mRNA_C-tenellus_contig9765.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9765.2.1
Unique NamemRNA_C-tenellus_contig9765.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9765.2.1 vs. uniprot
Match: D8LUA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 4.390e-16
Identity = 84/135 (62.22%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:    1 MENLCLPSLRELYLHQNSITKIEGLQGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRVAGLDSLVHLQVCTNLGLAGNPIMELKDVRRLGSLPSLVELTLDDVHFGTCPVVEVTGYRQFIMCFLRHV 405
            ME LCLP LRELYLHQN I+KIEGL GC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       PI+ ++ +  L  LPSL+ELTLDD+HFGTCPVV   GYR F++  L  V
Sbjct:   35 MEGLCLPGLRELYLHQNKISKIEGLDGCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PIVGVRHLSGLRGLPSLMELTLDDIHFGTCPVVAKAGYRSFVLRCLSQV 166
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BLAST of mRNA_C-tenellus_contig9765.2.1 vs. uniprot
Match: A0A8K1C5F1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5F1_PYTOL)

HSP 1 Score: 62.0 bits (149), Expect = 1.380e-8
Identity = 76/140 (54.29%), Postives = 92/140 (65.71%), Query Frame = 1 
Query:    1 MENLCLPSLRELYLHQNSITKIEGLQGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----KRVAGLDSLVHLQVCTNLGLAGNPIMELKDVRRLGSLPSLVELTLDDVHFGTCPVVEVTGYRQFIMCFLRHV 405
            ME L LP LR+LYL QN I +IEGL+ C     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ++  GL++LV+L+    L LA N +  + D++ L  LP L EL+  D HFG+ PVV    YR   M  LR +
Sbjct:   87 MEALDLPHLRKLYLQQNLIERIEGLEQCRKLQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLQCEKGTGLNALVNLE---RLFLAKNCVRNVDDLQVLRQLPILHELSFSDAHFGSNPVVRHPEYRSLAMTSLRQL 223
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BLAST of mRNA_C-tenellus_contig9765.2.1 vs. uniprot
Match: A0A7S4V9B8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V9B8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.550e-6
Identity = 77/137 (56.20%), Postives = 89/137 (64.96%), Query Frame = 1 
Query:    1 MENLCLPSLRELYLHQNSITKIEGLQGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRVAGLDSLVHLQVCTNLGLAGNPIMELKD--VRRLGSLPSLVELTLDDVHFGTCPVVEVTGYRQFIMCFLRHV 405
            M+ L LP LREL LH+N I+KIEGL GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     GN I    D  +R L  LPS+  ++ +DV+ G  PV + TGYR FIM  L+H+
Sbjct:    1 MKGLVLPRLRELLLHENKISKIEGLDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GGNQIDCFSDCNLRCLSVLPSIRSVSFEDVYHGPNPVCKQTGYRAFIMRQLKHI 134
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BLAST of mRNA_C-tenellus_contig9765.2.1 vs. uniprot
Match: A0A662YI96_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YI96_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.600e-5
Identity = 38/130 (29.23%), Postives = 54/130 (41.54%), Query Frame = 1 
Query:   16 LPSLRELYLHQNSITKIEGLQGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRVAGLDSLVHLQVCTNLGLAGNPIMELKDVRRLGSLPSLVELTLDDVHFGTCPVVEVTGYRQFIMCFLRHV 405
            LP LR LYL QN I +IEGL+                                         G+  LV+L+    L LA N I ++++   L  L +L +LT  D HFG+ P+ +   YR F +  L+ V
Sbjct:   54 LPQLRRLYLQQNRIAQIEGLERWEALLNNAIRSLKATG-----------------------GGVSELVNLKT---LNLANNRIRDVEEFEHLRKLIALRQLTFRDEHFGSNPIADHPDYRSFAITTLKQV 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9765.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LUA4_ECTSI4.390e-1662.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C5F1_PYTOL1.380e-854.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4V9B8_9STRA1.550e-656.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A662YI96_9STRA1.600e-529.23Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9765contigC-tenellus_contig9765:3294..4369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LUA4
PFAMsLRR_4,LRR_9
Model size405
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.19e-17
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Ec32 ortholog descriptionLeucine rich repeat 4
Ec32 orthologEc-14_004270.1
Descriptionaxoneme assembly
Cds size405
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790199.757317-CDS-C-tenellus_contig9765:3293..33731680790199.757317-CDS-C-tenellus_contig9765:3293..3373Choristocarpus tenellus KU2346CDSC-tenellus_contig9765 3294..3373 +
1680790199.7720485-CDS-C-tenellus_contig9765:3616..37731680790199.7720485-CDS-C-tenellus_contig9765:3616..3773Choristocarpus tenellus KU2346CDSC-tenellus_contig9765 3617..3773 +
1680790199.7845016-CDS-C-tenellus_contig9765:4201..43691680790199.7845016-CDS-C-tenellus_contig9765:4201..4369Choristocarpus tenellus KU2346CDSC-tenellus_contig9765 4202..4369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9765.2.1prot_C-tenellus_contig9765.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9765 3294..4369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9765.2.1

