mRNA_C-tenellus_contig9770.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9770.1.2
Unique NamemRNA_C-tenellus_contig9770.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: D8LE99_ECTSI (ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE99_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 8.480e-32
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 3 
Query:  435 ESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDITPVD 683
            E+S RPEDKYKV+LFNDNGNTREYVSRSLVQVVG+ E  AF IMQQA+ NGMA VGIWHQEMADAYS+SLK+RGL+++  P +
Sbjct:   70 ETSIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQANDNGMAQVGIWHQEMADAYSTSLKERGLIAETHPAE 152
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A835ZJP8_9STRA (ATP-dependent Clp protease adaptor protein ClpS-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.230e-27
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 3 
Query:  387 GSSVLPREKKLIK-NRQESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDITPVD 683
            G++VL R   LI+    E    P DK+KV+LFNDNGNTREYV+RSLVQV+GM E  A+ IM  AHKNGMA VGIW+ E A+AYS  LK RGLVS+I PV+
Sbjct:   34 GAAVLERPAPLIQPGTAEDQPSPADKFKVMLFNDNGNTREYVARSLVQVIGMTESDAYDIMTMAHKNGMALVGIWNLERAEAYSDQLKTRGLVSEIFPVE 133
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A7S4DBT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBT8_HETAK)

HSP 1 Score: 100 bits (248), Expect = 6.770e-21
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 3 
Query:  411 KKLIKNRQESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDI 671
            KK I  + ES +    KY V+LFND  N REYV+R LV+VVGMPE+QAFAIM +AH+NGM  VG WH+E+A+AY  +L  R L  DI
Sbjct:   73 KKNIDRKAESEAETGGKYTVLLFNDPMNYREYVARCLVEVVGMPEDQAFAIMGEAHRNGMGVVGSWHEELAEAYKEALLARSLTVDI 159
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A7S2V4Q9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Q9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.010e-17
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 3 
Query:  462 YKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDI 671
            Y+++LFNDN NTREYV+R L  +VG+ E +AF IM +AHKNGMA VG W  E+A+AY+ SL + GL S +
Sbjct:   86 YQILLFNDNMNTREYVARCLCTIVGLSEGKAFEIMLEAHKNGMAVVGSWRYELAEAYNESLNRHGLASTL 155
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: B5Y4P7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y4P7_PHATC)

HSP 1 Score: 85.9 bits (211), Expect = 6.220e-16
Identity = 63/178 (35.39%), Postives = 91/178 (51.12%), Query Frame = 3 
Query:  159 SATFRLVALLLVTISSSRAFSPSMLRVSGVARHHAPGTRIFSSVTKSDCPVRDSVTWIAPLMGLDIAIPRERLPPTGSSVL--PREKKLIKNR-QESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDITPVD 683
            ++ F LV L L+  S +  F+PS            P     SSV++S    R S   I           RE +     +VL  P EK  +    +E      + ++V ++ND  NTRE+V+RSLVQV GM E +A+  M QAH+NG+A VG W  E+A+ Y  +L+  G+V DI PV+
Sbjct:    3 ASRFLLVVLALLGSSVTAFFAPSR-----------PKASFGSSVSRSTVAARMSPATIE----------RESVKVGAPAVLDRPAEKTRVDEPVKERKGMGHEAWEVRIYNDGLNTREHVARSLVQVTGMSEMEAYQTMMQAHQNGIAVVGRWVYEVAEMYHDALQNNGIVCDIVPVE 159
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A7S2VY96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VY96_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.150e-15
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 3 
