mRNA_C-tenellus_contig969.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig969.5.1
Unique NamemRNA_C-tenellus_contig969.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A835YZJ0_9STRA (Copper chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.490e-25
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    4 QTVEFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVELVA 222
            +TV FKVGMTCEGCA+A KRILGK+ +GVS V+TDV A  V V+S+G TSPQ MLDAL  W AASGK VEL A
Sbjct:    4 ETVVFKVGMTCEGCANACKRILGKM-SGVSAVNTDVAAKTVTVSSDGTTSPQAMLDALKVWSAASGKPVELAA 75          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A6H5L5L5_9PHAE (HMA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5L5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.030e-23
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    4 QTVEFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVELVA 222
            +T  F VGMTC+GCA+ATKRIL K+E GVS V+ DV A  V V+S+G T+ Q MLDALLKW AASGKSVEL +
Sbjct:    3 ETTVFNVGMTCDGCANATKRILSKME-GVSAVEADVSAKTVTVSSDGSTTKQAMLDALLKWSAASGKSVELAS 74          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A7S4MV96_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MV96_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.080e-19
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   13 EFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVEL 216
            +F+VGMTC+GCA+A KRILGK++ GVS VDT+VEA  V VT++   SP+ ML+ L KWG A+GKSV L
Sbjct:   50 KFEVGMTCDGCANAVKRILGKID-GVSNVDTNVEAKTVVVTADDSISPEFMLEKLQKWGNAAGKSVAL 116          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A1Z5KFX7_FISSO (HMA domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFX7_FISSO)

HSP 1 Score: 82.8 bits (203), Expect = 2.630e-19
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   16 FKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVEL 216
            F VGMTCEGCA+A KRILGK+E GVS++DTDV    V V ++   +P++ML+ L KWG A+GK+VEL
Sbjct:    6 FNVGMTCEGCAAAVKRILGKIE-GVSDIDTDVANKIVIVQADESVTPEMMLEKLEKWGQAAGKTVEL 71          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A2D4BLI7_PYTIN (HMA domain-containing protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BLI7_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 5.870e-18
Identity = 44/71 (61.97%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 QTVEFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVEL 216
            +T EFKVGMTCEGC+SA  RIL K+  GV EV  D+E   V VT  G    Q+MLDALLKW  ASGKSV L
Sbjct:    3 KTTEFKVGMTCEGCSSACTRILSKIP-GVQEVKCDIEKQQVLVT--GDADDQVMLDALLKWSQASGKSVAL 70          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A024GKA2_9STRA (HMA domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKA2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.820e-18
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   10 VEFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVELV 219
            V+FKVGMTCEGC+SA  RIL K++ GVSEV  D+E   ++V  NG   P  ML+AL KW A SGKSVEL+
Sbjct:   36 VKFKVGMTCEGCSSACTRILTKIQ-GVSEVKCDMEEKIIEV--NGTADPNEMLEALKKWSAVSGKSVELL 102          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A448ZPP4_9STRA (HMA domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPP4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.520e-17
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   13 EFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVELVA 222
            +F +GMTC+GCA+A KRIL K++ GV+++ TDVEA    VT +    P +ML+ LLKW +ASGKSV L A
Sbjct:    5 KFDIGMTCDGCANAVKRILMKMD-GVTDIVTDVEAKSAVVTHDESVPPSLMLEKLLKWSSASGKSVALAA 73          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A024U6W9_9STRA (HMA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6W9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.010e-17
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   13 EFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVELV 219
            EFKVGMTCEGC+ A +RIL K+ AGV+ V  D+    V VT  G   P +ML+ALLKW  ASGKSVELV
Sbjct:   74 EFKVGMTCEGCSGACERILKKI-AGVTSVSCDIPGQQVLVT--GTADPAVMLEALLKWSKASGKSVELV 139          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: W4G4A3_9STRA (HMA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4A3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-16
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   13 EFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVELV 219
            EFKVGMTCEGC+ A +RIL K+E GV++V  D+    V VT  G     +ML+ALLKW  ASGKSVELV
Sbjct:    7 EFKVGMTCEGCSGACERILNKIE-GVTKVACDIPGQQVLVT--GTADVTVMLEALLKWSKASGKSVELV 72          
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Match: A0A484DTD9_BRELC (HMA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTD9_BRELC)

