1917Choristocarpus tenellus KU2346CDSC-tenellus_contig9837 1618..1917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.848154-UTR-C-tenellus_contig9837:1917..22761680790203.848154-UTR-C-tenellus_contig9837:1917..2276Choristocarpus tenellus KU2346UTRC-tenellus_contig9837 1918..2276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9837.1.1prot_C-tenellus_contig9837.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9837 26..1917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9837.1.1

>prot_C-tenellus_contig9837.1.1 ID=prot_C-tenellus_contig9837.1.1|Name=mRNA_C-tenellus_contig9837.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=229bp
MHPSSSCMGDAEIWRRRIRVADGLESGPYLDRIPDPAPREEKERDVAHQP
LMGDAIFAKLREPQEQLLPTPSIGNEMIVQRNVSFALPLEMTGVGLDIAK
GDNLPEPHQDQSKQHLQRGKRLRRKRLAEKVVTHWKKFAHEGMASIRARR
HAEVKLGGHALRRWHTHATALRHERHSLAAAHARWHVLAESRTLNTWLNF
VRHRIHAKQRQLTILNARRRRIPGQPGAA
back to top

mRNA from alignment at C-tenellus_contig9837:26..2276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9837.1.1 ID=mRNA_C-tenellus_contig9837.1.1|Name=mRNA_C-tenellus_contig9837.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2251bp|location=Sequence derived from alignment at C-tenellus_contig9837:26..2276- (Choristocarpus tenellus KU2346)
TGAAATTGTCAAACCGTCAAATAATCCTCTCAATTCCTACACAAACCTTT
TTGATTTTGAAAGTACTACACACCCCAAAAAAACAGGTGTTATTGCAGAG
ATGTTGTTGCCTTCTCGACAGGGACAACTACCCAGAGGAGATGGAAGATT
TAATTCGTAGAAATAGATACTCATCCAGCGTGGGAATCCCATAGAGTTCC
CGAAACTTTAGACGGGACTCCGACTGTGACTGCCTTGCTCTGTCAACAGC
CGACTTCTAGACTGTTGGTAGAGATCGATTTCCAAGGTCGTAGGGAGTGA
GGAGGTAGAACATAACCTGCCTATTTCAAAGTAACGCAACAGATCAAAAA
TTTCTTGATATGCACCCATCGAGCAGTTGCATGGGCGACGCAGAGATATG
GAGAAGGAGGATTAGGGTCGCGGATGGGCTGGAGAGTGGGCCATACCTCG
ATCGTATACCTGATCCTGCCCCGCGAGAAGAAAAGGAACGGGATGTTGCA
CACCAGCCGTTGATGGGTGATGCGATTTTTGCTAAACTTCGAGAACCTCA
GGAACAGTTATTACCCACACCGAGCATTGGAAATGAGATGATAGTTCAGC
GGAATGTTTCGTTTGCTCTCCCACTTGAGATGACTGGAGTGGGTCTGGAT
ATAGCGAAGGTGGGTGTAACCATTGTGCATGCATCACCCACCCGATTCCT
TATGTCTGCCACTAGGCCTTGATTCTATTTTCCTCTATGTCAGTGCCGTC
TTTGTGCGCGAAGAGATGCCCCAGCGTCTTTCATTTGAATCAAATTGGAG
TGAGCATCCCTCGTTTTGCCTCTCTCTCTCTCTCTCTCTCTATATATATA
TATATATATCCCCCCTCCCCCCTCTCCATTTGCGCCTCCGCGACCGTTTC
ATTGCACCTTTTCAATTTCCTCACCATCAACAACTTTGACGCTGTATAAA
TCGCTGGGCATGAGGGTTGCATCCACCTAACTTTTCTCGTTCTTTCAAAC
CGACCCGCGTGGTTCCGTTACTTGCGCCTTATCTCACTCGAAAAGATCCT
CGAAAGATGAGGACGCTGATGCTGTGCATACCCTTGCCCATGTATTCCCT
GAATGAGGGGACCACATACCAACAATACCTTGTTTAGGACATGCTTAGGT
TCACGATGATGCGTCCTTCTCTCGTCTGTCCCCACACAGCTTACTATTCT
CTATCTCAATTGTGCCTTTGCCAGGGCAAGGAATGAACTTTGATCCTCCC
ACCCCCATTTCTCGCCCCCCTACTTCCAACCTACAGACATCCCTCTCCAT
CCCTACACTTGTTGATCACCATCCTTATATTCACAACCCAACCCTGATCC
GAACATTAGGTTGTGACCATAACTCTCACCCCCCCTCCCCCTGACCCAGA
CCACTATGATATGTGTTCTATATGGGTTAGTGCTTGTGCCTACTCTTGAA
TCATGTTGTTGTTCGAAGTTAGGCATAAACCTAATTGTGATCCTTGACGG
CCCCAACTGTCCTGGTGGGACTATGCAACCAGCATTATGCGCCCTGCCTT
TATAAGCAATGCACCAGCTTCCTGCGCCAGTCTACGTTGCTTCTAATACA
CTTCTTGGCTCAATCTACCCCACTCTTCTATAGCAACGCATTGCTCCCTT
CTCATCTTGTTTTGAAATATTTTCCCTCTTTTTTCCTGTATAGGTAGCAG
ATCCATAAGCATGTGATAACCCACAATCATCAACACAGAGTCATCACAAT
GCCATTGGTATCCTTTGTGAACCACAATACTAATACAGATAGATACAGAT
AACACAAAATTAGCCCGAAATGCACCCTGCAATTGTGCACATACACATAC
ACATACACACGCAGGGGGACAACCTTCCAGAGCCGCACCAAGACCAATCC
AAACAACATCTACAGCGTGGTAAACGCCTCCGTCGCAAGCGCCTAGCAGA
AAAAGTCGTTACACACTGGAAGAAGTTTGCTCATGAGGGAATGGCATCCA
TCAGGGCCAGGCGGCATGCTGAGGTCAAGCTTGGGGGTCATGCTCTTCGC
CGCTGGCACACCCATGCCACAGCACTACGGCATGAACGCCATAGTCTCGC
TGCAGCTCATGCCAGGTGGCATGTCCTTGCTGAGTCTCGAACTCTCAACA
CCTGGCTCAACTTTGTACGTCATAGGATACATGCAAAGCAACGGCAATTA
ACCATCCTCAACGCCAGAAGGAGAAGAATCCCTGGTCAACCTGGTGCGGC
G
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9837:26..2276-

