mRNA_C-tenellus_contig9676.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9676.1.1
Unique NamemRNA_C-tenellus_contig9676.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6H5K952_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K952_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.740e-44
Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336
            V  LNRGFVA  +DR+DVEE++EMLE+ENPNP  C+GFE G+SPLAG W+LLYTT+LDVLSL +NPAVTVG+IFQ++  DG++I+NIIELQP FAAV ++  GSS+  L  R
Sbjct:   79 VATLNRGFVAEESDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAV-NKILGSSMTTLTAR 189          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: D8LDC7_ECTSI (Plastid lipid associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC7_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.260e-43
Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336
            V  LNRGFVA   DR+DVEE++EMLE+ENPNP  C+GFE G+SPLAG W+LLYTT+LDVLSL +NPAVTVG+IFQ++  DG++I+NIIELQP FAAV ++  GSS+  L V+
Sbjct:  155 VATLNRGFVAEELDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAV-NKILGSSMTTLTVK 265          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6S9HUA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUA9_HETAK)

HSP 1 Score: 127 bits (318), Expect = 1.280e-33
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336
            LNRGF AT A+   V+ LVE+LE +NPNPMP +G E GTSPL+G WRL+YT ALDVL+++L PAV VGQ++Q ++GD   I N+I+LQP+ A + +    S++ARL+V+
Sbjct:  103 LNRGFSATAAEARRVQGLVELLEADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEITNVIDLQPSAAPLLNAAGASTVARLKVK 211          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A7S2XYK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.020e-33
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   13 NRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336
            NRG   T  ++  + +L+E LE  NPNP PC G  DGTSPL G W+LL+T ALDVLS+ + PAV VGQ++Q V+ DG  I NII+LQP  A V +   GSS+ARL+VR
Sbjct:   11 NRGLTTTNEEKTKIFDLLERLEELNPNPNPCDGLLDGTSPLEGEWQLLFTNALDVLSVGIVPAVYVGQVYQNVNYDGSEITNIIDLQPGLAPVLNPLIGSSVARLKVR 118          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A0G4GXJ9_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GXJ9_VITBC)

HSP 1 Score: 122 bits (305), Expect = 1.810e-31
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDG--KAIENIIELQPAFAAVADRFFGSSLARLRVR 336
            +NRGF A   D  D+ E++E+LE  NPNP P    +DG+SPL G WRLL+T ALDVL L L PAV VGQ++Q V+ DG   A EN++ELQP F +VA+RF GS++ARLRVR
Sbjct:  120 VNRGFNAKRPDSADILEVLELLESVNPNPQPNL-MKDGSSPLNGEWRLLFTNALDVLLLGLIPAVQVGQVYQNVNLDGVVNAAENVVELQPQFDSVANRFLGSTVARLRVR 229          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.110e-30
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRV 333
            +NRG      D+ ++ E+VE LE +NPNP P  GF +G S LAG W+L++T+ALDVLSL L P V +GQIFQ ++ DG  I N+++LQP  A V +RF GS+ ARL V
Sbjct:   94 VNRGLSCREGDQEEILEIVEELERQNPNPTPNDGFSEGASILAGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEITNVVDLQPKAAPVLERFAGSTSARLEV 201          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A6V1M850_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M850_HETAK)

HSP 1 Score: 103 bits (257), Expect = 3.240e-25
Identity = 46/87 (52.87%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   76 ELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFFGSSLARLRVR 336
            + +NPNPMP +G E GTSPL+G WRL+YT ALDVL+++L PAV VGQ++Q ++GD   I N+I+LQP+ A + +    S++ARL+V+
Sbjct:   53 QADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEITNVIDLQPSAAPLLNAAGASTVARLKVK 139          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A4D9CVH1_9STRA (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVH1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.290e-23
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   13 NRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADRFF------GSSLARLRV 333
            N+GF  + ++R D+++ +  LE  NP P P + F  GTSPL+G WRL+YT ALDVL L L P   +G++FQ +S DGK+I N++E+    + ++  FF      G S ARLRV
Sbjct:  115 NKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLS--FFPLLGKLGDSTARLRV 225          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: R7Q658_CHOCR (PAP_fibrillin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q658_CHOCR)

