mRNA_C-tenellus_contig9803.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9803.2.1
Unique NamemRNA_C-tenellus_contig9803.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9803.2.1 vs. uniprot
Match: D7FKA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.860e-34
Identity = 86/213 (40.38%), Postives = 126/213 (59.15%), Query Frame = 2 
Query:  212 DPSIPVG--GPRVDDLERVDGILRRLKQDKLLQDDIRHPQVRQALAHWTGEKRLPQEEADQLMDENFRIQAVFEKLVELQHACRHAGMSVPLANVLAGCGLSPQQLKRGGEVKPPASEQGTQIPLVTGSRGQRPGEGGLAGTAREVPGVSAAAIRIETPRAGGEKEAYPQVPRP-WQTLLMTEAGKAVAVGICALVFTMILKAIRGDDPLGFG 841
            + ++P G  G R + L+RVDG+LR L +DKLLQDD+R+  V++AL HWTG+ R+ Q+ AD+LM++N+RIQ+V  ++ ELQ  C+ A + +PL++VLAG GL    L + G+    A+       +    R     +G  +G  R   G +A  +   T  AG E     +   P W+  L  EA +   V +CALVFT++LK  RGDDPLG G
Sbjct:    8 EAAMPAGATGSRQEALDRVDGMLRALARDKLLQDDLRNTDVKRALEHWTGQNRMSQDHADELMEDNYRIQSVCSRMAELQSLCKQASIGLPLSHVLAGKGLY-DNLDQPGQASAAATSGSGGNAVDQTGRPTSTSDGSSSGLQRRK-GATAKGLHDAT--AGAEVGTGKEEDEPSWRRALAEEALRLTFVCLCALVFTLLLKHYRGDDPLGKG 216
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BLAST of mRNA_C-tenellus_contig9803.2.1 vs. uniprot
Match: W7TBK6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.240e-15
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 2 
Query:  251 LERVDGILRRLKQDKLLQDDIRHPQVRQALAHWTGEKRLPQEEADQLMDENFRIQAVFEKLVELQHACRHAGMSVPLANVLAGCGLSPQQLKRGGEVKPPASEQGTQIPLVTGSRGQRPGEG 616
            +E V+G+L +L  D   QDD+R PQVR AL HWT E RLP  +A++LM +++R+ AV +KL  LQ AC+ AGM+VPL  VL   G S   L+  G     ++     +P      G++PG+G
Sbjct:    1 MEAVNGLLAKLASDSDFQDDLRQPQVRVALKHWTNENRLPPLQAEKLM-KDYRVLAVLQKLKSLQTACQRAGMAVPLDAVLRQEG-SLGSLRSTGARSLTSTSYSASVP-----EGEQPGKG 115
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BLAST of mRNA_C-tenellus_contig9803.2.1 vs. uniprot
Match: A0A7S2HX62_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2HX62_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 1.450e-7
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  251 LERVDGILRRLKQDKLLQDDIRHPQVRQALAHWTGEKRLPQEEADQLMDEN---FR--IQAVFEKLVELQHACRHAGM 469
            ++ VD +L +L  D  L + +  P V++AL HWT E+RL  +EA++L DE+   FR  I+ V +++  LQHAC+ AG+
Sbjct:   16 MDTVDAVLSQLADDDRLHESLGRPSVQKALKHWTNERRLSPDEAEELFDEDDTEFRLYIRPVLDRMRPLQHACKVAGL 93
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BLAST of mRNA_C-tenellus_contig9803.2.1 vs. uniprot
Match: A0A7S2HPS9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2HPS9_9DINO)

HSP 1 Score: 56.2 bits (134), Expect = 9.050e-6
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 2 
Query:  239 RVDDLERVDGILRRLKQDKLLQDDIRHPQVRQALAHWTGEKRLPQEEADQLMDENFRIQAVFEKLVELQHACRHAGMSVPLANVLA 496
            R + L  V   L  LK +    + +   + R+AL HW+GE RLP  E +   + N R+  +   L +LQHAC+ AG+ VPL +VLA
