mRNA_C-tenellus_contig9766.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9766.2.1
Unique NamemRNA_C-tenellus_contig9766.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: A0A024FXH0_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FXH0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.380e-17
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  226 MLGSFVSGNWNENHINPLLRINWRVCLMPAASGIPAPIAYT*VAGVKKHIVGFVSRS-----LGTIGGI 417
            ML  F SGNWNEN++NPL RINWR  L+PAA+ IPAPIAY  V  VKK +VGF+ R+     LG  GG+
Sbjct:    1 MLWLFESGNWNENNLNPLTRINWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFLIRTSGPLPLGVFGGL 69          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: F4S2J7_MELLP (Uncharacterized protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4S2J7_MELLP)

HSP 1 Score: 83.2 bits (204), Expect = 1.010e-16
Identity = 59/172 (34.30%), Postives = 73/172 (42.44%), Query Frame = -2
Query:   58 MKTSLANAFAMVHLP*IQEFQL*KL-------------------NANTPNRS*RPT------HKSNYMLFYSSNLCIRYWSWNPRGCWH*TYPPIDPQ*GIYMVLIPIAGHKRAQHCSLCQDWVIYPPVAFLGCCSRLSGSLSEIEPQFPVTR*GHSKPIPYHPQLIGQKLE 498
            MK+SLA+AFA+V L  IQEF    +                   N+N P     P        + +Y LF  +N  IRYWSWN RGCWH T PPIDP+        P++G                                  IEP FPVTR  H +P+ YH +LIGQ  E
Sbjct:    1 MKSSLADAFAVVCLTSIQEFTSDDVIQMPPTDPINHYGDPRNQQNSNIPGSLQHPVKCIKVHQEFDYELFNVNNFNIRYWSWNYRGCWHQTCPPIDPR--------PLSG----------------------------------IEPLFPVTRHHHGRPLSYHRKLIGQIFE 130          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: B8CEF3_THAPS (rRNA intron-encoded homing endonuclease (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=B8CEF3_THAPS)

HSP 1 Score: 76.3 bits (186), Expect = 8.900e-15
Identity = 43/63 (68.25%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  508 TKMTRYHRSLNHKLCRLGI--------VRVKKSKSLGARESMVARLKRKEIDGRVSPGVEPAA 672
            +KM RYHRSLNHKLCRLGI           +KSKSLG+  SMVARLK KEIDGR  PGVEPAA
Sbjct:    7 SKMIRYHRSLNHKLCRLGIGGCFLTPPAPYEKSKSLGSGGSMVARLKLKEIDGRAPPGVEPAA 69          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: J9HR62_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HR62_9SPIT)

HSP 1 Score: 77.0 bits (188), Expect = 1.370e-14
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = -2
Query:  238 PTHKSNYMLFYSSNLCIRYWSWNPRGCWH*TYPPIDPQ*GIYMVLIPIAGHK 393
            P+ KSNY LF  +N  IRYWSWN RGCWH T PPIDP+ G+ ++LI I  H+
Sbjct:   15 PSQKSNYELFNCNNFNIRYWSWNYRGCWHQTCPPIDPRKGVQILLIAIPKHR 66          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: A0A6A5LB40_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LB40_LUPAL)

HSP 1 Score: 77.8 bits (190), Expect = 2.240e-14
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 3
Query:   45 QQRFIQVSVLSAVDGRVLAYCGLNG*RGIGVRFRRGSLRDGYNIQGMQQAGKLPNPDTG 221
            ++R IQ+S LS  DGR++AY G     G GVRFRRGSLR+GY+IQG QQA KLPNPDTG
Sbjct:   30 RRRIIQISALSTFDGRIVAYHG-----GDGVRFRRGSLRNGYHIQGRQQARKLPNPDTG 83          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: A0A397IPV8_9GLOM (Uncharacterized protein n=2 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IPV8_9GLOM)

HSP 1 Score: 75.1 bits (183), Expect = 7.240e-14
Identity = 53/119 (44.54%), Postives = 59/119 (49.58%), Query Frame = -3
Query:   24 TICFFTPATYVYAIGAGIPEAAGIRHTLQLILNKGFIWFSFQLPDTKEPSIAPCVRIG*FTRLLHSLDVVAVSQAPSPKSNPNSPLPVKATVSQYPTIHS**DRNLNETL-LWRPAIRK 377
            T  F T  T +YAIGAGI  AAG R  LQL L K F  +SFQL D  EP                      VSQAPSP+SNPNSPLPVK              RNLN++  +   AIRK
Sbjct:    8 TTSFLTATTLIYAIGAGITAAAGTRLALQLFLVKRFKLYSFQLRDPNEPP---------------------VSQAPSPESNPNSPLPVKTM-----------GRNLNDSSPVQDHAIRK 94          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: Q7RN92_PLAYO (Uncharacterized protein n=1 Tax=Plasmodium yoelii yoelii TaxID=73239 RepID=Q7RN92_PLAYO)

