mRNA_C-tenellus_contig9802.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9802.2.1
Unique NamemRNA_C-tenellus_contig9802.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9802.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9802contigC-tenellus_contig9802:1327..5029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size681
Hectar predicted targeting categoryother localisation
Exons3
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.2619238-UTR-C-tenellus_contig9802:1326..13751680790202.2619238-UTR-C-tenellus_contig9802:1326..1375Choristocarpus tenellus KU2346UTRC-tenellus_contig9802 1327..1375 -
1680790202.3037236-UTR-C-tenellus_contig9802:5009..50291680790202.3037236-UTR-C-tenellus_contig9802:5009..5029Choristocarpus tenellus KU2346UTRC-tenellus_contig9802 5010..5029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790202.2721968-CDS-C-tenellus_contig9802:1375..17711680790202.2721968-CDS-C-tenellus_contig9802:1375..1771Choristocarpus tenellus KU2346CDSC-tenellus_contig9802 1376..1771 -
1680790202.2827387-CDS-C-tenellus_contig9802:3607..37661680790202.2827387-CDS-C-tenellus_contig9802:3607..3766Choristocarpus tenellus KU2346CDSC-tenellus_contig9802 3608..3766 -
1680790202.2944746-CDS-C-tenellus_contig9802:4952..50091680790202.2944746-CDS-C-tenellus_contig9802:4952..5009Choristocarpus tenellus KU2346CDSC-tenellus_contig9802 4953..5009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9802.2.1prot_C-tenellus_contig9802.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9802 1376..5009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9802.2.1

>prot_C-tenellus_contig9802.2.1 ID=prot_C-tenellus_contig9802.2.1|Name=mRNA_C-tenellus_contig9802.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=204bp
MVERDFCTLDMDRRGSHLEAMMLEDNFFDKARKMILKAFGVGPAGLREGS
TSSGAGGGPATAAEIEAKQKIKVKMPKRPKKKAMESSVHGGLWLDGDLDS
VTDLPNSSSTSEDVTDLSAHTAVAVDAADAADAAPAPALASTPTSERKAE
VEVKVMEDEVGWLIWRFVLLCCAWKGGISYFVLCFYSGRRGTRGWAGLGW
RWH*
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mRNA from alignment at C-tenellus_contig9802:1327..5029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9802.2.1 ID=mRNA_C-tenellus_contig9802.2.1|Name=mRNA_C-tenellus_contig9802.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3703bp|location=Sequence derived from alignment at C-tenellus_contig9802:1327..5029- (Choristocarpus tenellus KU2346)
GAGGGGAGGCGGGGCAGGTGATGGTGGAGAGGGACTTCTGTACCCTTGAT