Sbjct:    7 REEALRAVSLALGLLKTNDSFHEAVDCDEARRALRHWSGEARLPPSETED-WEHNPRLMVILRHLRQLQHACKLAGIKVPLHSVLA 91
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9803.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKA4_ECTSI2.860e-3440.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TBK6_9STRA7.240e-1542.62Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2HX62_9DINO1.450e-741.03Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S2HPS9_9DINO9.050e-638.37Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9803contigC-tenellus_contig9803:2227..4074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1387
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003360.1
Cds size501
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.4472382-UTR-C-tenellus_contig9803:2226..27211680790202.4472382-UTR-C-tenellus_contig9803:2226..2721Choristocarpus tenellus KU2346UTRC-tenellus_contig9803 2227..2721 -
1680790202.4846702-UTR-C-tenellus_contig9803:3572..36681680790202.4846702-UTR-C-tenellus_contig9803:3572..3668Choristocarpus tenellus KU2346UTRC-tenellus_contig9803 3573..3668 -
1680790202.4945114-UTR-C-tenellus_contig9803:3779..40741680790202.4945114-UTR-C-tenellus_contig9803:3779..4074Choristocarpus tenellus KU2346UTRC-tenellus_contig9803 3780..4074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.456848-CDS-C-tenellus_contig9803:2721..32051680790202.456848-CDS-C-tenellus_contig9803:2721..3205Choristocarpus tenellus KU2346CDSC-tenellus_contig9803 2722..3205 -
1680790202.4714792-CDS-C-tenellus_contig9803:3555..35721680790202.4714792-CDS-C-tenellus_contig9803:3555..3572Choristocarpus tenellus KU2346CDSC-tenellus_contig9803 3556..3572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9803.2.1prot_C-tenellus_contig9803.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9803 2722..3572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9803.2.1

>prot_C-tenellus_contig9803.2.1 ID=prot_C-tenellus_contig9803.2.1|Name=mRNA_C-tenellus_contig9803.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=167bp
MDENFRIQAVFEKLVELQHACRHAGMSVPLANVLAGCGLSPQQLKRGGEV
KPPASEQGTQIPLVTGSRGQRPGEGGLAGTAREVPGVSAAAIRIETPRAG
GEKEAYPQVPRPWQTLLMTEAGKAVAVGICALVFTMILKAIRGDDPLGFG
NSNGNGVGTQGVQEDL*
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mRNA from alignment at C-tenellus_contig9803:2227..4074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9803.2.1 ID=mRNA_C-tenellus_contig9803.2.1|Name=mRNA_C-tenellus_contig9803.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1848bp|location=Sequence derived from alignment at C-tenellus_contig9803:2227..4074- (Choristocarpus tenellus KU2346)
TATTGATTCTGGCTGGGAGCCACTGCAACCTCTACGTTCTCCGAATCCCG