Query:  384 TGSSVLPREKKLIKNRQESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDITPVD 683
            TG  V   EKK +K+R+ + S   D ++V ++ND  NTRE+VSR LVQ+VG+ E  A+  M QAHKNG+A VG +  E A+ Y  +L + G++ D+ PVD
Sbjct:   86 TGGGVGLVEKKAMKDRERTGS---DAWEVRIYNDVKNTREFVSRCLVQIVGLSETFAYQTMMQAHKNGLAAVGTYAFERAEMYHEALTENGIMCDMIPVD 182
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A0M0LSS8_9EUKA (ATP-dependent clp protease adaptor protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LSS8_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.420e-15
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 3 
Query:  459 KYKVVLFNDNGNTREYVSRSLVQVV-GMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDITPVD 683
            KYKV+LFNDN N REYV+R LV  + GM +  A+ +MQ+AHK GMA VG+W  E+A+AY   LK  GL++ +T  D
Sbjct:   82 KYKVLLFNDNVNRREYVARILVGAIPGMSQADAYLVMQKAHKQGMAVVGVWVFEVAEAYCDKLKSGGLIASVTEED 157
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A7S1GM15_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM15_CYCTE)

HSP 1 Score: 81.6 bits (200), Expect = 2.550e-14
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 3 
Query:  429 RQESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDITP 677
            +++   R  ++++V ++ND  NTRE+V+RSLVQ+ G+ E  A+  M QAH+NGMA VG W  E+A+ Y   LK  G++ D+ P
Sbjct:   87 KKQGKHRGNEQWEVRIYNDRMNTREHVARSLVQITGLSESNAYNTMMQAHQNGMAVVGQWAYEIAELYHDRLKGEGIICDLVP 169
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A7S4HUU8_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HUU8_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 3.280e-14
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 3 
Query:  432 QESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVV-GMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVSDITPVD 683
            Q+ + +   K+K++LFNDN N REYV+R LV  V    +  A+ +MQ+AH+NGMA VG+W  E+A+AY   LKQ GL++ +T  D
Sbjct:   74 QQKAPQKGKKWKLLLFNDNVNKREYVARVLVSSVPDFSQADAYKVMQKAHQNGMAVVGVWVFEVAEAYCDKLKQGGLIASVTEED 158
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BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Match: A0A7S2HHZ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HHZ7_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 4.150e-14
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 3 
Query:  423 KNRQESSSRPEDKYKVVLFNDNGNTREYVSRSLVQVV-GMPEEQAFAIMQQAHKNGMATVGIWHQEMADAYSSSLKQRGLVS 665
            K +Q+ ++    K+KV+LFNDN N REYV+R LV  V GM +  A+ +MQ+AHK GMA VGIW  EMA+AY   LK  G +S
Sbjct:   67 KPKQDGANEKAKKWKVLLFNDNVNRREYVARVLVGAVPGMTQADAYLVMQKAHKQGMAVVGIWVFEMAEAYCDQLKSGGGLS 148
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9770.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE99_ECTSI8.480e-3275.90ATP-dependent Clp protease adaptor protein ClpS n=... [more]
A0A835ZJP8_9STRA1.230e-2762.00ATP-dependent Clp protease adaptor protein ClpS-do... [more]
A0A7S4DBT8_HETAK6.770e-2157.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V4Q9_9STRA9.010e-1757.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B5Y4P7_PHATC6.220e-1635.39Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2VY96_9STRA1.150e-1546.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A0M0LSS8_9EUKA1.420e-1553.95ATP-dependent clp protease adaptor protein n=1 Tax... [more]
