mRNA_C-tenellus_contig9832.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9832.2.1
Unique NamemRNA_C-tenellus_contig9832.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9832.2.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.370e-28
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 1 
Query:   16 VPVYVVKRMEGMATDLVENYALLKVLDRRVASGALSQLWLSLAGPGQGDNLFRTLSAVVHKGVVRATAME----GVEDVGPGMARGVARGTPRWVAPVDPLTGETDTRLCFLYAEMWREIMDP 372
            VP ++++R++ ++  LVENYALL   DR +A   L QLWL+L+GPGQGDNL R L  VV KGV  A  ME    G+++ G      V     +WVAPVDP+TG  D RLCFLYA++WR +++P
Sbjct:  539 VPGHLMRRLQSLSLRLVENYALLSSKDRGLACQGLCQLWLALSGPGQGDNLSRMLGVVVQKGVSLAGTMENPGGGIDEAGEPSDAPV-----KWVAPVDPVTGAVDARLCFLYADLWRRVVNP 656
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BLAST of mRNA_C-tenellus_contig9832.2.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.100e-24
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 1 
Query:   16 VPVYVVKRMEGMATDLVENYALLKVLDRRVASGALSQLWLSLAGPGQGDNLFRTLSAVVHKGVVRATAME----GVEDVGPGMARGVARGTP-RWVAPVDPLTGETDTRLCFLYAEMWREIMDP 372
            VP ++++R++ ++  LVENYALL   DR +A   L QLWL+ +GPGQGDNL R       KGV  A  ME    GV++ G          TP +WVAPVDP+TG  D RLCFLYA++WR +++P
Sbjct:  134 VPGHLMRRLQSLSLRLVENYALLGNKDRGLACQGLCQLWLAFSGPGQGDNLSRM------KGVSLAGTMENPGGGVDEAGE------PSDTPVKWVAPVDPVTGAVDARLCFLYADLWRRVVNP 245
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9832.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKP7_ECTSI1.370e-2849.59Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L056_9PHAE7.100e-2447.58NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9832contigC-tenellus_contig9832:4208..5630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKP7
PFAMsFAT,FATC,NUC194,PI3_PI4_kinase,SMG1
Model size428
Max annot lvl2759|Eukaryota
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.25e-29
EggNOG OGsCOG5032@1|root,KOG0891@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size426
COG categoryBDLTU
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.5570555-CDS-C-tenellus_contig9832:4207..43631680790203.5570555-CDS-C-tenellus_contig9832:4207..4363Choristocarpus tenellus KU2346CDSC-tenellus_contig9832 4208..4363 +
1680790203.568924-CDS-C-tenellus_contig9832:4898..51021680790203.568924-CDS-C-tenellus_contig9832:4898..5102Choristocarpus tenellus KU2346CDSC-tenellus_contig9832 4899..5102 +
1680790203.5778625-CDS-C-tenellus_contig9832:5564..56301680790203.5778625-CDS-C-tenellus_contig9832:5564..5630Choristocarpus tenellus KU2346CDSC-tenellus_contig9832 5565..5630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9832.2.1prot_C-tenellus_contig9832.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9832 4208..5630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9832.2.1

>prot_C-tenellus_contig9832.2.1 ID=prot_C-tenellus_contig9832.2.1|Name=mRNA_C-tenellus_contig9832.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=142bp