TGGATGTCTTGGTCGGACGGGCGCTCAGGCATTGGTACTCTCTTAGCTGA
AGTTGGTAGTTTTTTATACATCGGAACAGAGTTTGATACAACACCCCATG
GGTAGCAGTGTAGTGCTGAACCAACCTCACTCTCTGCGCGGCCGATGGAT
ATCTCACTACAGATCCAAGCATTCCTGTTGGTGGACCACGTGTTGATGAC
CTGGAGAGAGTTGACGGCATTCTACGAAGGCTTAAACAGGACAAGGTACG
CTGTGACCACAAGGCTGTTTTTCATTGAAGGACGAGCTGAAAGATCAGCT
TCCTGTTTACTCTTGCTCTCCATATCGCCCCGAACAAACAATTTTACCTG
TTTCAGCTCCTTCAAGATGACATCCGTCACCCTCAAGTTCGACAAGCACT
GGCACACTGGACGGGCGAGAAGCGATTACCTCAGGAAGAAGCGGATCAGC
TGATGGATGAAAACTTCAGGTTTGAGCGAAATCTTATTGTGCCTTGCGAA
CCCAGCAGTGAAACCACAGGAAAAACTTAGAGGAAGCTGCAGCAAATGCT
GGGAGGGTAGCGGGACTGATAATTTAAATAAACCCTTGTAAATTTTCAGT
ATATTGGCAGTTTCCTCCCCTGATCTCCATCTATACCTGTGCATGATATC
CATCGACGATAGCTCGAACTAGTGATGTTTGAAAAATCAATGGAAGGAGA
ATCACTATTTTGCGTATTTCCTAGGGGAAGAGCGATATGTAGTGACTCCT
CGCCCCTAAAGTGAGATACTGTAGGCTTCATGCACACCCCACCCCCTCTG
TCCTCGTCTGACCAAAAAGGATCCAAGCTGTGTTCGAGAAACTGGTAGAA
CTTCAGCATGCCTGTCGTCATGCTGGCATGAGTGTGCCGCTGGCCAACGT
GCTTGCAGGCTGCGGCCTGTCCCCGCAGCAGCTCAAAAGGGGGGGAGAGG
TCAAACCCCCAGCATCAGAACAAGGCACTCAAATCCCACTAGTGACAGGA
AGTAGAGGGCAACGACCAGGGGAAGGGGGGTTGGCAGGAACAGCAAGGGA
AGTACCTGGGGTGTCAGCAGCTGCAATTAGAATTGAGACTCCAAGAGCTG
GAGGGGAGAAGGAGGCATACCCCCAAGTACCACGGCCCTGGCAAACATTA
TTGATGACTGAGGCTGGCAAGGCAGTAGCAGTGGGAATTTGTGCGTTGGT
CTTTACCATGATACTCAAGGCCATCCGTGGAGATGACCCTCTGGGGTTTG
GGAACAGCAATGGAAATGGAGTAGGGACACAAGGGGTGCAGGAAGACTTA
TGAGCTCAAAAAGAAAATGTCGTGTAGATATTGACAGGCTTTTTCTTCCA
CAGGCAGTAAAAGGGTCTCTAAATTGCAGATTGGGGAGAATGGATCCGAG
GGTCCTAGTGATACTGGTTTGGCTTTTTCCTTGACACAACATGCTCATAA
TGCCAGAGGGCATGATGATAAATGAACAAAGTATAGAGGTAAGATGTAAC
TACAATCCTTCAAACGTTAAACAACATACTACTCTTATATCACTATGTAA
GTCAATAATTGGGTACATGTGTCGTAAGGAGCATATCCATGATTTTGTGT
GGTATGTTAAGGGTGTAACATAGTGTTTGGTATGTTTTGGTTGGCGTGTT
ACAGTCACGAGGTAATAGTACTACAAAATAAGTTTTTGTGTTTTGTGTTA
CAGGCATAACATAGTGTTGTTCTTTTAACCTAACATATATCGTATCATAA
AATGTAGTGTCTCAACGCTGTGTGTTAATGTTCAATGAAATATCGTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9803:2227..4074-

>mRNA_C-tenellus_contig9803.2.1 ID=mRNA_C-tenellus_contig9803.2.1|Name=mRNA_C-tenellus_contig9803.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=501bp|location=Sequence derived from alignment at C-tenellus_contig9803:2227..4074- (Choristocarpus tenellus KU2346)
ATGGATGAAAACTTCAGGATCCAAGCTGTGTTCGAGAAACTGGTAGAACT
TCAGCATGCCTGTCGTCATGCTGGCATGAGTGTGCCGCTGGCCAACGTGC
TTGCAGGCTGCGGCCTGTCCCCGCAGCAGCTCAAAAGGGGGGGAGAGGTC
AAACCCCCAGCATCAGAACAAGGCACTCAAATCCCACTAGTGACAGGAAG
TAGAGGGCAACGACCAGGGGAAGGGGGGTTGGCAGGAACAGCAAGGGAAG
TACCTGGGGTGTCAGCAGCTGCAATTAGAATTGAGACTCCAAGAGCTGGA
GGGGAGAAGGAGGCATACCCCCAAGTACCACGGCCCTGGCAAACATTATT
GATGACTGAGGCTGGCAAGGCAGTAGCAGTGGGAATTTGTGCGTTGGTCT
TTACCATGATACTCAAGGCCATCCGTGGAGATGACCCTCTGGGGTTTGGG
AACAGCAATGGAAATGGAGTAGGGACACAAGGGGTGCAGGAAGACTTATG
A
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