A0A7S1GM15_CYCTE2.550e-1443.37Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4HUU8_9EUKA3.280e-1447.06Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2HHZ7_9EUKA4.150e-1452.44Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9770contigC-tenellus_contig9770:731..3451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE99
PFAMsClpS
Model size1876
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue7.27e-36
EggNOG OGs2CYZ7@1|root,2S7DJ@2759|Eukaryota
Ec32 ortholog descriptionATP-dependent Clp protease adaptor protein ClpS
Ec32 orthologEc-00_001440.1
DescriptionATP-dependent Clp protease adaptor protein ClpS
Cds size531
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9770.1.2prot_C-tenellus_contig9770.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9770 886..2261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.1366434-UTR-C-tenellus_contig9770:730..8851680790200.1366434-UTR-C-tenellus_contig9770:730..885Choristocarpus tenellus KU2346UTRC-tenellus_contig9770 731..885 +
1680790200.2120502-UTR-C-tenellus_contig9770:2261..34511680790200.2120502-UTR-C-tenellus_contig9770:2261..3451Choristocarpus tenellus KU2346UTRC-tenellus_contig9770 2262..3451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790200.1612961-CDS-C-tenellus_contig9770:885..10291680790200.1612961-CDS-C-tenellus_contig9770:885..1029Choristocarpus tenellus KU2346CDSC-tenellus_contig9770 886..1029 +
1680790200.174176-CDS-C-tenellus_contig9770:1361..15231680790200.174176-CDS-C-tenellus_contig9770:1361..1523Choristocarpus tenellus KU2346CDSC-tenellus_contig9770 1362..1523 +
1680790200.1849144-CDS-C-tenellus_contig9770:1800..19111680790200.1849144-CDS-C-tenellus_contig9770:1800..1911Choristocarpus tenellus KU2346CDSC-tenellus_contig9770 1801..1911 +
1680790200.1992106-CDS-C-tenellus_contig9770:2147..22611680790200.1992106-CDS-C-tenellus_contig9770:2147..2261Choristocarpus tenellus KU2346CDSC-tenellus_contig9770 2148..2261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9770.1.2

>prot_C-tenellus_contig9770.1.2 ID=prot_C-tenellus_contig9770.1.2|Name=mRNA_C-tenellus_contig9770.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=177bp
MSATFRLVALLLVTISSSRAFSPSMLRVSGVARHHAPGTRIFSSVTKSDC
PVRDSVTWIAPLMGLDIAIPRERLPPTGSSVLPREKKLIKNRQESSSRPE
DKYKVVLFNDNGNTREYVSRSLVQVVGMPEEQAFAIMQQAHKNGMATVGI
WHQEMADAYSSSLKQRGLVSDITPVD*
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mRNA from alignment at C-tenellus_contig9770:731..3451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9770.1.2 ID=mRNA_C-tenellus_contig9770.1.2|Name=mRNA_C-tenellus_contig9770.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2721bp|location=Sequence derived from alignment at C-tenellus_contig9770:731..3451+ (Choristocarpus tenellus KU2346)
GTGTTTCTGTCGGAAGGATGAAATTGAGCGTAATATCATGTGTATCCACT
CCATCCTTCCTTGGACTCACTGAAATACAAGAGATACAATATTTTCCCTT
TCCTCCGTTCCATGATTACGAAAACAGGGAACTACAACATTCAAAGTGAC
AGATCATGTCGGCTACATTCCGATTGGTTGCTTTGCTCCTCGTGACTATT
TCATCCTCGCGAGCCTTCAGTCCATCCATGCTTAGAGTATCAGGGGTAGC
ACGACACCATGCACCTGGGACCAGGATTTTCTCGTCTGTGACCAAATCGG
TAAGTCTTGAGTTTTCGGTTGGTCTGCGTCCCTTGTGGCCTTGGCCTTCC
GTTCCATCTACCATGGTGCAGTGTTCAATATATGCAACAGCGTTTGACTT
CAGTTAATGCTAGTAGGAGGTACTGAAAAGGTGAAAGAGAGGGTTGGGAT
