mRNA_C-tenellus_contig9728.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9728.1.1
Unique NamemRNA_C-tenellus_contig9728.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A9SLN8_PHYPA (AP-1 complex subunit gamma n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SLN8_PHYPA)

HSP 1 Score: 70.5 bits (171), Expect = 8.290e-9
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query: 1426 TKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFP 1650
            T  +FQ AVPK  T+R++PASG  LP  S   +TQ++ VT+SL    KPL+M++KI Y+  G+ V E  +V  FP
Sbjct:  682 TDFLFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQ-KPLVMRVKIAYKADGQPVLEQGEVNNFP 755
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A0A2K1JQ28_PHYPA (AP-1 complex subunit gamma n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQ28_PHYPA)

HSP 1 Score: 70.5 bits (171), Expect = 9.700e-9
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query: 1426 TKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFP 1650
            T  +FQ AVPK  T+R++PASG  LP  S   +TQ++ VT+SL    KPL+M++KI Y+  G+ V E  +V  FP
Sbjct:  984 TDFLFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQ-KPLVMRVKIAYKADGQPVLEQGEVNNFP 1057
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A0A0A9VM58_ARUDO (AP-1 complex subunit gamma-2, putative n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9VM58_ARUDO)

HSP 1 Score: 64.7 bits (156), Expect = 1.030e-8
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query: 1426 TKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFPPG 1656
            T  +FQ AVPK   +R++PASG+++P    +AVTQ + VT++ Q   KPL M+++++Y+  G    E  QV+ FP G
Sbjct:   63 TDFIFQAAVPKFIQLRLDPASGNIVPASGNSAVTQGLNVTNN-QHGQKPLAMRIRMSYKVNGEDRLEQGQVSNFPSG 138
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A0A7S1F0P5_NOCSC (AP-1 complex subunit gamma n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F0P5_NOCSC)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-8
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1 
Query: 1408 SGEQEMTKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFPPGF 1659
             G+  +T  +F+ AVPK  T++M+PASG  L P S  +VTQV++V ++     KPL+MKL+I Y   G+   E+ QV  FP GF
Sbjct:  755 GGDVPLTNFVFEAAVPKYITLKMQPASGTWLAPQS-ESVTQVMQVANTTNGE-KPLLMKLRIAYSLNGQDQQELGQVGNFPAGF 836
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A0A453PYS8_AEGTS (GAE domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PYS8_AEGTS)

HSP 1 Score: 65.5 bits (158), Expect = 1.410e-8
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 
Query: 1426 TKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFPPG 1656
            T  +FQ AVPK   +R++PASG+++P     +VTQ   VT++ Q   KPL M+++++Y+  G    E  QV+ FPPG
Sbjct:  105 TDFIFQAAVPKFIQLRLDPASGNIVPANGKGSVTQGFSVTNN-QHGQKPLAMRIRMSYKVNGEDRLEQGQVSNFPPG 180
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A0A4W3J1L0_CALMI (AP-1 complex subunit gamma n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J1L0_CALMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.470e-8
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 1 
