mRNA_C-tenellus_contig9695.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9695.1.2
Unique NamemRNA_C-tenellus_contig9695.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: D8LNR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.020e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 2 
Query:  296 LLTGVSIHALILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLACERFL 559
            L T V+    IL A+K+++GEVG+ +YPVDVLSWD+VSG   LRV   ++VP+ AAL+ VGS   +PCA+ V  +SPFLAGLACER+L
Sbjct:   62 LPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSFVGSCGDVPCAIDVREVSPFLAGLACERYL 149
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: A0A8J6EM83_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EM83_ELECQ)

HSP 1 Score: 79.3 bits (194), Expect = 3.320e-14
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 2 
Query:  281 GEVQTLLTGVSIHALILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            G+ +  L+ V + +LIL ALKE++GEVGA SYP+DVL +D  +  A LR+  S +V +  +LT+VG Y+G  C++ VL  SPFL  LA
Sbjct:   34 GDEKDRLSAVQLKSLILSALKELHGEVGA-SYPLDVLKFDGKTSSAILRIKSSGLVKLWTSLTMVGQYQGQLCSIRVLQTSPFLLALA 120
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: A0A5A9NSM2_9TELE (Ribonuclease P protein subunit p14 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NSM2_9TELE)

HSP 1 Score: 73.2 bits (178), Expect = 4.820e-12
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  323 LILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            LI+ ALKE+YGEVGAA +P D+L +D  S +A LRV    +V + +ALTL+GSY+   CA  V+ +SPFL  L+
Sbjct:   42 LIISALKELYGEVGAA-FPFDLLKFDPSSLKAILRVYNKGLVKLWSALTLLGSYQNEACAFRVIQVSPFLLALS 114
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: A0A1V4JIG1_PATFA (Ribonuclease P protein subunit p14 n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JIG1_PATFA)

HSP 1 Score: 72.8 bits (177), Expect = 6.430e-12
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:  323 LILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            L++ AL+E++GEVGAA  PVD+L++D+ +  A LRV+ S +V + +ALTL+GSY+   CA  VL  SPFL  LA
Sbjct:   46 LVVSALRELHGEVGAA-LPVDILTYDAKTLSAILRVISSGLVKLWSALTLLGSYQNRRCAFRVLQTSPFLLALA 118
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: W5N6K9_LEPOC (Ribonuclease P/MRP subunit p14 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5N6K9_LEPOC)

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-11
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:  323 LILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            LI+ AL+++YGE+GAA +P DVL ++  + +A +RVL S +V + +ALTL+GSY+  PCA  ++ +SP L  L+
Sbjct:   41 LIISALRDLYGEIGAA-FPFDVLKFEENTLKAIIRVLSSGLVKLWSALTLLGSYQNEPCAFRIIQVSPLLLALS 113
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: A0A3B3QVM6_9TELE (Ribonuclease P/MRP subunit p14 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QVM6_9TELE)

HSP 1 Score: 72.0 bits (175), Expect = 1.260e-11
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 2 
Query:  323 LILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            LI+ AL+++YGEVGAA +P DVL +D  S  A LRV  S +V + +ALTL+GSY    CA+ V  +SPFL  L+
Sbjct:   48 LIISALRDLYGEVGAA-FPFDVLKFDEASLTAILRVYSSGLVKLWSALTLLGSYHNESCAVRVTQVSPFLLALS 120
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: UPI001864E3F3 (ribonuclease P protein subunit p14 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864E3F3)

HSP 1 Score: 72.4 bits (176), Expect = 1.540e-11
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:  323 LILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            LI+ ALK++YGE+GAA +P DVL ++  +  A LRV  S +V + +ALTL+GSY+  PCA+ V  +SPFL  L+
Sbjct:   69 LIVSALKDLYGEIGAA-FPFDVLKFEENTLTAVLRVYNSGLVKLWSALTLLGSYQSEPCAVRVTQVSPFLLALS 141
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: UPI001CF96997 (ribonuclease P protein subunit p14 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF96997)

HSP 1 Score: 71.6 bits (174), Expect = 1.720e-11
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:  284 EVQTLLTGVSIHALILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            E +  L       LI+ ALK+++GEVGA S P DVL +D  S  A LRV  S +V + +ALTL+GSY G  CA  V  +SPFL  LA
Sbjct:   35 EEEVRLNDAHFKQLIISALKDLHGEVGA-SLPFDVLKFDEKSLSAILRVYSSGLVKLWSALTLLGSYHGKRCAFRVEQVSPFLLSLA 120
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: A0A7K5YF94_9AVES (RPP14 protein (Fragment) n=12 Tax=Neognathae TaxID=8825 RepID=A0A7K5YF94_9AVES)