HSP 1 Score: 75.9 bits (185), Expect = 1.420e-16
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 TQTVEFKVGMTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDALLKWGAASGKSVELVA 222
            T+T EF V MTC+GC+SA  RIL K+E GV++V  D+E   V V   G     +ML+ALLKW  ASGKSVELVA
Sbjct:    2 TKTTEFMVAMTCDGCSSACTRILTKIE-GVTDVKCDIEKKRVLV--EGDADANVMLEALLKWSKASGKSVELVA 72          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig969.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZJ0_9STRA4.490e-2569.86Copper chaperone n=1 Tax=Tribonema minus TaxID=303... [more]
A0A6H5L5L5_9PHAE1.030e-2365.75HMA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4MV96_9STRA1.080e-1961.76Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KFX7_FISSO2.630e-1959.70HMA domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A2D4BLI7_PYTIN5.870e-1861.97HMA domain-containing protein n=2 Tax=Pythium TaxI... [more]
A0A024GKA2_9STRA6.820e-1860.00HMA domain-containing protein n=1 Tax=Albugo candi... [more]
A0A448ZPP4_9STRA2.520e-1754.29HMA domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A024U6W9_9STRA5.010e-1760.87HMA domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4G4A3_9STRA1.020e-1659.42HMA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A484DTD9_BRELC1.420e-1656.76HMA domain-containing protein n=1 Tax=Bremia lactu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig969contigC-tenellus_contig969:10898..11595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_03012T0
PFAMsHMA
Model size228
Max annot lvl4776|Peronosporales
KEGG koko:K07213
KEGG Pathwayko04978,map04978
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.94e-15
EggNOG OGs2CZEZ@1|root,2SA2R@2759|Eukaryota,3QGFT@4776|Peronosporales
Ec32 ortholog descriptioncopper chaperone
Ec32 orthologEc-15_003910.1
DescriptionHeavy-metal-associated domain
Cds size201
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.0080585-UTR-C-tenellus_contig969:10897..109241680790196.0080585-UTR-C-tenellus_contig969:10897..10924Choristocarpus tenellus KU2346UTRC-tenellus_contig969 10898..10924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.0279684-CDS-C-tenellus_contig969:10924..109361680790196.0279684-CDS-C-tenellus_contig969:10924..10936Choristocarpus tenellus KU2346CDSC-tenellus_contig969 10925..10936 +
1680790196.0402808-CDS-C-tenellus_contig969:11229..112721680790196.0402808-CDS-C-tenellus_contig969:11229..11272Choristocarpus tenellus KU2346CDSC-tenellus_contig969 11230..11272 +
1680790196.0557919-CDS-C-tenellus_contig969:11449..115951680790196.0557919-CDS-C-tenellus_contig969:11449..11595Choristocarpus tenellus KU2346CDSC-tenellus_contig969 11450..11595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig969.5.1prot_C-tenellus_contig969.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig969 10925..11595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig969.5.1

>prot_C-tenellus_contig969.5.1 ID=prot_C-tenellus_contig969.5.1|Name=mRNA_C-tenellus_contig969.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=67bp
MTCEGCASATKRILGKLEAGVSEVDTDVEANFVKVTSNGVTSPQIMLDAL
LKWGAASGKSVELVAP*
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mRNA from alignment at C-tenellus_contig969:10898..11595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig969.5.1 ID=mRNA_C-tenellus_contig969.5.1|Name=mRNA_C-tenellus_contig969.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=698bp|location=Sequence derived from alignment at C-tenellus_contig969:10898..11595+ (Choristocarpus tenellus KU2346)
ACTCAAACTGTTGAGTTCAAGGTGGGGATGACATGCGAGGTGAGGTTAGG GCAATAAAATCGTTGCGTCTGACTGCGAAACCTTATATCTAGGCTCTGTA TCAGATGTGGCAAGGGCCGTTGGTCTATACTCATTGTTATCCACAACTGA ATGTAGGTTAGGGAGTGTTTCTGGTGTGCGATACAGTTGAAGCTCAGTCA GTCTACCAGATGTCCCAGCGACATGCTCTTCCCTACTGCCTTGTCTATAA CTATCTCATCCCGAAGTATAGCTTGTTACGTGCTCATTATTCAATACAAC GTGCATGTGCTATGCCCTCATTGTACACGCAGGGCTGTGCCAGTGCAACC AAAAGAATTCTGGGTAAGCTCGAAGGTGAGGCAACGGATTGCGTAGGAGC AATAACGTCTTCCTTGAGTTGCGCGTGTTAATGTCGATGTAACTGGTTGT ATCCGACCGAAGTCACTGCTTTTCTGGGAACAAGAATGTTTTCTTTGTGT GGGACGTGTTGATGTGATGTATGCCAACCAACCCTATTCCTCGTAACATG AGCAGGTGTGTCAGAGGTGGATACAGATGTGGAAGCGAATTTCGTCAAAG TAACCAGTAACGGAGTCACCAGTCCTCAGATAATGCTTGACGCTCTGCTA AAGTGGGGGGCAGCAAGCGGGAAAAGTGTTGAACTAGTAGCGCCCTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig969:10898..11595+

>mRNA_C-tenellus_contig969.5.1 ID=mRNA_C-tenellus_contig969.5.1|Name=mRNA_C-tenellus_contig969.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=201bp|location=Sequence derived from alignment at C-tenellus_contig969:10898..11595+ (Choristocarpus tenellus KU2346)
ATGACATGCGAGGGCTGTGCCAGTGCAACCAAAAGAATTCTGGGTAAGCT
CGAAGCAGGTGTGTCAGAGGTGGATACAGATGTGGAAGCGAATTTCGTCA
AAGTAACCAGTAACGGAGTCACCAGTCCTCAGATAATGCTTGACGCTCTG
CTAAAGTGGGGGGCAGCAAGCGGGAAAAGTGTTGAACTAGTAGCGCCCTG
A
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