Query: 1372 PNL*LFLYT*FVSGEQEMTKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFPP 1653
            PNL +       S E +MT  +FQ AVPK F +++   SG+++   +   VTQVI+V   L    +PL M++KITY Q G  V ++A+V  FPP
Sbjct:  694 PNLTIVTINATNSTEGDMTDFVFQAAVPKTFQLQLLSPSGNLISARNTGVVTQVIKV---LNPQKQPLRMRIKITYNQNGSPVQDLAEVNNFPP 784
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A0A4W3J493_CALMI (AP-1 complex subunit gamma n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J493_CALMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-8
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 1 
Query: 1372 PNL*LFLYT*FVSGEQEMTKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFPP 1653
            PNL +       S E +MT  +FQ AVPK F +++   SG+++   +   VTQVI+V   L    +PL M++KITY Q G  V ++A+V  FPP
Sbjct:  700 PNLTIVTINATNSTEGDMTDFVFQAAVPKTFQLQLLSPSGNLISARNTGVVTQVIKV---LNPQKQPLRMRIKITYNQNGSPVQDLAEVNNFPP 790
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: D8TSS4_VOLCA (AP-1 complex subunit gamma n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TSS4_VOLCA)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-8
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1 
Query: 1420 EMTKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQ-GGRTVTEVAQVAQFPPGF 1659
            E+T    QVAVPK   +++EPASG VLPP     V+Q I V +S Q   K L+M+L+IT+   GG    E+A+VA FPPGF
Sbjct:  722 EVTDYTLQVAVPKFMQIKLEPASGTVLPPRGGGGVSQKIYVNNS-QHGVKQLVMRLRITFTSAGGHAHEELAEVANFPPGF 801
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BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: A0A4W3JBE2_CALMI (AP-1 complex subunit gamma n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JBE2_CALMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.490e-8
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 1 
Query: 1372 PNL*LFLYT*FVSGEQEMTKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFPP 1653
            PNL +       S E +MT  +FQ AVPK F +++   SG+++   +   VTQVI+V   L    +PL M++KITY Q G  V ++A+V  FPP
Sbjct:  718 PNLTIVTINATNSTEGDMTDFVFQAAVPKTFQLQLLSPSGNLISARNTGVVTQVIKV---LNPQKQPLRMRIKITYNQNGSPVQDLAEVNNFPP 808
[Close]
BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Match: V9KFI0_CALMI (AP-1 complex subunit gamma n=4 Tax=Callorhinchus milii TaxID=7868 RepID=V9KFI0_CALMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.500e-8
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 1 
Query: 1372 PNL*LFLYT*FVSGEQEMTKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKPLMMKLKITYQQGGRTVTEVAQVAQFPP 1653
            PNL +       S E +MT  +FQ AVPK F +++   SG+++   +   VTQVI+V   L    +PL M++KITY Q G  V ++A+V  FPP
Sbjct:  723 PNLTIVTINATNSTEGDMTDFVFQAAVPKTFQLQLLSPSGNLISARNTGVVTQVIKV---LNPQKQPLRMRIKITYNQNGSPVQDLAEVNNFPP 813
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9728.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9SLN8_PHYPA8.290e-946.67AP-1 complex subunit gamma n=1 Tax=Physcomitrium p... [more]
A0A2K1JQ28_PHYPA9.700e-946.67AP-1 complex subunit gamma n=2 Tax=Physcomitrium p... [more]
A0A0A9VM58_ARUDO1.030e-841.56AP-1 complex subunit gamma-2, putative n=1 Tax=Aru... [more]