HSP 1 Score: 71.6 bits (174), Expect = 1.900e-11
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  308 VSIHALILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            V    L++ AL+E++GEVGAA  PVDVL+++  S  A LRV+ S +V + +ALTL+GSY+   CA  VL  SPFL  L+
Sbjct:   47 VQFKQLVVTALRELHGEVGAA-LPVDVLTYEEKSLSAILRVISSGLVKLWSALTLLGSYQNRRCAFRVLQTSPFLLALS 124
[Close]
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Match: A0A851MKV4_9DEND (RPP14 protein (Fragment) n=1 Tax=Campylorhamphus procurvoides TaxID=190295 RepID=A0A851MKV4_9DEND)

HSP 1 Score: 70.1 bits (170), Expect = 2.770e-11
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:  323 LILDALKEMYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLPCAMTVLGISPFLAGLA 544
            L++ AL+E++GEVGAA  PVDVL+++  +  A LRV+ S +V + +ALTL+GSY+   CA  VL  SPFL  L+
Sbjct:   19 LVVTALRELHGEVGAA-LPVDVLTYEEKTLSAILRVISSGLVKLWSALTLLGSYQNRTCAFRVLQTSPFLLALS 91
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9695.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNR1_ECTSI3.020e-2356.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J6EM83_ELECQ3.320e-1447.73Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
A0A5A9NSM2_9TELE4.820e-1251.35Ribonuclease P protein subunit p14 n=1 Tax=Triplop... [more]
A0A1V4JIG1_PATFA6.430e-1251.35Ribonuclease P protein subunit p14 n=1 Tax=Patagio... [more]
W5N6K9_LEPOC1.000e-1145.95Ribonuclease P/MRP subunit p14 n=2 Tax=Lepisosteus... [more]
A0A3B3QVM6_9TELE1.260e-1151.35Ribonuclease P/MRP subunit p14 n=2 Tax=Paramormyro... [more]
UPI001864E3F31.540e-1150.00ribonuclease P protein subunit p14 n=1 Tax=Megalop... [more]
UPI001CF969971.720e-1148.28ribonuclease P protein subunit p14 n=1 Tax=Protopt... [more]
A0A7K5YF94_9AVES1.900e-1149.37RPP14 protein (Fragment) n=12 Tax=Neognathae TaxID... [more]
A0A851MKV4_9DEND2.770e-1150.00RPP14 protein (Fragment) n=1 Tax=Campylorhamphus p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9695contigC-tenellus_contig9695:2747..4495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7918.ENSLOCP00000016268
Preferred nameRPP14
PFAMsRNase_P_Rpp14
Model size1342
Max annot lvl33208|Metazoa
KEGG koko:K14529
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0099116,GO:1901360,GO:1901363,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Exons2
Evalue9.47e-12
EggNOG OGs2BCSB@1|root,2S10S@2759|Eukaryota,3A3XP@33154|Opisthokonta,3BRFU@33208|Metazoa,3D7R7@33213|Bilateria,48EKZ@7711|Chordata,49BQG@7742|Vertebrata,4A44A@7898|Actinopterygii
Ec32 ortholog descriptionRibonuclease P/MRP protein subunit
Ec32 orthologEc-08_006170.1
EC3.1.26.5
Descriptionribonuclease P
Cds size216
COG categoryS
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.4030838-UTR-C-tenellus_contig9695:2746..30921680790196.4030838-UTR-C-tenellus_contig9695:2746..3092Choristocarpus tenellus KU2346UTRC-tenellus_contig9695 2747..3092 +
1680790196.4426928-UTR-C-tenellus_contig9695:3715..44951680790196.4426928-UTR-C-tenellus_contig9695:3715..4495Choristocarpus tenellus KU2346UTRC-tenellus_contig9695 3716..4495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.4148176-CDS-C-tenellus_contig9695:3092..31841680790196.4148176-CDS-C-tenellus_contig9695:3092..3184Choristocarpus tenellus KU2346CDSC-tenellus_contig9695 3093..3184 +
1680790196.4326332-CDS-C-tenellus_contig9695:3591..37151680790196.4326332-CDS-C-tenellus_contig9695:3591..3715Choristocarpus tenellus KU2346CDSC-tenellus_contig9695 3592..3715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9695.1.2prot_C-tenellus_contig9695.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9695 3093..3715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9695.1.2