HSP 1 Score: 80.1 bits (196), Expect = 1.080e-15
Identity = 52/120 (43.33%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    1 VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSL-NPAVTVGQIFQ---EVSGDGKA-----IENIIELQPAFAAVADRFFGSSLARLRV 333
            V+  NRG  A+  DR ++  LV  LE   P   P     D    L G WRLL+T ALDVLSL L  P   VGQIFQ   EV  +GK      IEN+++L+PAFA V++   G S+  + V
Sbjct:   96 VSSTNRGLTASADDRANILSLVAELERAKPPTAPA----DDPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYEVPLEGKGDYDYDIENVVQLEPAFAPVSNVLGGQSITSITV 211          
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Match: A0A2V3J8M9_9FLOR (Plastid-lipid-associated protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8M9_9FLOR)

HSP 1 Score: 76.3 bits (186), Expect = 2.780e-14
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   10 LNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWRLLYTTALDVLSLSL-NPAVTVGQIFQEVSGDGK---AIENIIELQPAFAAVADRFFGSSLARLRV 333
            +NRG  A+ + R  +  L+E +E ENP P  C  + D    L G WRL++T ALDVLSL L  P   V +++Q +    +   ++ N++ L+PA A V++ FFG ++  L V
Sbjct:  104 VNRGLAASPSVREQILALIEQIERENPTP--CPTYSD---LLLGEWRLVFTNALDVLSLGLLAPIALVSEVYQNIENSDQNDFSVTNVVNLEPAIAPVSNSFFGRTMGALYV 210          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9676.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K952_9PHAE4.740e-4466.07PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
D8LDC7_ECTSI1.260e-4366.07Plastid lipid associated protein n=1 Tax=Ectocarpu... [more]
A0A6S9HUA9_HETAK1.280e-3355.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XYK8_9STRA8.020e-3354.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4GXJ9_VITBC1.810e-3157.66PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
A0A6H5KJ99_9PHAE5.110e-3051.85PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A6V1M850_HETAK3.240e-2552.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CVH1_9STRA3.290e-2344.25PAP_fibrillin domain-containing protein n=3 Tax=Mo... [more]
R7Q658_CHOCR1.080e-1543.33PAP_fibrillin domain-containing protein n=1 Tax=Ch... [more]
A0A2V3J8M9_9FLOR2.780e-1437.50Plastid-lipid-associated protein, chloroplastic n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9676contigC-tenellus_contig9676:361..1361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJD3
PFAMsPAP_fibrillin
Model size336
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.34e-30
EggNOG OGs28JPH@1|root,2QS2T@2759|Eukaryota
Ec32 ortholog descriptionplastid lipid associated protein
Ec32 orthologEc-25_001740.1
Descriptionresponse to acid chemical
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790195.1574743-CDS-C-tenellus_contig9676:360..5471680790195.1574743-CDS-C-tenellus_contig9676:360..547Choristocarpus tenellus KU2346CDSC-tenellus_contig9676 361..547 -
1680790195.1720753-CDS-C-tenellus_contig9676:1212..13611680790195.1720753-CDS-C-tenellus_contig9676:1212..1361Choristocarpus tenellus KU2346CDSC-tenellus_contig9676 1213..1361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9676.1.1prot_C-tenellus_contig9676.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9676 361..1361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9676.1.1