A0A7S1F0P5_NOCSC1.150e-844.05AP-1 complex subunit gamma n=1 Tax=Noctiluca scint... [more]
A0A453PYS8_AEGTS1.410e-841.56GAE domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A4W3J1L0_CALMI1.470e-840.43AP-1 complex subunit gamma n=1 Tax=Callorhinchus m... [more]
A0A4W3J493_CALMI1.480e-840.43AP-1 complex subunit gamma n=1 Tax=Callorhinchus m... [more]
D8TSS4_VOLCA1.480e-849.38AP-1 complex subunit gamma n=1 Tax=Volvox carteri ... [more]
A0A4W3JBE2_CALMI1.490e-840.43AP-1 complex subunit gamma n=2 Tax=Callorhinchus m... [more]
V9KFI0_CALMI1.500e-840.43AP-1 complex subunit gamma n=4 Tax=Callorhinchus m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9728contigC-tenellus_contig9728:2198..4962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHP4
PFAMsAdaptin_N,Alpha_adaptinC2
Model size2166
Max annot lvl2759|Eukaryota
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.04e-18
EggNOG OGsCOG4354@1|root,KOG1062@2759|Eukaryota
Descriptionintracellular protein transport
Cds size240
COG categoryG
BRITEko00000,ko00001,ko03036,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.280285-UTR-C-tenellus_contig9728:2197..27011680790198.280285-UTR-C-tenellus_contig9728:2197..2701Choristocarpus tenellus KU2346UTRC-tenellus_contig9728 2198..2701 -
1680790198.3115418-UTR-C-tenellus_contig9728:3540..49621680790198.3115418-UTR-C-tenellus_contig9728:3540..4962Choristocarpus tenellus KU2346UTRC-tenellus_contig9728 3541..4962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.291136-CDS-C-tenellus_contig9728:2701..28521680790198.291136-CDS-C-tenellus_contig9728:2701..2852Choristocarpus tenellus KU2346CDSC-tenellus_contig9728 2702..2852 -
1680790198.3023343-CDS-C-tenellus_contig9728:3451..35401680790198.3023343-CDS-C-tenellus_contig9728:3451..3540Choristocarpus tenellus KU2346CDSC-tenellus_contig9728 3452..3540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9728.1.1prot_C-tenellus_contig9728.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9728 2702..3540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9728.1.1

>prot_C-tenellus_contig9728.1.1 ID=prot_C-tenellus_contig9728.1.1|Name=mRNA_C-tenellus_contig9728.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=80bp
MTKLMFQVAVPKAFTMRMEPASGHVLPPGSVAAVTQVIRVTSSLQSSTKP
LMMKLKITYQQGGRTVTEVAQVAQFPPGF*
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mRNA from alignment at C-tenellus_contig9728:2198..4962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9728.1.1 ID=mRNA_C-tenellus_contig9728.1.1|Name=mRNA_C-tenellus_contig9728.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2765bp|location=Sequence derived from alignment at C-tenellus_contig9728:2198..4962- (Choristocarpus tenellus KU2346)
AGGTGGATTTTATTTTGACCAAGTCAGACGATGGGAACAACTCCACCATT
GTCACAGCACGCTTCACCAACACCTCCACTGAGGCAAGATAATAAAAATG
ATTAAATATGTGTTTTATGTGATAGGATTTTGTTTTTTTATGTTTGAATT
TGAATTGAATTTCAACTGTAGTGATACAGACTCGCAATTTTATCTTGGAT
TATTTTTATTTTTTACATTATGTTGTGTTGTACCACACTATTAATAGAGA
TCCTATTTCAAGCTGAAAAGAGTCCTTTAATTATTTTTGTTTTGTAAGTG
AAGTGCAGTTGATGTGTCATATCTGACTCTATCTAATGTAGATTAAATGG
ACCCCATGATGTTGTGGGTAACATTAATCTGAAGATAATATTAATTGCAT