HSP 1 Score: 74.3 bits (181), Expect = 1.220e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = -3
Query:   78 TPATYVYAIGAGIPEAAGIRHTLQLILNKGFIWFSFQLPDTKEPSIAPCVRIG*FTRLLHSLDVVAVSQAPSPKSNPNSPLPVKATVSQYPTIHS 362
            T    +YAIGAGI  AAG R  LQLI  K  +  S       +  I P + I         LDVVA+SQAPSP+SN NSPLPVKA + QYP I S
Sbjct:   15 TATILIYAIGAGITAAAGTRLALQLIFGK--VLNSHH--SNYKTKIWPYIVISCHYLSYLELDVVAISQAPSPESNSNSPLPVKAMLGQYPNIKS 105          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: A0A098VSY4_9MICR (Uncharacterized protein n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VSY4_9MICR)

HSP 1 Score: 77.4 bits (189), Expect = 2.090e-13
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 3
Query:   24 LADCRPPQQRFIQVSVLSAVDGRVLAYCGLNG*RGIGVRFRRGSLRDGYNIQGMQQAGKLPNPDTGSNAG 233
            +  CR   +R IQ+S LS  DGR+ AY G NG     VRFRRGSLR+GY+IQG QQA KLPNPDTG   G
Sbjct:   32 MTTCR---RRTIQISALSTFDGRIEAYHGSNG-----VRFRRGSLRNGYHIQGRQQARKLPNPDTGRPLG 93          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: A0A5J4NN02_9TREM (Uncharacterized protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NN02_9TREM)

HSP 1 Score: 76.6 bits (187), Expect = 2.970e-13
Identity = 52/101 (51.49%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  433 PT*VKLSCRLHSW*YPSVNFFTFQPCDHTLPRTQRL*FF----HSDNP*S------A*FMVKATMVS-----SHFRS*LMKTSLANAFAMVHLP*IQEFQL 690
            P  ++LS RLHSW  PSVN F FQ C+HT P  QRL  F      DN  +      A FMV+   VS     S FRS  MKTSLANAFA+V L  IQEF L
Sbjct:  141 PKHIELSRRLHSWWCPSVNSFKFQLCNHTSPGAQRLKGFPGTARGDNKRTTADRQLASFMVRTRTVSDRLRTSDFRSRSMKTSLANAFAVVCLAAIQEFHL 241          
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Match: A0A1E7F0L2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0L2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.730e-13
Identity = 45/74 (60.81%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  493 FHQSRTK-----MTRYHRSLNHKLCRLGIVRV---------KKSKSLGARESMVARLKRKEIDGRVSPGVEPAA 672
            FH  RTK     M RYHRSLNHKLCR GI  V         +  KSLG+  SMVARLK KEIDGR  PGVEPAA
Sbjct:    6 FHCQRTKVRGSKMIRYHRSLNHKLCRQGIGGVSFRLHQHLVRNHKSLGSGGSMVARLKLKEIDGRAPPGVEPAA 79          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9766.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024FXH0_9STRA2.380e-1759.42Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F4S2J7_MELLP1.010e-1634.30Uncharacterized protein n=1 Tax=Melampsora larici-... [more]
B8CEF3_THAPS8.900e-1568.25rRNA intron-encoded homing endonuclease (Fragment)... [more]
J9HR62_9SPIT1.370e-1459.62Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A6A5LB40_LUPAL2.240e-1466.10Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A397IPV8_9GLOM7.240e-1444.54Uncharacterized protein n=2 Tax=Diversispora epiga... [more]
Q7RN92_PLAYO1.220e-1349.47Uncharacterized protein n=1 Tax=Plasmodium yoelii ... [more]
A0A098VSY4_9MICR2.090e-1360.00Uncharacterized protein n=1 Tax=Mitosporidium daph... [more]
A0A5J4NN02_9TREM2.970e-1351.49Uncharacterized protein n=1 Tax=Paragonimus wester... [more]
A0A1E7F0L2_9STRA4.730e-1360.81Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9766contigC-tenellus_contig9766:385..1636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog281687.CJA21249b
Model size694
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons5
Evalue0.000474
EggNOG OGs2DF3V@1|root,2S5RJ@2759|Eukaryota,3AARI@33154|Opisthokonta,3BTYV@33208|Metazoa,3DBCA@33213|Bilateria
Cds size159
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9766.2.1prot_C-tenellus_contig9766.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9766 1478..1636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.8480422-UTR-C-tenellus_contig9766:384..5021680790199.8480422-UTR-C-tenellus_contig9766:384..502Choristocarpus tenellus KU2346UTRC-tenellus_contig9766 385..502 -
1680790199.8629174-UTR-C-tenellus_contig9766:800..8631680790199.8629174-UTR-C-tenellus_contig9766:800..863Choristocarpus tenellus KU2346UTRC-tenellus_contig9766 801..863 -
1680790199.873646-UTR-C-tenellus_contig9766:877..9901680790199.873646-UTR-C-tenellus_contig9766:877..990Choristocarpus tenellus KU2346UTRC-tenellus_contig9766 878..990 -
1680790199.884117-UTR-C-tenellus_contig9766:1219..13961680790199.884117-UTR-C-tenellus_contig9766:1219..1396Choristocarpus tenellus KU2346UTRC-tenellus_contig9766 1220..1396 -
1680790199.9022686-UTR-C-tenellus_contig9766:1413..14771680790199.9022686-UTR-C-tenellus_contig9766:1413..1477Choristocarpus tenellus KU2346UTRC-tenellus_contig9766 1414..1477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.916083-CDS-C-tenellus_contig9766:1477..16361680790199.916083-CDS-C-tenellus_contig9766:1477..1636Choristocarpus tenellus KU2346CDSC-tenellus_contig9766 1478..1636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9766.2.1