>prot_C-tenellus_contig9765.2.1 ID=prot_C-tenellus_contig9765.2.1|Name=mRNA_C-tenellus_contig9765.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=135bp
MENLCLPSLRELYLHQNSITKIEGLQGCPSLQRLWLFSNKISAMENLHYC
GALKELWLHDNRVKRVAGLDSLVHLQVCTNLGLAGNPIMELKDVRRLGSL
PSLVELTLDDVHFGTCPVVEVTGYRQFIMCFLRHV
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mRNA from alignment at C-tenellus_contig9765:3294..4369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9765.2.1 ID=mRNA_C-tenellus_contig9765.2.1|Name=mRNA_C-tenellus_contig9765.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1076bp|location=Sequence derived from alignment at C-tenellus_contig9765:3294..4369+ (Choristocarpus tenellus KU2346)
ATGGAGAATCTGTGCCTGCCCAGCCTGCGCGAGCTGTACCTCCACCAGAA
CAGCATTACCAAGATTGAGGGCCTGCAAGGGTGAGTTGCCAAAAGCAATT
GCAATTCCTTTGTTCAGGAGGTGGCTTGTCTTGATTCATTGGTGTAAATC
ACAAATCAACAAACACCCTGCTCTAGTTGTGAAATGTTGGATCACAGAAC
AGTGTTGACTATACTGTTGCTACTGAAATTGTACAAACAACTTTTGATTC
CTGCCTCCCTCCCTCCATACCACTACACCCCACCCCACCCCACTTGGCAC
CTGAACGCTTGTGGAACCCTCAGCTGCCCGTCCTTGCAGCGCCTTTGGCT
CTTTTCAAACAAGATTTCAGCGATGGAGAACTTGCACTATTGTGGTGCCC
TGAAAGAGTTGTGGTTGCATGACAACAGGGTGAAGCGAGTGGCAGGACTT
GACTCTTTAGTGCATCTACAGGTTTGTACTGTTTTTCCTTGAGCCATCGA
TCGGACACAGTGTGTGATAGGCTGATAGGCACTCCTCCTGCAGATACAGT
TACATGCCGGAGTATTTTGAAGACTATTTGAAGAGTATTTTGAAGAGTAT
TTGAAGAGTATTTAAGACTATTTGGTGCGACTGTCGTTTAGTAGCGTCAG
GGAAGGACGAACTAGCAGAACTCTTTTTGTGAATATTCAGTGAGTATTTC
GAAATGTACTTGACAATGGGAGAATGCAAATGGGCCAAGGCATATAGGGC
TGCAAGAATGTCAAGGTGGGCGATTCCCCGTCGTATGTCTCGTCTGGGAG
ACACAAGAGGATAGCTTTTCGGCATCGTGTTCATGCTCTTTCAGCTATTT
TCATTCCCGCCTAATTCCTATACACACTCCCTCCCCTTGGGTCCTTCTGG
TTACTTAGAATCTGGGGTTGGCAGGAAATCCTATAATGGAGCTTAAGGAT
GTGCGGCGGTTGGGGTCTCTGCCGTCGCTGGTTGAGCTTACTCTGGATGA
TGTGCACTTTGGGACCTGCCCAGTGGTAGAGGTCACTGGCTACAGGCAGT
TCATAATGTGCTTCCTGCGTCATGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9765:3294..4369+

>mRNA_C-tenellus_contig9765.2.1 ID=mRNA_C-tenellus_contig9765.2.1|Name=mRNA_C-tenellus_contig9765.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=405bp|location=Sequence derived from alignment at C-tenellus_contig9765:3294..4369+ (Choristocarpus tenellus KU2346)
ATGGAGAATCTGTGCCTGCCCAGCCTGCGCGAGCTGTACCTCCACCAGAA
CAGCATTACCAAGATTGAGGGCCTGCAAGGCTGCCCGTCCTTGCAGCGCC
TTTGGCTCTTTTCAAACAAGATTTCAGCGATGGAGAACTTGCACTATTGT
GGTGCCCTGAAAGAGTTGTGGTTGCATGACAACAGGGTGAAGCGAGTGGC
AGGACTTGACTCTTTAGTGCATCTACAGGTTTGTACTAATCTGGGGTTGG
CAGGAAATCCTATAATGGAGCTTAAGGATGTGCGGCGGTTGGGGTCTCTG
CCGTCGCTGGTTGAGCTTACTCTGGATGATGTGCACTTTGGGACCTGCCC
AGTGGTAGAGGTCACTGGCTACAGGCAGTTCATAATGTGCTTCCTGCGTC
ATGTG
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