mRNA_C-tenellus_contig983.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig983.1.1
Unique NamemRNA_C-tenellus_contig983.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A8K1MU90_9RICK (IS21 family transposase n=1 Tax=Candidatus Megaira endosymbiont of Mesostigma viride TaxID=2866314 RepID=A0A8K1MU90_9RICK)

HSP 1 Score: 172 bits (436), Expect = 1.200e-49
Identity = 79/121 (65.29%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    1 SMRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            S+ RY+    L    CIRF+TLPGEEAQVDFGDIG++YD +G  RK+YIFNMRLS+SR DYYEIVFDQKV TW++C+INAF++F GVP+ +KLDNLK+ I+   FYE  YQ +YKR ADHY
Sbjct:   60 SLTRYLRKIKLHNSICIRFNTLPGEEAQVDFGDIGRRYDPEGKLRKAYIFNMRLSYSRKDYYEIVFDQKVNTWIQCNINAFKYFQGVPKVIKLDNLKSAIIIANFYEPIYQEQYKRFADHY 180
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BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: UPI0018A87AA2 (IS21 family transposase n=2 Tax=Rickettsiales endosymbiont of Trichoplax sp. H2 TaxID=2021221 RepID=UPI0018A87AA2)

HSP 1 Score: 162 bits (410), Expect = 7.500e-48
Identity = 76/121 (62.81%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:    1 SMRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            ++  YI    +K  +CIR  T  GEEAQVDFGDIG+K+D  G  RK+YIFNMRLS+SR DY+EIVFDQK+ET + C+INAF  FGGVP+ +KLDNLKAG+ KV  YE  YQ+EYK +ADHY
Sbjct:   88 TLSHYIRRHKIKNNTCIRLQTEAGEEAQVDFGDIGRKHDKDGKLRKAYIFNMRLSYSRYDYWEIVFDQKIETCINCYINAFIDFGGVPKVIKLDNLKAGVTKVDIYEPMYQKEYKSMADHY 208
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BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A352Z6C9_9DELT (IS21 family transposase (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A352Z6C9_9DELT)

HSP 1 Score: 153 bits (386), Expect = 1.140e-43
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:   49 IRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            +R HTLPGEEAQVDFG +GK  D +G  RK+++FNMRLS+SR DYYE V++QKVET++ CHI+AFEFFGG+P+ VK+DNLKA IL+  FYE  YQR YK  AD+Y
Sbjct:  108 VRIHTLPGEEAQVDFGYVGKTKDNEGKLRKTWVFNMRLSYSRFDYYEKVYNQKVETFILCHIHAFEFFGGIPQIVKIDNLKAAILEANFYEPVYQRMYKDFADYY 212
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BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A349HR62_9FIRM (IS21 family transposase (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A349HR62_9FIRM)

HSP 1 Score: 150 bits (379), Expect = 1.420e-43
Identity = 70/121 (57.85%), Postives = 92/121 (76.03%), Query Frame = 1 
Query:    1 SMRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            +++RY+     K +  IR HT PG+EAQVDFG  G   +  G  +K+++FNMRLS+SRLDY+E V+DQKVET++ CHI+AFEFFGGVPEYVK+DNLKA IL+  FYE  YQ+ YK  A++Y
Sbjct:   56 TVKRYVNKIKRKEDIFIRVHTQPGQEAQVDFGYFGMSKNDSGKNKKTWVFNMRLSYSRLDYFEKVYDQKVETFIACHIHAFEFFGGVPEYVKIDNLKAAILEANFYEPVYQQLYKDFANYY 176
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BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A4Y8HZH2_9BACT (IS21 family transposase (Fragment) n=1 Tax=Candidatus Atribacteria bacterium MT.SAG.1 TaxID=2552984 RepID=A0A4Y8HZH2_9BACT)

HSP 1 Score: 149 bits (375), Expect = 1.280e-41
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:   49 IRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            IR HTLP EEAQVDFG +G     QG +RK+++FNMRLS+SRLDYYEIV+DQ+VET+++CHINAF +FGG+P Y+K+DNLKA ILK  FYE  YQ  YK  A HY
Sbjct:  108 IRMHTLPAEEAQVDFGYLGYTL-YQGKKRKTWVFNMRLSYSRLDYYEIVYDQRVETFIRCHINAFNYFGGIPRYIKIDNLKAAILKANFYEPIYQELYKNFAYHY 211
[Close]
BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A1V6IRF3_9DELT (Integrase core domain protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1V6IRF3_9DELT)

