mRNA_C-tenellus_contig9796.2.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9796.2.3
Unique NamemRNA_C-tenellus_contig9796.2.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9796.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9796contigC-tenellus_contig9796:2751..5194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1747
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_004850.1
Cds size798
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9796.2.3prot_C-tenellus_contig9796.2.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9796 3917..5114 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.7041814-UTR-C-tenellus_contig9796:2750..27901680790201.7041814-UTR-C-tenellus_contig9796:2750..2790Choristocarpus tenellus KU2346UTRC-tenellus_contig9796 2751..2790 -
1680790201.7215252-UTR-C-tenellus_contig9796:3087..39161680790201.7215252-UTR-C-tenellus_contig9796:3087..3916Choristocarpus tenellus KU2346UTRC-tenellus_contig9796 3088..3916 -
1680790201.7799692-UTR-C-tenellus_contig9796:5114..51941680790201.7799692-UTR-C-tenellus_contig9796:5114..5194Choristocarpus tenellus KU2346UTRC-tenellus_contig9796 5115..5194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.731615-CDS-C-tenellus_contig9796:3916..40541680790201.731615-CDS-C-tenellus_contig9796:3916..4054Choristocarpus tenellus KU2346CDSC-tenellus_contig9796 3917..4054 -
1680790201.7453241-CDS-C-tenellus_contig9796:4147..42641680790201.7453241-CDS-C-tenellus_contig9796:4147..4264Choristocarpus tenellus KU2346CDSC-tenellus_contig9796 4148..4264 -
1680790201.7571073-CDS-C-tenellus_contig9796:4425..45891680790201.7571073-CDS-C-tenellus_contig9796:4425..4589Choristocarpus tenellus KU2346CDSC-tenellus_contig9796 4426..4589 -
1680790201.7707057-CDS-C-tenellus_contig9796:4735..51141680790201.7707057-CDS-C-tenellus_contig9796:4735..5114Choristocarpus tenellus KU2346CDSC-tenellus_contig9796 4736..5114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9796.2.3

>prot_C-tenellus_contig9796.2.3 ID=prot_C-tenellus_contig9796.2.3|Name=mRNA_C-tenellus_contig9796.2.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=266bp
MKDTETTDDYLRDRVQQQWNVFDSCSLDLEASSKVFVRALDILASTKVAF
AAPENEAEADVDITEVSPVQQLVRSLPRGDVNASDNIRGAYFRAEESLAL
AHEQLSRNRETLARMAGVVEEATRIIGRYYLSPRGTAFEGGGEGGYEALD
RGKYGCGMSPVEMTRVMGTVLSRNQSEYELQETIMNSVGYDTPDQVLTTY
STSIATQPFLDARFIKQVKEIWLKKSNLLILSRGGQTQQSAILNATELWD
MPRVAVMPCSKQQVL*
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mRNA from alignment at C-tenellus_contig9796:2751..5194-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9796.2.3 ID=mRNA_C-tenellus_contig9796.2.3|Name=mRNA_C-tenellus_contig9796.2.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2444bp|location=Sequence derived from alignment at C-tenellus_contig9796:2751..5194- (Choristocarpus tenellus KU2346)
ACTCACTGCTGCTACCACACCACTGGTTCAATTAATTTCAAACTGATGTA
GAACTGAGACTAGACCTCTAACGCATCGAGATGAAGGACACGGAAACCAC
AGATGATTATCTCCGGGATCGAGTTCAGCAACAGTGGAACGTCTTCGATT
CGTGTTCCTTAGACCTTGAAGCTAGCAGTAAGGTGTTTGTACGTGCCCTG
GATATCCTGGCCTCTACAAAAGTTGCCTTTGCAGCGCCTGAGAACGAAGC
CGAGGCCGACGTGGACATTACCGAAGTCTCACCTGTCCAGCAGTTGGTGA
GATCTTTGCCCCGAGGTGATGTAAACGCTAGTGATAACATACGAGGGGCC
TACTTTCGTGCTGAGGAGAGTCTGGCACTGGCTCACGAACAACTGAGTCG
TAATAGGGAGACACTGGCGAGGATGGCGGGAGTTGTTGAAGAAGCTACGC