ATGGACCGACGTGGAAGTCACTTGGAGGTAGGTACACTCTAGAAGGGTGT
ATGTGTTGTGTCTTCCTGTTTTGACTTTTAGTTTGATGTGTGCTTTGGAG
GTATACCCTTGTGAGTCTTTGTTGATTGAGGTTTGTTGTGTTTTGTGTTT
TGTTTTGTTTCTTGTGAGGTGATTTTTTTGGTGTTTGTGGTTGGTGAGTT
GGATTGTGAGGAAGGCGTGTCTCTAGTTATTTTTGGGCTGTCTGTGAACT
GTGTTTGTTTGTGTGAATGAGCGTGTTTGATTTTTCTGGGCATGTTGTTG
GAAGGCGTTTTTTTTTTTTTTTTTGTCAGGTGAGGCGCACGCATGTGTGT
AATATGGACTATTGTTAGTATTGATTCGCAGGCAGTTGTGCGTTTACTGG
GTGTACAGTACCTGAAGCAGTCGAGAATTGCTGGATAAAATCTGGGAACA
CCTACATGCATCTGCTTATTTTTTTCTTCTTTTTCTTCCTGGTGTGGTCC
CCCCCCCCCTACATTGATTGTATCCCACAGGATAATACTGTAGGAGCGAT
GAAGTAGTTACTGCTGTGGATTTGTAGTTAAAGGAGGCGATTGTGTAGGT
AAGTTTTGTTGTCTATTCATTGTAGGTAGGGTATTTTGTCAGTTGAGTGG
GTCCGGTTTGTCTTTTTTTAATTTTTTTGTTTTGACTTGTGTTTTTTTTC
ACATTTTTTGTTTTTTTATATTATAAAAAAATATGATGACTCAAGAGAGA
TGTTGTGTGATGTGTATGGTTTTGTTCTTTTGAGGTCTTACTAGTGTGCT
GACCTTCTTACGAGTTTTTTTTGTTTATCTAAATTTATGGCTCTGAGTTT
TGTGACCTTTGACATTTTTTCGCATGAAAAAAAACATGTATCTGCGTGTA
TGGTGTGTCAAATGTGGTGATGGTGTTCAAGTTTGGTTGATACTATTATT
TATGTTTTTTTTTTTTTTTTTTTTTTTACTTAAAAAAAAAAAATCCATGT
GTGGGTTTTTGTGTGTTCGTCTCTCCTCTGTGGTGTANNNNNNNNNNTTA
AAAAAAATTTGTATCTGCGTGTATGGTGTGTCAAATGTGGTGATGGTGTT
TAAGTTTGGTTGATACTATTATTTATGTTTTTTTTTACTGACTTGGTTCA
CTTAAAAAAAAAAAATCCATGTGTGGGTGTATGTGTGTACGTATCACCTC
TGTGTTGAAACAGGCGATGATGCTTGAGGATAATTTTTTTGACAAGGCTC
GCAAAATGATTCTGAAGGCATTTGGAGTTGGGCCTGCTGGTCTGCGCGAG
GGTTCAACCAGCTCTGGGGCAGGGGGGGGGCCAGCAACTGCTGCAGAGAT
TGAGGCAAAGCAGAAGATAAAGGTGTGTGTGTGTGTGTATGTATCTATAT
ATCTATGTATTATGTGTGTCTTTCTGTATGTATATGTGTGTATGTTTGTA
TGTATATATGTATTGTGTGTGTGTGTATGTATCCAGGTGTTTTATAGAGG
GTTAGGGTTTGATCGTCAGGGTGGTATGTCTAAGAGAAAACTGTTGGTGG
TATGTCTAAGAGAAAACTGTTGGTGGTGTGTCTAAGAGAAAACTGTTGGT
GGTGTGTGTGGAGTTGCTTGCACCTTTCTGGGGGTAAGTGAGTGCATGGT
ATAACACTGCTCCGCTGCTGAGCGTTGATTTTTCTGAGGTAATTTGAGAA
ATTTCTGGATGAGTCAGTTTCCTGCTGGGCTACTTGCTTGAATTTTTAAT
GCTAATCCGTTCTCTTTTTTTGTCCATCCTGATTTAATTTTTTTATTATT
ATTATGTCTGACTGGATTTGCTCCTGGTTAGTATGTATATACATACCCCC
CTTTGTGTGTGTTATCAGTAATGTTATTGTCTTGTTTGGTACGGAGGAGA
AGAGTGTGTGTGTGACGTGTGCATGCTTCTTTTTCTTTTCTGAAGATGCA
CATATATATATATATTTTGAAATTGTACTAGGTTTTATGAAGTGTATATA
TATATATATTTATTTATTTTTTGCTCCAATTTTTAAGAAATAAAAGTAAG
GATTGTTTTACTGTTGATATACATTCTTGACTTTATTGTTTCTTTTATAA
AATGTTGTGTATGATGTGCTTTGCGGCCTTGAATATTTTGGTTCTATGTG
CATGGTCCCTCTGCTCACACTCCAGTTTGCAGTAACCAGTCCTGCAGCTG
ACAAAAGATGACAATCACCCCAGATGTCCATCAAGTCATACATTTGTTTG
CCCGCATTGTTTCCCTGCCCTATTTCTCAATCTCTATCCTCGATCTTGAG
TTAGTTTGTAAAAGAATATACATATTCCCATCTATGAATTCATGACATGT