HSP 1 Score: 151 bits (382), Expect = 1.690e-41
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:   49 IRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            +R HTLPGEEAQVDFG +GK  D +G  RK+++FNMRLS+SR DYYE V++QKVET++ CHI AFE+FGG+P+ VK+DNLKA IL+  FYE  YQR YK  AD+Y
Sbjct:  108 VRIHTLPGEEAQVDFGYVGKTKDNEGKLRKTWVFNMRLSYSRFDYYEKVYNQKVETFILCHIRAFEYFGGIPQIVKIDNLKAAILEANFYEPVYQRMYKDFADYY 212
[Close]
BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A662DAH7_9BACT (IS21 family transposase n=2 Tax=Bacteria TaxID=2 RepID=A0A662DAH7_9BACT)

HSP 1 Score: 151 bits (381), Expect = 2.910e-41
Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:    1 SMRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            +++ YI     +    +R HTLPGEEAQVDFG +G   D +G +R++++FNMRLS+SRLDYYE V+DQ+VET+++CHI+AF++F GVPEYVK+DNLKA ILK  FYE  YQ+ YK  A HY
Sbjct:   92 TVKDYISKIRKRENIFVRVHTLPGEEAQVDFGYVGLTPDKKGKRRRTWVFNMRLSYSRLDYYEKVYDQRVETFIQCHIDAFKYFKGVPEYVKIDNLKAAILKANFYEPIYQKLYKDFAQHY 212
[Close]
BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A7G9Z384_9EURY (Integrase catalytic domain-containing protein n=1 Tax=Methanosarcinales archaeon ANME-1 ERB7 TaxID=2759913 RepID=A0A7G9Z384_9EURY)

HSP 1 Score: 150 bits (379), Expect = 4.710e-41
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1 
Query:    1 SMRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            +++ YI     +    IR HTLP EEAQVDFG +G     QG +RK+++FNMRLS+SRLDYYEIV+DQ+VET+++CHINAF +FGG+P+YVK+DNLKA ILK  FYE  YQ  YK  A HY
Sbjct:   87 TVKDYICKIKKRENIFIRMHTLPAEEAQVDFGYLGYTL-YQGKKRKTWVFNMRLSYSRLDYYEIVYDQRVETFIQCHINAFYYFGGIPQYVKIDNLKAAILKANFYEPIYQELYKNFAHHY 206
[Close]
BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A5C8BGL2_9NEIS (IS21 family transposase n=1 Tax=Neisseriales bacterium TaxID=2053582 RepID=A0A5C8BGL2_9NEIS)

HSP 1 Score: 149 bits (375), Expect = 1.900e-40
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1 
Query:    1 SMRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            +++RY+       +  IRFHT  GEEAQVDFG +G   D  G +RK++IFNMRLS+SR+DYYE V+DQKVET+++CHINAF+FF GVP  +K+DNLKA IL   FYE  YQ  YK+ AD+Y
Sbjct:   91 AVKRYVAEIKDSSDVHIRFHTNAGEEAQVDFGYVGLTPDVSGKRRKTWIFNMRLSYSRMDYYECVYDQKVETFIQCHINAFKFFNGVPSRIKIDNLKAAILDANFYEPVYQSLYKQFADYY 211
[Close]
BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Match: A0A353RZ80_9BACT (IS21 family transposase n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A353RZ80_9BACT)