>mRNA_C-tenellus_contig9837.1.1 ID=mRNA_C-tenellus_contig9837.1.1|Name=mRNA_C-tenellus_contig9837.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=687bp|location=Sequence derived from alignment at C-tenellus_contig9837:26..2276- (Choristocarpus tenellus KU2346)
ATGCACCCATCGAGCAGTTGCATGGGCGACGCAGAGATATGGAGAAGGAG
GATTAGGGTCGCGGATGGGCTGGAGAGTGGGCCATACCTCGATCGTATAC
CTGATCCTGCCCCGCGAGAAGAAAAGGAACGGGATGTTGCACACCAGCCG
TTGATGGGTGATGCGATTTTTGCTAAACTTCGAGAACCTCAGGAACAGTT
ATTACCCACACCGAGCATTGGAAATGAGATGATAGTTCAGCGGAATGTTT
CGTTTGCTCTCCCACTTGAGATGACTGGAGTGGGTCTGGATATAGCGAAG
GGGGACAACCTTCCAGAGCCGCACCAAGACCAATCCAAACAACATCTACA
GCGTGGTAAACGCCTCCGTCGCAAGCGCCTAGCAGAAAAAGTCGTTACAC
ACTGGAAGAAGTTTGCTCATGAGGGAATGGCATCCATCAGGGCCAGGCGG
CATGCTGAGGTCAAGCTTGGGGGTCATGCTCTTCGCCGCTGGCACACCCA
TGCCACAGCACTACGGCATGAACGCCATAGTCTCGCTGCAGCTCATGCCA
GGTGGCATGTCCTTGCTGAGTCTCGAACTCTCAACACCTGGCTCAACTTT
GTACGTCATAGGATACATGCAAAGCAACGGCAATTAACCATCCTCAACGC
CAGAAGGAGAAGAATCCCTGGTCAACCTGGTGCGGCG
back to top