AGTTACGATCATTCCAGCATTCCCAAGCTAGGGTTAGGGTATCACATGCA
GTGCTGTTTCTGGGAGGTTAGGGTTAGGGGGGATGATTTTTTTTACCAGA
ACGAACTAGGTGCCGGTACTCTCTAGAATAGTATGATGTAATAGAGGCAA
GAAATTAAACAATGCAATGTATCTCACCTACTCTGTATGGATTTACGCTA
ACATCCTATCTCTGTTCAAATAATTCTAAACCAAACTATCAAGAGGATAG
CTATAAAGTTGTTTTGTAACACGGTTGCCATATTCTACAGTTATAATCTT
CTACGGTTACCATGTTATGATTTAAACTGTTACGCATTTTACGTGTTATA
CTGTTAACCTGTTACACATTTAACTTGTTATACAGTTAACCTGTTAATAC
AGTTAACCTGTTACACAGTTAACCTGTTACACATTCAACCTAGTATACAG
TTAACCTGTTACGCATTTAACCCGTTATACAGTTAACCTGTTACACATTT
AACCTGTTACACATTCAACCTAGTATACAGTTAACCTGTTACACATTTAA
TCTGTTATACAGTTAACCTGTTACACATTCAACCTATTATACAGTTAACC
TGTTACATATTCAACCTAGTTAGTATACAGTTAACCTGTTATGCATTTAA
CATGTTACATATTCAACCTAGTATACAGTTAACCTGTTATACATTTAACC
TGTTACACATTTAACCTGTTGACCACATTTTGACTACATTTAACCTGTTA
CACATTTAACCTGTTGACCGAAGGGAGAGAGTTGGTTGATGGTGACTTCT
TGTTGCTGTTGGTATGTTAAAAAAAAAAGTTTTTTGTACATGCGATGGAA
TTGGATAGGTGAAGATGCCAAAGCGCCCAAAGAAGAAGGCAATGGAAAGC
AGCGTTCATGGTGGGCTCTGGTTGGACGGTGACCTGGACAGTGTCACTGA
TCTACCCAATAGTAGCAGTACATCGGAAGATGTCACTGACCTTAGTGCGC
ACACTGCTGTGGCCGTTGATGCTGCGGATGCTGCTGATGCTGCCCCTGCC
CCTGCCCTTGCCTCTACCCCTACATCTGAGCGAAAGGCGGAAGTGGAAGT
TAAGGTTATGGAAGACGAGGTAGGCTGGCTCATATGGCGTTTTGTTTTAC
TTTGTTGTGCCTGGAAAGGAGGGATTTCTTATTTTGTTTTATGCTTTTAT
TCGGGGAGGAGGGGAACGAGGGGCTGGGCTGGGCTGGGCTGGAGGTGGCA
TTGAATGAATTGAAGTAGGTTGGCTATTGCTTGAATTTTTAACTTTAGGA
TTT
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Coding sequence (CDS) from alignment at C-tenellus_contig9802:1327..5029-

>mRNA_C-tenellus_contig9802.2.1 ID=mRNA_C-tenellus_contig9802.2.1|Name=mRNA_C-tenellus_contig9802.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=612bp|location=Sequence derived from alignment at C-tenellus_contig9802:1327..5029- (Choristocarpus tenellus KU2346)
ATGGTGGAGAGGGACTTCTGTACCCTTGATATGGACCGACGTGGAAGTCA
CTTGGAGGCGATGATGCTTGAGGATAATTTTTTTGACAAGGCTCGCAAAA
TGATTCTGAAGGCATTTGGAGTTGGGCCTGCTGGTCTGCGCGAGGGTTCA
ACCAGCTCTGGGGCAGGGGGGGGGCCAGCAACTGCTGCAGAGATTGAGGC
AAAGCAGAAGATAAAGGTGAAGATGCCAAAGCGCCCAAAGAAGAAGGCAA
TGGAAAGCAGCGTTCATGGTGGGCTCTGGTTGGACGGTGACCTGGACAGT
GTCACTGATCTACCCAATAGTAGCAGTACATCGGAAGATGTCACTGACCT
TAGTGCGCACACTGCTGTGGCCGTTGATGCTGCGGATGCTGCTGATGCTG
CCCCTGCCCCTGCCCTTGCCTCTACCCCTACATCTGAGCGAAAGGCGGAA
GTGGAAGTTAAGGTTATGGAAGACGAGGTAGGCTGGCTCATATGGCGTTT
TGTTTTACTTTGTTGTGCCTGGAAAGGAGGGATTTCTTATTTTGTTTTAT
GCTTTTATTCGGGGAGGAGGGGAACGAGGGGCTGGGCTGGGCTGGGCTGG
AGGTGGCATTGA
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