>prot_C-tenellus_contig9695.1.2 ID=prot_C-tenellus_contig9695.1.2|Name=mRNA_C-tenellus_contig9695.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=72bp
MYGEVGAASYPVDVLSWDSVSGRASLRVLESTIVPVHAALTLVGSYEGLP
CAMTVLGISPFLAGLACERFL*
back to top

mRNA from alignment at C-tenellus_contig9695:2747..4495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9695.1.2 ID=mRNA_C-tenellus_contig9695.1.2|Name=mRNA_C-tenellus_contig9695.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1749bp|location=Sequence derived from alignment at C-tenellus_contig9695:2747..4495+ (Choristocarpus tenellus KU2346)
GGACTCTAGTGCTGTTTCTCTCACTGTGCGGCCAAGTCACTGCTTTATTT
CTGTCCAGCTGTACGTGGTTCAGTAAGGGGGTTCGGGTAGGCTCAAATCC
TAGTATACTTGAATACTGTGTGCAAAACATTTGCTTCAAATTATTGCTGA
TGTCGCCTACTTCGCTACACCCTCCATCCCTCGACCACTTCACCCGCTAA
TTCCAAATCAAAGGACGTTCGGGAAAGTCCGAAGAAAGAAGAATGGCAGT
GGGGGAAAGGACGAATCATCCCAGGAAAAGGGAGAGGTACAGACTTTGCT
GACCGGTGTTTCCATACACGCGCTAATCCTGGACGCCCTGAAGGAGATGT
ACGGGGAGGTCGGGGCTGCCTCCTACCCTGTTGATGTGCTCTCCTGGGAT
TCAGTCAGTGGTCGAGCCAGCCTCCGAGTTCTGGAAAGGTACGTTCTAGT
ACTGCTGCTCTGGTGTGAGAGGTTTGTCCTGGGTAAGTTACGAGACTGAG
AGACCAATTGCATTGCCTACACTGCCAAGTTGCAGCTGTCTCTAATCCGT
TGAACTAGATCCGACGGTGCGACAGGAATGTAATTCACGAGAGGGAACTT
TGGTCATGATTCGACAAGATATTCCTAAAGGTTAGAAATATCATGGCCGT
TGAGTACATCAGTTATCCTGGAAAATCTGTATCTGTGGTACAGCTTTCCT
GACACCGATACATTCCCCTCCTCAGGATGGGGATATAGCAGCGGAAATGA
ATCACGTGAATTTCACAACAAAGCACGAACAAAAAAAATACCCTCTTTCT
TCTCATTCCCCTCTTCTGCTCTACCTCGGGACACCCTCGCCCCAGCACTA
TTGTGCCTGTTCATGCAGCTTTGACGCTTGTGGGTTCCTATGAAGGTCTA
CCGTGCGCAATGACAGTCCTGGGCATTTCTCCCTTTCTGGCTGGTCTTGC
GTGCGAACGATTCCTCTAATTGTGAGGGAGATATTAGGTGCACGAGAAGG
AAGCGCAAATATGCGTTACATGTCGTATATTGGATAACCTGAGAATTCGC
CCTTTTTCTTGTGGAAGAAGCTCATTCTAATCTTATGAAGGCATAAAGAA
GGCCGGAAGTAATGAGAACAACAATCTCGCAAGGGAGGAATGCGTTCACC
GTATGACTGGCGGATGTGGCAATGACTTTGTTCTCTAGAATGAATCATTT
TCAAAATTGTGATTGTTGAACAGAGCATATCAACCACTTAATTGATGGAT
GTAGTACTCTTGTTCTGAGTTTGAAGTGTCTGGACATCAGACAGATTTTA
TAGTGCGTGGGGTGGAGCATGAGACCATCTGCAGCCTATATTCAATAAAG
ATCTCCAATCGAAGTTTTGCACTGCTATATAACATTACATCAAGTGATAC
AACATACACAGGAACACTAGTTGACAATTCTGAATCTTTCCAAGATTGAG
GCACTTCATTTTGGAGTGTACAGTGGAATTAGATCTATTGGTCTGGTAGT
TGAAATGATGTTGGCGGGCATTTGTCAATGATAACACTACCTATATTAGA
GCACCGTTCCTCTTAGTGCAAAGGAGGTAAGTGTGCAAATTTTGGAGGAA
TCTATGTGTGTGTGTATCATTTATCTTCATGTGCGGATTTCATCACACGT
TAATGTAATATCTTGAAGTGGAGGAAGAAGTGCAACTAGGAATAGCGGTC
AGAAGTGTGCAAGCCCCTTCTCCCCATTGCTGTAGTTAGGGATGGCGGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9695:2747..4495+

>mRNA_C-tenellus_contig9695.1.2 ID=mRNA_C-tenellus_contig9695.1.2|Name=mRNA_C-tenellus_contig9695.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=216bp|location=Sequence derived from alignment at C-tenellus_contig9695:2747..4495+ (Choristocarpus tenellus KU2346)
ATGTACGGGGAGGTCGGGGCTGCCTCCTACCCTGTTGATGTGCTCTCCTG
GGATTCAGTCAGTGGTCGAGCCAGCCTCCGAGTTCTGGAAAGCACTATTG
TGCCTGTTCATGCAGCTTTGACGCTTGTGGGTTCCTATGAAGGTCTACCG
TGCGCAATGACAGTCCTGGGCATTTCTCCCTTTCTGGCTGGTCTTGCGTG
CGAACGATTCCTCTAA
back to top