mRNA_C-tenellus_contig9779.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9779.4.1
Unique NamemRNA_C-tenellus_contig9779.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9779.4.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.070e-9
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 VNEILERYVPNSWSKPMPDAEPNQREQWIWAKYEQR 108
            VNEI ERYVP+SW+KP PDA+  QREQW+ AKY+ R
Sbjct:   71 VNEIYERYVPSSWTKPTPDADQQQREQWVLAKYKHR 106
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9779.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU92_ECTSI3.070e-969.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9779contigC-tenellus_contig9779:5575..5685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LU92
PFAMsArfGap,C1_2,C2,DENN,DUF3490,PH,RhoGEF,dDENN,uDENN
Model size111
Max annot lvl2759|Eukaryota
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
Exons1
Evalue5.04e-10
EggNOG OGsCOG5347@1|root,KOG2127@1|root,KOG0703@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size111
COG categoryL
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.928144-CDS-C-tenellus_contig9779:5574..56851680790200.928144-CDS-C-tenellus_contig9779:5574..5685Choristocarpus tenellus KU2346CDSC-tenellus_contig9779 5575..5685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9779.4.1prot_C-tenellus_contig9779.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9779 5575..5685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9779.4.1

>prot_C-tenellus_contig9779.4.1 ID=prot_C-tenellus_contig9779.4.1|Name=mRNA_C-tenellus_contig9779.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=37bp
VNEILERYVPNSWSKPMPDAEPNQREQWIWAKYEQR*
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mRNA from alignment at C-tenellus_contig9779:5575..5685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9779.4.1 ID=mRNA_C-tenellus_contig9779.4.1|Name=mRNA_C-tenellus_contig9779.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=111bp|location=Sequence derived from alignment at C-tenellus_contig9779:5575..5685+ (Choristocarpus tenellus KU2346)
GTGAATGAAATACTTGAGCGCTATGTTCCCAACAGCTGGAGCAAACCAAT
GCCGGACGCCGAGCCGAATCAACGGGAGCAGTGGATCTGGGCCAAATATG
AGCAGAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9779:5575..5685+

>mRNA_C-tenellus_contig9779.4.1 ID=mRNA_C-tenellus_contig9779.4.1|Name=mRNA_C-tenellus_contig9779.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=111bp|location=Sequence derived from alignment at C-tenellus_contig9779:5575..5685+ (Choristocarpus tenellus KU2346)
GTGAATGAAATACTTGAGCGCTATGTTCCCAACAGCTGGAGCAAACCAAT
GCCGGACGCCGAGCCGAATCAACGGGAGCAGTGGATCTGGGCCAAATATG
AGCAGAGGTGA
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