GTACTGATTAGTGCCAACTGATCATCGGAAAATACAAAACCAGAAAATTC
TAGAGGTGAGATATGTTTTAGAACTTTTCTTTAGCCTTACTTCCCTCTTT
CCACCAAATAGCAACGATGATATAATAGTGTTTGACACACACACTTTGTG
CAACATCCCTTACTTTGAGTGTACTCAATAATCAGAACAGTAATGTGGAC
GTTGCATGATGACTCGCTTTTTTTTAAATTTTATTTCAAGTGTGATGTGC
AGTGTGTGTTGCTACAGCAGTTACTTTCTAATAGTTATTTTTCATTATTT
TGTCTTTAACAGGTAGTGATTGTTTATGTTTGTGTGCGTTATCCTCCTCT
TCATTTATATTTGGGGTAATATTATTCTTTCCTGGAAGATTAGTATTTTG
TTATCTGGTGTGGGTATTTCATTAAAAATATATATATATTGAGAAAGTGT
TTTCAGTAGGGGATGCAGCAGGACAGTGTATAGGGCAATATTCGCATGAT
ACGCCAATGAGATAACCAACACATACAGAATTGAGAAAATAAATGCTTTC
GTGTTGCTATCTCTTCATCAGGTTGAGACAGATGTCTTTATGGACAGTAC
TGAGTAATGGTGTTACAGGAAATCTTGGAAGTCATTTTTGGATTAAAATG
TGTGGGGGGGGGGGTATACCCTTCACCTTGACAACATTCTATGTGTGTGA
TACAGAGAGGAGTAGAAGATAGGCAAACTTAAGAGTGTTTAGCACATCCA
TGGGCGTCCTTGAATTGGTCGATGGAAGAGAGAGGGACTGTCACAATTTT
ACATACAAGAGAGAGGGATGGTTCACCATTTCATGAAAAATAGTGTGGGT
AAATAAAATGGATTACAAAAATACCACTCGCACACTTGACTCTTTTTATA
TATTTTTTCTAGAATAACTCTACTGAGTTTTGTGAGGTGGTTGCAATATC
TAGGTTTGGATACACCCTATCCCTAACCTTTGACTTTTTCTCTACACCTG
ATTTGTTTCTGGAGAGCAGGAGATGACAAAGCTAATGTTCCAGGTTGCTG
TACCCAAGGCTTTCACTATGCGTATGGAGCCAGCATCAGGGCATGTTCTA
CCTCCTGGAAGGTTGGTTCACAAGAGGGAAGACACTGTAAGAAGTAAAAA
GTATTTCACTCATCTATACCTTTTTGGGACATGGTACACCACATAGAAGT
ACACCTTATTTAGTACCCTTGGACTGGCACAGGTCTTGCACATACATATA
TTGTAGGGTAATGTGAGGGCAATGAATGTGGTGTGTGTTTTTTTAATATT
CTTGTAAATAATAATAAGACGATAATAAGATAATTGTAAGTATTATAATT
TGTGTATGGAATGAGGAGATTTAGGTGCCGGTTCACGTAGAAAAATCATC
TGACTTTAGTGACTGTTGGTGTGAAGAGCATATTGGTCGATTACGTGGTA
TGAGGGTATAAATGGAAGTGTGGGTGGTACAGGATGTTGTGATTATACCA
CAGTTGAAACGGTTTTGGTCGTTGTTGATTTGTTGCACCCTAACCCTAAG
AATATAATAAAATATTTCCAAACGCTGGTCGCACATGATTGAATGCATGA
ATGTCATTCACTGTTCTCATCAAGAAATGTGTCACTATTTCCTGTTGTGT
ATTGTCTCAAGATCACCCCTCTGTTCGTTTTTTTTCACCTCTCTTTGGTC
TTTGGTCCAGTGTTGCTGCAGTCACACAGGTGATTCGGGTCACGTCTAGC
CTGCAATCCTCTACCAAACCCCTCATGATGAAATTGAAGATCACCTACCA
GCAAGGAGGGAGAACTGTAACTGAAGTGGCACAGGTCGCTCAGTTCCCCC
CCGGCTTTTAATTCTCCCTCTCTCCAAAGTAGCTGTTGTAGCTGTCCTGT
AGTGCAAGAGGACTGTGATGAGCAAGGTGGTGTTTGGTACACGACCTTGG
GGTTGGTAGGTAGGTAGGTAGTGGGGACGAATGGGAAATCCTGGTCCCTG
CTATGGGGAGAGTTTGTTAGTGGATGGTCTGGTTGTGCGGTATGATTTTT
TTTTTCTTTTATGTATTTATGAGTTGGCTTTTGTGGCTATTGTAAGGAGG
ACCATGCAACAATAACAAAAAGCAAAGATTTTGTGGTCATGTCCACTTTG
GATATCCACCTCATTATTTTGATTTTTTTAGGCAGGGCGGGGCAGGACCT
GGCATGTCCTCCTCCTCCTCCTCCTTCTTTTTCTTCTTTGTACTTTACCT
TTGGGATGGACAGACAAAAGGTCCATTACATCTTTCCATGAGCTAGCTGT
TAATGCACAGTGTATTATCACTCCTATACAGGGAACCAAAAGCAATGCTA
TGTTGGAAGCACCCA
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Coding sequence (CDS) from alignment at C-tenellus_contig9728:2198..4962-

>mRNA_C-tenellus_contig9728.1.1 ID=mRNA_C-tenellus_contig9728.1.1|Name=mRNA_C-tenellus_contig9728.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=240bp|location=Sequence derived from alignment at C-tenellus_contig9728:2198..4962- (Choristocarpus tenellus KU2346)
ATGACAAAGCTAATGTTCCAGGTTGCTGTACCCAAGGCTTTCACTATGCG
TATGGAGCCAGCATCAGGGCATGTTCTACCTCCTGGAAGTGTTGCTGCAG
TCACACAGGTGATTCGGGTCACGTCTAGCCTGCAATCCTCTACCAAACCC
CTCATGATGAAATTGAAGATCACCTACCAGCAAGGAGGGAGAACTGTAAC
TGAAGTGGCACAGGTCGCTCAGTTCCCCCCCGGCTTTTAA
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