>prot_C-tenellus_contig9766.2.1 ID=prot_C-tenellus_contig9766.2.1|Name=mRNA_C-tenellus_contig9766.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=53bp
QLVVNHDHLRIAGLHSNVSFKFLSYQLWMVGYWLTVALTGNGELGFDFGE
GA*
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mRNA from alignment at C-tenellus_contig9766:385..1636-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9766.2.1 ID=mRNA_C-tenellus_contig9766.2.1|Name=mRNA_C-tenellus_contig9766.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1252bp|location=Sequence derived from alignment at C-tenellus_contig9766:385..1636- (Choristocarpus tenellus KU2346)
CAGCTAGTGGTGAATCATGATCACTTGCGGATTGCAGGCCTCCACAGCAA CGTTTCATTCAAGTTTCTGTCCTATCAGCTGTGGATGGTAGGGTATTGGC TTACTGTGGCCTTAACGGGTAACGGGGAATTGGGGTTCGATTTCGGAGAG GGAGCCTGAGAGACGGCTACAACATCCAAGGAATGCAACAGGCGGGTAAA TTACCCAATCCTGACACAGGGAGGTAGTGACAATATATAGCAATGCTGGG CTCTTTTGTGTCCGGCAATTGGAATGAGAACCATATAAATCCCTTATTGA GGATCAATTGGAGGGTATGTCTAATGCCAGCAGCCTCGGGGATTCCAGCT CCAATAGCGTATACATAAGTTGCTGGAGTAAAAAAGCATATAGTTGGATT TGTGAGTCGGTCGCTAGGTTCCGTCCTCCTTGACGAGGCGATCGGGTTAC CTCTAGGGCTTGTTCCATTCTTGGGTAGTCGGTGCCTGGCATTAGGTTGT CGGGTTGTCCGGCGCCTGTCTTTTACTGTGAAAAAAATAGAACGTTCAAA GCAGGCTTAGGTCGTTGGATACATTAGCATGGAATAATGAGATAGGGCCA CGGCGGTCTATTTTGTTAGTTTGCACATTGTGGTAGTGTTTAACAGGAAC GATTGGGGGTATTTGCATTCAATTTTCAGAGTTGAAATTCTTGGATTTAT GGAAGATGAACCATTGCGAAAGCATTTGCCAAGGATGTTTTCATCAATCA AGAACGAAAGTTAGGGATCAAAGATGACTAGATACCATCGTAGCCTTAAC CATAAACTATGCCGACTAGGGATTGTCAGAGTGAAAGTATCTTAGAGGGC ACGAGCTTTTCCCTGTTTGTCCATTTGGGGTTTGGCCTCCCACAAGTATA TAATGACATTTTACCCACTCCAAAATGTTTCCGAGTAGGTAAAATGTGTA CGTTATGGAAAAGAGTGTCTGGAACAAGGATATCGACATCTTCTAACAAA CGCTATAGATATAGCCAAAATTGCATCAAAATTGGAACGTTGGAGTTTGG CCCCCAAATGGACACAGCTCTACCCTCTAAGACACTTTGACTCTCAGTCG TTTTTTCTTGACGACTCCGCCAGCACCTTTCGAGAAATCAAAGTCTTTGG GTGCGAGGGAGAGTATGGTCGCAAGGCTGAAACGTAAAGAAATTGACGGA AGGGTATCACCAGGAGTGGAGCCTGCAGCTTAATTTGACTCAAGTTGGAA AG
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Coding sequence (CDS) from alignment at C-tenellus_contig9766:385..1636-

>mRNA_C-tenellus_contig9766.2.1 ID=mRNA_C-tenellus_contig9766.2.1|Name=mRNA_C-tenellus_contig9766.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=159bp|location=Sequence derived from alignment at C-tenellus_contig9766:385..1636- (Choristocarpus tenellus KU2346)
CAGCTAGTGGTGAATCATGATCACTTGCGGATTGCAGGCCTCCACAGCAA
CGTTTCATTCAAGTTTCTGTCCTATCAGCTGTGGATGGTAGGGTATTGGC
TTACTGTGGCCTTAACGGGTAACGGGGAATTGGGGTTCGATTTCGGAGAG
GGAGCCTGA
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