GGGQGVPVYVVKRMEGMATDLVENYALLKVLDRRVASGALSQLWLSLAGP
GQGDNLFRTLSAVVHKGVVRATAMEGVEDVGPGMARGVARGTPRWVAPVD
PLTGETDTRLCFLYAEMWREIMDPPEEENGHQQELFGNHHRY
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mRNA from alignment at C-tenellus_contig9832:4208..5630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9832.2.1 ID=mRNA_C-tenellus_contig9832.2.1|Name=mRNA_C-tenellus_contig9832.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1423bp|location=Sequence derived from alignment at C-tenellus_contig9832:4208..5630+ (Choristocarpus tenellus KU2346)
GGTGGTGGGCAGGGTGTTCCAGTGTACGTTGTAAAGAGGATGGAAGGTAT
GGCAACGGATTTGGTAGAGAATTATGCATTGCTCAAGGTATTGGACAGGA
GGGTGGCTTCTGGGGCACTGAGTCAGCTGTGGCTCTCGCTGGCAGGGCCA
GGGCAGGTCAGGAAAGAGAGAAGGGTGGGAAGTGGTATTTGTGGTGGGAA
TGGGGAAGCTGTTATGTTTGGATAGATGCTGTGCTGAGGTGGTTATTGTG
AATGGGTGATGGTTGCTGAGTGTGGTATTGGCTACTTGGCTTTGGTTGAT
AGTAATTTTTTGAGGATGATTGGGTTGTGGGAAATCATGGTGGTTATTTG
GATGGGGAAAGTGGTTTTGGTTATGAATTGTGATGGATTTCTAATGAGGT
TGAGGTTTCGTATGTATGATGGTTGGTGATTGATGGGGGAGGGTGGTTAA
ATGGAAGGTGGTTGAATGGAGAGTGATCATGTGAGGGTTGTGGAATGGGG
ACGATATTTCAACGTTGATGACTCATGTTGGCTGGAGGATGTCATATTGA
TCCGTAGAGGTGAAGGTTGCATTGCAGTATCAGGAAAAAGGAAGATATCC
TCTCATTACATATTGGCAAGAAATTTGGCTTAATGGAATTATCCGAAGAA
ATGCAATTGTCCTCTCCCCTGCTCGTGAACTGTGCACACAGGGGGATAAC
CTTTTCCGCACCTTGAGTGCTGTTGTCCATAAGGGGGTTGTACGAGCAAC
TGCCATGGAAGGTGTTGAAGATGTGGGGCCTGGAATGGCTAGAGGGGTAG
CCCGGGGGACACCTCGCTGGGTGGCACCTGTGGACCCTCTGACAGGAGAG
ACAGACACTCGACTGTGCTTCCTCTACGCAGAGATGTGGAGGGAGGTGTG
TTGTGTTTGACCCAATGGTGTTCCTTGTGTATGTTGCCTATGTTTTATGT
TTTGGTGGATATGTGGTGGTTTGGACTGTATATGTGGTTCTTTGAAGGAC
ATATCGCGTGCGTGCTGTTGCGTAGTTCAGTTAAGTTGAAGTATATACAG
AAAATGAATTAGTGAGTGTGGTTTTGGTTGGAGGTGTTTCTGCATCTTTG
TGAGTGAGCTTTTTGAAATCGGAGTTGTTTCAGTATTTTTTCCACTCTAG
GTTTCTCTCATAGAAGATCTTGGTAGTATTGTGGAGGTTCAATGAAATTA
GGCCTGGTGAGAGGGGATAGCATTCAAGCGTATGGTAAGGGCTAGGGCTA
GGGCGAGGCTTAAACTTACACCCTAAATCTCATCATTCTTATCTGTGTCC
CTGTTATTAGCACTATCTGTACATGTGCTCACATACTGTTTGGTTGGTTG
TCTTCAGATCATGGATCCGCCTGAGGAGGAGAACGGTCACCAGCAGGAGT
TGTTTGGGAACCATCATCGGTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9832:4208..5630+

>mRNA_C-tenellus_contig9832.2.1 ID=mRNA_C-tenellus_contig9832.2.1|Name=mRNA_C-tenellus_contig9832.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=426bp|location=Sequence derived from alignment at C-tenellus_contig9832:4208..5630+ (Choristocarpus tenellus KU2346)
GGTGGTGGGCAGGGTGTTCCAGTGTACGTTGTAAAGAGGATGGAAGGTAT
GGCAACGGATTTGGTAGAGAATTATGCATTGCTCAAGGTATTGGACAGGA
GGGTGGCTTCTGGGGCACTGAGTCAGCTGTGGCTCTCGCTGGCAGGGCCA
GGGCAGGGGGATAACCTTTTCCGCACCTTGAGTGCTGTTGTCCATAAGGG
GGTTGTACGAGCAACTGCCATGGAAGGTGTTGAAGATGTGGGGCCTGGAA
TGGCTAGAGGGGTAGCCCGGGGGACACCTCGCTGGGTGGCACCTGTGGAC
CCTCTGACAGGAGAGACAGACACTCGACTGTGCTTCCTCTACGCAGAGAT
GTGGAGGGAGATCATGGATCCGCCTGAGGAGGAGAACGGTCACCAGCAGG
AGTTGTTTGGGAACCATCATCGGTAC
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