mRNA_C-tenellus_contig9676.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6H5K952_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K952_9PHAE) HSP 1 Score: 157 bits (396), Expect = 4.740e-44 Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 1 Query: 1 VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336 V LNRGFVA +DR+DVEE++EMLE+ENPNP C+GFE G+SPLAG W+LLYTT+LDVLSL +NPAVTVG+IFQ++ DG++I+NIIELQP FAAV ++ GSS+ L R Sbjct: 79 VATLNRGFVAEESDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAV-NKILGSSMTTLTAR 189
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: D8LDC7_ECTSI (Plastid lipid associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC7_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.260e-43 Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 1 Query: 1 VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336 V LNRGFVA DR+DVEE++EMLE+ENPNP C+GFE G+SPLAG W+LLYTT+LDVLSL +NPAVTVG+IFQ++ DG++I+NIIELQP FAAV ++ GSS+ L V+ Sbjct: 155 VATLNRGFVAEELDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAV-NKILGSSMTTLTVK 265
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6S9HUA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUA9_HETAK) HSP 1 Score: 127 bits (318), Expect = 1.280e-33 Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336 LNRGF AT A+ V+ LVE+LE +NPNPMP +G E GTSPL+G WRL+YT ALDVL+++L PAV VGQ++Q ++GD I N+I+LQP+ A + + S++ARL+V+ Sbjct: 103 LNRGFSATAAEARRVQGLVELLEADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEITNVIDLQPSAAPLLNAAGASTVARLKVK 211
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A7S2XYK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK8_9STRA) HSP 1 Score: 122 bits (306), Expect = 8.020e-33 Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 13 NRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336 NRG T ++ + +L+E LE NPNP PC G DGTSPL G W+LL+T ALDVLS+ + PAV VGQ++Q V+ DG I NII+LQP A V + GSS+ARL+VR Sbjct: 11 NRGLTTTNEEKTKIFDLLERLEELNPNPNPCDGLLDGTSPLEGEWQLLFTNALDVLSVGIVPAVYVGQVYQNVNYDGSEITNIIDLQPGLAPVLNPLIGSSVARLKVR 118
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A0G4GXJ9_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GXJ9_VITBC) HSP 1 Score: 122 bits (305), Expect = 1.810e-31 Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 1 Query: 10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDG--KAIENIIELQPAFAAVADRFFGSSLARLRVR 336 +NRGF A D D+ E++E+LE NPNP P +DG+SPL G WRLL+T ALDVL L L PAV VGQ++Q V+ DG A EN++ELQP F +VA+RF GS++ARLRVR Sbjct: 120 VNRGFNAKRPDSADILEVLELLESVNPNPQPNL-MKDGSSPLNGEWRLLFTNALDVLLLGLIPAVQVGQVYQNVNLDGVVNAAENVVELQPQFDSVANRFLGSTVARLRVR 229
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE) HSP 1 Score: 117 bits (293), Expect = 5.110e-30 Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRV 333 +NRG D+ ++ E+VE LE +NPNP P GF +G S LAG W+L++T+ALDVLSL L P V +GQIFQ ++ DG I N+++LQP A V +RF GS+ ARL V Sbjct: 94 VNRGLSCREGDQEEILEIVEELERQNPNPTPNDGFSEGASILAGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEITNVVDLQPKAAPVLERFAGSTSARLEV 201
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6V1M850_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M850_HETAK) HSP 1 Score: 103 bits (257), Expect = 3.240e-25 Identity = 46/87 (52.87%), Postives = 67/87 (77.01%), Query Frame = 1 Query: 76 ELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336 + +NPNPMP +G E GTSPL+G WRL+YT ALDVL+++L PAV VGQ++Q ++GD I N+I+LQP+ A + + S++ARL+V+ Sbjct: 53 QADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEITNVIDLQPSAAPLLNAAGASTVARLKVK 139
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A4D9CVH1_9STRA (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVH1_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.290e-23 Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 13 NRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFF------GSSLARLRV 333 N+GF + ++R D+++ + LE NP P P + F GTSPL+G WRL+YT ALDVL L L P +G++FQ +S DGK+I N++E+ + ++ FF G S ARLRV Sbjct: 115 NKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLS--FFPLLGKLGDSTARLRV 225
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: R7Q658_CHOCR (PAP_fibrillin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q658_CHOCR) HSP 1 Score: 80.1 bits (196), Expect = 1.080e-15 Identity = 52/120 (43.33%), Postives = 66/120 (55.00%), Query Frame = 1 Query: 1 VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSL-NPAVTVGQIFQ---EVSGDGKA-----IENIIELQPAFAAVADRFFGSSLARLRV 333 V+ NRG A+ DR ++ LV LE P P D L G WRLL+T ALDVLSL L P VGQIFQ EV +GK IEN+++L+PAFA V++ G S+ + V Sbjct: 96 VSSTNRGLTASADDRANILSLVAELERAKPPTAPA----DDPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYEVPLEGKGDYDYDIENVVQLEPAFAPVSNVLGGQSITSITV 211
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A2V3J8M9_9FLOR (Plastid-lipid-associated protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8M9_9FLOR) HSP 1 Score: 76.3 bits (186), Expect = 2.780e-14 Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSL-NPAVTVGQIFQEVSGDGK---AIENIIELQPAFAAVADRFFGSSLARLRV 333 +NRG A+ + R + L+E +E ENP P C + D L G WRL++T ALDVLSL L P V +++Q + + ++ N++ L+PA A V++ FFG ++ L V Sbjct: 104 VNRGLAASPSVREQILALIEQIERENPTP--CPTYSD---LLLGEWRLVFTNALDVLSLGLLAPIALVSEVYQNIENSDQNDFSVTNVVNLEPAIAPVSNSFFGRTMGALYV 210 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9676.1.1 >prot_C-tenellus_contig9676.1.1 ID=prot_C-tenellus_contig9676.1.1|Name=mRNA_C-tenellus_contig9676.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRback to top mRNA from alignment at C-tenellus_contig9676:361..1361- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9676.1.1 ID=mRNA_C-tenellus_contig9676.1.1|Name=mRNA_C-tenellus_contig9676.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1001bp|location=Sequence derived from alignment at C-tenellus_contig9676:361..1361- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9676:361..1361- >mRNA_C-tenellus_contig9676.1.1 ID=mRNA_C-tenellus_contig9676.1.1|Name=mRNA_C-tenellus_contig9676.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig9676:361..1361- (Choristocarpus tenellus KU2346)back to top |