GAATCATAGGTGTGGCCTACCATAATATTTATAGATAAAGCACTCCCTGT
AATTGAAGGTGTAGTGTGGTCGACGCCGTTCTCTCTTCCTTGGAAGGATG
AGTTGGTCCCATTGCCTTAGAGTCCTCATACATTTGCGTCACCCACTTCC
CTCAGGGAGGTACTACTTATCACCTAGAGGGACAGCATTTGAGGGGGGGG
GCGAGGGTGGATATGAAGCCTTGGACCGAGGGAAATATGGCTGTGGAATG
TCTCCTGTCGAGATGACGAGGGTAATGGGTACTGTCCTGAGCAGGAATCA
GAGCGAGTATGAATTGCAGGTGGGGGCTAGGTTGTAGCACGTGTTCGCTA
GGTTAATCGTGCTCTTGCAAGCTCATGCATTCCGCATTGAAGGAGTTATT
CGTACGAAATCCTTGACCCGTGAGATTCGGGGTAACCCGTTCTTGATTGT
ACCTTTCTGGAACATCTCTATCTATGGCAGGAGACAATAATGAACTCGGT
GGGGTATGATACCCCTGACCAAGTGCTGACCACATATAGCACCAGCATAG
CAACACAGCCATTCTTGGATGCGCGGTTCATCAAACAGGTCAAAGAGGTG
AGGAACGAGGTTGAGATCTGCTGAAAAGCTTGAGGGTGATCTTTTTTAAT
GTGGAAGAAACCTTATCATTTACTGTCCTGTTCTTAACAGATTTGGTTGA
AGAAAAGTAATCTTTTGATCCTGTCAAGAGGTGGCCAAACACAACAATCA
GCCATACTCAATGCGACAGAGCTATGGGACATGCCAAGAGTTGCAGTGAT
GCCTTGTAGTAAGCAACAGGTTCTGTAGTTTGGTCAACCGACTGGCTGAC
TGGCTTTGCAGCTCTGATGCCATACCTAGACACAAGCAAGCAATGAAGGA
CACTGATTTGCAGGAGCTTTTATCAAAGCTATGCAGACTTTGAACGCACT
CAGTCAATCCTCAGTCTCTGCCTTGCACACATCACCTCCATCGCTCTCCT
ATTAGATACGGGCTCTCAATGACGATCTCCAAGGGTCCTCAAGGGGAGAG
GTGGCATAACGAGAAGGCCTATCTCTAATTAGGAGACTCAGAGGGATTAT
GTGAGAGGTAGGGTTGCCCACATAGACTGTTTCCCACAGACTGGCATCAC
TTGTGCCTTTGTTATGGGCTCTGTATTGTTTGTTTGCATACATGAACCTG
CATGTGGATAGTTTTACTCATCCTTAAAAGAGTGAAATAGTGTAAGTATA
GAATAATCCCAATAGGACCTCACTAACTTTAAGAGTAATTGATAGCAACT
GCCATAATCCTAATAAAGTACATTTAATGTTGAAGGAACACCACTCTCAA
ACAGGTTCTTACATAAGATATTTCAAAACAGTGTAGAATCGCTACCCATC
AGATTTGATCTTTAATCATCAGAACAGAGATTATTTTGTCCAACTGATAC
GATACTTGTTCCCAACCTCGCCGAATATTGCACAACAGTGTACACAGCAA
GAAGTACAAAAGGTGTGCCCACATAGCCTTAACTTCAGACAATAATAATA
ATAATTTGCCATCCGGCATTCTTGAAAACTAAAGCTTCAGCTAAAGCACG
ACTACTTGTACAACCTGGCAAGGCTGTCCCCGCACAATCTTCTGTTCAGG
TCTCCAGGTGGTTTAATTTTCCTCTTGTCTTTGGGTGGTTTGCATCACTG
AACACAAGGCACTCACCTGACTTGTGTGAAAGAAGGATAAATGACACTTT
ATAGTTGTTACTATTTTACTTTGCCAGAATCATATACTTACAATTTCTAC
ATCACTCTCTACCTCAATCCCCACTAATCATACCACAAGAGATTCCCACC
TGATCGTAGGAAGACCTTGCATCAATTAGGGTCCTATTTAACAATGCATC
ACTTGGTCTGTCCTTACGCATCCCCACTTTTTCATAATACAAACATCATT
TCAGGTAGATACCAAGCATTTCAACACCGTCAATCAAATGTGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9796:2751..5194-

>mRNA_C-tenellus_contig9796.2.3 ID=mRNA_C-tenellus_contig9796.2.3|Name=mRNA_C-tenellus_contig9796.2.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=798bp|location=Sequence derived from alignment at C-tenellus_contig9796:2751..5194- (Choristocarpus tenellus KU2346)
ATGAAGGACACGGAAACCACAGATGATTATCTCCGGGATCGAGTTCAGCA
ACAGTGGAACGTCTTCGATTCGTGTTCCTTAGACCTTGAAGCTAGCAGTA
AGGTGTTTGTACGTGCCCTGGATATCCTGGCCTCTACAAAAGTTGCCTTT
GCAGCGCCTGAGAACGAAGCCGAGGCCGACGTGGACATTACCGAAGTCTC
ACCTGTCCAGCAGTTGGTGAGATCTTTGCCCCGAGGTGATGTAAACGCTA
GTGATAACATACGAGGGGCCTACTTTCGTGCTGAGGAGAGTCTGGCACTG
GCTCACGAACAACTGAGTCGTAATAGGGAGACACTGGCGAGGATGGCGGG
AGTTGTTGAAGAAGCTACGCGAATCATAGGGAGGTACTACTTATCACCTA
GAGGGACAGCATTTGAGGGGGGGGGCGAGGGTGGATATGAAGCCTTGGAC
CGAGGGAAATATGGCTGTGGAATGTCTCCTGTCGAGATGACGAGGGTAAT
GGGTACTGTCCTGAGCAGGAATCAGAGCGAGTATGAATTGCAGGAGACAA
TAATGAACTCGGTGGGGTATGATACCCCTGACCAAGTGCTGACCACATAT
AGCACCAGCATAGCAACACAGCCATTCTTGGATGCGCGGTTCATCAAACA
GGTCAAAGAGATTTGGTTGAAGAAAAGTAATCTTTTGATCCTGTCAAGAG
GTGGCCAAACACAACAATCAGCCATACTCAATGCGACAGAGCTATGGGAC
ATGCCAAGAGTTGCAGTGATGCCTTGTAGTAAGCAACAGGTTCTGTAG
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