TTGGGGGGTCAAACACACCTCCCACCTCGTCGCCTCTGTATCGGTTTTGA
TCGGCAATTGCATGGTCCACAACATAAACTTTGTACCCCCCAAAAAATCT
GCGGGTGCGCTTTGTTCTTCTTCCTACGTATTTTCTCCATTAGGACGCTG
ATTTCTCGTGCCCTGGGTCCCTTATCGATAGGATTGCCCTGTTCGCGACT
CTGTAACTTGGATTGCCCCTCTCATGGGACTTGACATCGCTATTCCGAGG
GAGAGGTTGCCACCAACAGGGTCATCGGTTCTCCCACGTGAAAAGAAGTT
GATCAAAAACAGGCAGGAAAGCTCATCAAGGCCCGAGGACAAGGTGGGTA
CTAATGGAGACCGTTATTAAGAACATGGCTCGCATTTCATGTACGTGTGT
CAAATGATCCTCCTATCTAGCTAACCCTTTCAACAGGGTGTGGTAGTACC
TTTTTCAGGCACTCAAAATGTGTGTATTTCCTCGGCGTTCATGTGTTCAA
GGTCGATAACATGATTGCGAACTCTTCGTTGCTGTGGTCCAACGCCCGCT
TTGTAATTTTCATCCGCAGCCCTCTTTCTGTCCTTCTCTCTTCATATGCG
TGTGTTTGTGTACCATTCAGTACAAGGTGGTGCTGTTTAATGACAATGGC
AACACACGTGAGTACGTTTCTAGGAGCCTTGTACAAGTGGTGGGCATGCC
AGAGGAGCAAGCTTTTGCAATCATGCAGCAGGTCAACACCTACCCATACA
AGAAGATAATGCAGCGCACTTCAACGTTGTTCTTTCTACACATCAAATGC
TCATGTGCACAACACCACTCACTCTCCAGACATGAGTGAACCCGTGAAGA
ACCCCCAAAATTGTCTTTTCCTGCTACCAATATTTTCGTCATTGTTTGCA
CAACAGTCTGTGCAAAAGTCAACCCTAACACATTTTGTCCATGAAACTCT
TCGGACCGTTGAACCAGGCCCACAAGAATGGAATGGCGACTGTGGGTATC
TGGCACCAAGAGATGGCCGATGCATACAGTTCTTCTCTGAAGCAACGGGG
TCTTGTTTCCGACATCACCCCAGTGGATTGATGGCAAGAAGTCAAGCACA
GGCGAAGTCGATGAACCTGAGCAGTTTTAGAGTTCCTTCACATTGTGATT
GTAACAGAGGTAACCTTCCTGAAAAACAGATTTTGGGGTGGGGGTGAGGG
GACGAGGGTGAGACAAATGCATTGAGCAGAAATATCACCAATATCCCCAC
CCTCTCCTTCTTTTCATCCTTCTGAAGTGTTGCACCCACCTACACTACTT
CAACCCTGCGTTCTCCGACATCCTACTCCGGAGTATGTTGACCTTTGTGC
TGTTCACTTATACATACCTCTTTCTTTTGGAGAAAGAGAGCCCACATTAA
TCCCCTAATGTGTATCATCGATTTTTCATGACAGGCACGAAGAAGCACAT
TTGAAACAGGGACATACATAAATGTTTATGTTTTATATGTTGTCAGAGTT
CGTTGGAGTCTTCCACCATCATGAGGGTCAATTCTCTACACCCTAATCTC
AGTCACAATGGTCTATTTCCAAGAATTGGAATCTGCTTGCCTGCATGCCG
CCTGTCTGGGTCATAGATGTTTGGGGCACTGCCCGACCCATCCTATCTAC
AAAAGGGATGCCATACAGGTGGAGACCAGTTTCAGAAAGGGCAACAGTGC
CCGCAGAACATATGGTAATTGCTGAAGAGACAAATAAACGTCTTTCAGGG
CCTTGCAGCATGTCCACAAGGAATGTGGCATGGGAATAGACAAACGATCA
CAAGAGAGACAATGTGCTTTGTGAGTATACCCATGTTGCAAGATGTATGA
CAAATTGTTCAGACACCCGAGGTAATGTTGTACCGTGTATTAATACAGTA
CATATTTGGGACAGGGTTGCCACAGTATTTGATGGTCTCAAGGATTGTGA
AAAGTGAATCCTATACTTGTGTGTGTGGGTGATTGGGTGATTGAGGGTAC
ATGGATATCTGTTGTTCCTCGTGCAACAAAATGTATGCATCCATTGGAGT
GGTTGCCACAGAACACTCAAGACTAGGTTGATGCAAGGTAAGAGAAAGAG
TGCATGCACATCCATAGTAGTGTATGTATTGTATTGATCTTTGGATGCAT
CTACGGAATCAATAAGAAGTGTTCGGTGACTTTTTTCCACAATCCCAATT
TCCTTCCATTGTTCTTAGGCGACAGTCTTGAAATGAGATGAAAGTTGTTC
TGGATGGCAACAACAGCAGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9770:731..3451+

>mRNA_C-tenellus_contig9770.1.2 ID=mRNA_C-tenellus_contig9770.1.2|Name=mRNA_C-tenellus_contig9770.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=531bp|location=Sequence derived from alignment at C-tenellus_contig9770:731..3451+ (Choristocarpus tenellus KU2346)
ATGTCGGCTACATTCCGATTGGTTGCTTTGCTCCTCGTGACTATTTCATC
CTCGCGAGCCTTCAGTCCATCCATGCTTAGAGTATCAGGGGTAGCACGAC
ACCATGCACCTGGGACCAGGATTTTCTCGTCTGTGACCAAATCGGATTGC
CCTGTTCGCGACTCTGTAACTTGGATTGCCCCTCTCATGGGACTTGACAT
CGCTATTCCGAGGGAGAGGTTGCCACCAACAGGGTCATCGGTTCTCCCAC
GTGAAAAGAAGTTGATCAAAAACAGGCAGGAAAGCTCATCAAGGCCCGAG
GACAAGTACAAGGTGGTGCTGTTTAATGACAATGGCAACACACGTGAGTA
CGTTTCTAGGAGCCTTGTACAAGTGGTGGGCATGCCAGAGGAGCAAGCTT
TTGCAATCATGCAGCAGGCCCACAAGAATGGAATGGCGACTGTGGGTATC
TGGCACCAAGAGATGGCCGATGCATACAGTTCTTCTCTGAAGCAACGGGG
TCTTGTTTCCGACATCACCCCAGTGGATTGA
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