>prot_C-tenellus_contig9676.1.1 ID=prot_C-tenellus_contig9676.1.1|Name=mRNA_C-tenellus_contig9676.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp
VTVLNRGFVATGADRVDVEELVEMLELENPNPMPCKGFEDGTSPLAGHWR
LLYTTALDVLSLSLNPAVTVGQIFQEVSGDGKAIENIIELQPAFAAVADR
FFGSSLARLRVR
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mRNA from alignment at C-tenellus_contig9676:361..1361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9676.1.1 ID=mRNA_C-tenellus_contig9676.1.1|Name=mRNA_C-tenellus_contig9676.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1001bp|location=Sequence derived from alignment at C-tenellus_contig9676:361..1361- (Choristocarpus tenellus KU2346)
GTCACCGTGCTCAATCGTGGCTTTGTGGCAACCGGTGCCGACAGAGTTGA CGTGGAAGAGCTGGTAGAGATGCTTGAGCTGGAGAACCCTAATCCAATGC CCTGCAAGGGCTTTGAGGATGGCACATCTCCATTAGCTGGTCACTGGAGG TAAAGGTAGAGGGCAGCTTGGGGGGGGCTCCCCTTATCTTTTCCTACAAT GTCGCATCTCACTGCAGAGTAGAAGAGATAGATGATACATGGTGCGCATT CAGTGAGGGGTAGGGTTAGGGTTAGGGTTAGCAAAGTCAACGAGTGAAAT AATATAGAATCCATCCCATCCATGTCCAAAATAGACCCCACTATTATCGT ACGTTAGTACCAAAGTACCAGTAGCATACGCCCGAAGAATTGTAGCGCTG GTGGTTTCGAGGCCATGTCAGAGATACCTGCCAACCAGGTATCAAGGGGA TCAGTGGACCAGAATGGTATACCACCAATACACATATGTATATACCGATA ATGGTATATGTAGAATGCTTGATGCTGTGATTGGTTTCTTTCACAGTAGG TAGGTGCTTAGTCATACCGTTCCACCAGCACTTGACAGTTACAGGATTAG GTACCCCGGTTGTTATCCCAATGTACCCGATTTTCCTAACCCTGCTCTAG CAGTAGTTCACAAGTGCAGACCAATCCTCCCCCTGAACCCCACACTGCCT CATGGCCCCCCCTCCTCTCTCAAGTCCACGATTGCTCTGACCCGCAGCCC CTACTCGACACATTTTACACCCTTTTGGGGGGGGGGGGGTCTGGTGCCTT TTCTGCTGTACAAGGCTCTTGTACACGACGGCATTGGACGTCCTGTCCCT GTCGCTGAACCCTGCAGTCACGGTCGGACAGATCTTTCAGGAGGTTTCCG GAGATGGGAAGGCGATAGAAAACATCATTGAGCTGCAGCCTGCCTTCGCC GCCGTTGCGGATCGGTTCTTTGGCAGTTCCCTGGCACGACTAAGAGTGAG A
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Coding sequence (CDS) from alignment at C-tenellus_contig9676:361..1361-

>mRNA_C-tenellus_contig9676.1.1 ID=mRNA_C-tenellus_contig9676.1.1|Name=mRNA_C-tenellus_contig9676.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig9676:361..1361- (Choristocarpus tenellus KU2346)
GTCACCGTGCTCAATCGTGGCTTTGTGGCAACCGGTGCCGACAGAGTTGA
CGTGGAAGAGCTGGTAGAGATGCTTGAGCTGGAGAACCCTAATCCAATGC
CCTGCAAGGGCTTTGAGGATGGCACATCTCCATTAGCTGGTCACTGGAGG
CTCTTGTACACGACGGCATTGGACGTCCTGTCCCTGTCGCTGAACCCTGC
AGTCACGGTCGGACAGATCTTTCAGGAGGTTTCCGGAGATGGGAAGGCGA
TAGAAAACATCATTGAGCTGCAGCCTGCCTTCGCCGCCGTTGCGGATCGG
TTCTTTGGCAGTTCCCTGGCACGACTAAGAGTGAGA
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