HSP 1 Score: 148 bits (374), Expect = 2.780e-40
Identity = 66/121 (54.55%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:    1 SMRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFNMRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGILKVGFYESTYQREYKRLADHY 363
            +++ YI +   +   CIRFHT PG+E+QVDFG +G   D  G +RK+++FNMRLS+SRLDYYE V+DQ VET+++CH +AF++F G+P+YVK+DNLKA +L+  FYE+ YQ  YK+ AD Y
Sbjct:   91 TVKSYIASIRKRENICIRFHTDPGQESQVDFGYVGLTKDNSGKKRKTWVFNMRLSYSRLDYYEKVYDQTVETFIQCHEHAFKYFNGIPKYVKIDNLKAAVLEANFYETNYQCLYKQFADFY 211
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig983.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1MU90_9RICK1.200e-4965.29IS21 family transposase n=1 Tax=Candidatus Megaira... [more]
UPI0018A87AA27.500e-4862.81IS21 family transposase n=2 Tax=Rickettsiales endo... [more]
A0A352Z6C9_9DELT1.140e-4365.71IS21 family transposase (Fragment) n=1 Tax=Deltapr... [more]
A0A349HR62_9FIRM1.420e-4357.85IS21 family transposase (Fragment) n=1 Tax=Clostri... [more]
A0A4Y8HZH2_9BACT1.280e-4165.71IS21 family transposase (Fragment) n=1 Tax=Candida... [more]
A0A1V6IRF3_9DELT1.690e-4164.76Integrase core domain protein n=2 Tax=Bacteria Tax... [more]
A0A662DAH7_9BACT2.910e-4157.85IS21 family transposase n=2 Tax=Bacteria TaxID=2 R... [more]
A0A7G9Z384_9EURY4.710e-4159.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A5C8BGL2_9NEIS1.900e-4057.85IS21 family transposase n=1 Tax=Neisseriales bacte... [more]
A0A353RZ80_9BACT2.780e-4054.55IS21 family transposase n=1 Tax=Candidatus Omnitro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig983contigC-tenellus_contig983:7988..8350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog351627.Csac_0473
PFAMsrve
Model size363
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.87e-31
EggNOG OGsCOG4584@1|root,COG4584@2|Bacteria,1TR5X@1239|Firmicutes,249QR@186801|Clostridia,42JCI@68295|Thermoanaerobacterales
DescriptionPFAM Integrase catalytic region
Cds size360
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.366637-UTR-C-tenellus_contig983:7987..79901680790203.366637-UTR-C-tenellus_contig983:7987..7990Choristocarpus tenellus KU2346UTRC-tenellus_contig983 7988..7990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790203.379425-CDS-C-tenellus_contig983:7990..83501680790203.379425-CDS-C-tenellus_contig983:7990..8350Choristocarpus tenellus KU2346CDSC-tenellus_contig983 7991..8350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig983.1.1prot_C-tenellus_contig983.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig983 7991..8350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig983.1.1

>prot_C-tenellus_contig983.1.1 ID=prot_C-tenellus_contig983.1.1|Name=mRNA_C-tenellus_contig983.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MRRYIIAQNLKVESCIRFHTLPGEEAQVDFGDIGKKYDTQGNQRKSYIFN
MRLSHSRLDYYEIVFDQKVETWLKCHINAFEFFGGVPEYVKLDNLKAGIL
KVGFYESTYQREYKRLADHY
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mRNA from alignment at C-tenellus_contig983:7988..8350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig983.1.1 ID=mRNA_C-tenellus_contig983.1.1|Name=mRNA_C-tenellus_contig983.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=363bp|location=Sequence derived from alignment at C-tenellus_contig983:7988..8350+ (Choristocarpus tenellus KU2346)
AGTATGAGACGTTATATTATTGCCCAGAATTTGAAAGTGGAAAGTTGTAT
AAGATTTCATACATTACCAGGAGAAGAAGCACAGGTTGACTTTGGAGACA
TTGGTAAAAAATATGATACTCAAGGTAATCAAAGAAAGTCTTATATATTT
AACATGAGGCTATCTCATTCTAGATTAGATTATTATGAAATAGTTTTTGA
TCAGAAAGTAGAAACTTGGCTTAAATGCCATATAAATGCTTTTGAGTTTT
TTGGTGGAGTACCAGAATATGTAAAACTAGATAATCTGAAAGCAGGAATA
TTAAAAGTAGGATTTTATGAATCTACCTATCAAAGAGAATATAAGAGATT
AGCTGATCATTAT
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Coding sequence (CDS) from alignment at C-tenellus_contig983:7988..8350+

>mRNA_C-tenellus_contig983.1.1 ID=mRNA_C-tenellus_contig983.1.1|Name=mRNA_C-tenellus_contig983.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig983:7988..8350+ (Choristocarpus tenellus KU2346)
ATGAGACGTTATATTATTGCCCAGAATTTGAAAGTGGAAAGTTGTATAAG
ATTTCATACATTACCAGGAGAAGAAGCACAGGTTGACTTTGGAGACATTG
GTAAAAAATATGATACTCAAGGTAATCAAAGAAAGTCTTATATATTTAAC
ATGAGGCTATCTCATTCTAGATTAGATTATTATGAAATAGTTTTTGATCA
GAAAGTAGAAACTTGGCTTAAATGCCATATAAATGCTTTTGAGTTTTTTG
GTGGAGTACCAGAATATGTAAAACTAGATAATCTGAAAGCAGGAATATTA
AAAGTAGGATTTTATGAATCTACCTATCAAAGAGAATATAAGAGATTAGC
TGATCATTAT
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