mRNA_C-tenellus_contig9665.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig9665.4.1
Unique Name	mRNA_C-tenellus_contig9665.4.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig9665.4.1 vs. uniprot
Match: A0A6H5L5A1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.430e-16
Identity = 57/105 (54.29%), Postives = 65/105 (61.90%), Query Frame = 1

Query:    1 MPRLLDPDRLQKEIDAQKKRAEALAHLSKHSCGPSEYERNVETKGLDQAEAEKGMGGPKLGDNTLEAVTVRKAQQSYKELCAKGALLQQQSQLRDGLQEKVTKGG 315
            M RL DP RLQKEI+AQKKRAEALA LS  S G   +            E  K   G K GDNTLE VT+RKAQQ+Y E  AK  LLQQQ+ +R+G+Q K   GG
Sbjct:    1 MSRLTDPARLQKEIEAQKKRAEALALLS--SSGGERH--------FKPGEIRKARDG-KDGDNTLEVVTLRKAQQTYLEQSAKERLLQQQNSVREGVQRKQAGGG 94

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BLAST of mRNA_C-tenellus_contig9665.4.1 vs. uniprot
Match: D7FXC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 9.080e-16
Identity = 57/105 (54.29%), Postives = 65/105 (61.90%), Query Frame = 1

Query:    1 MPRLLDPDRLQKEIDAQKKRAEALAHLSKHSCGPSEYERNVETKGLDQAEAEKGMGGPKLGDNTLEAVTVRKAQQSYKELCAKGALLQQQSQLRDGLQEKVTKGG 315
            M RL DP RLQKEI+AQKKRAEALA LS  S G   +            E  K   G K GDNTLE VT+RKAQQ+Y E  AK  LLQQQ+ +R+G+Q K   GG
Sbjct:    1 MSRLTDPARLQKEIEAQKKRAEALALLS--SSGGERH--------FKPGEIRKARDG-KDGDNTLEVVTLRKAQQTYLEQSAKERLLQQQNSVREGVQRKQAGGG 94

[Close]

BLAST of mRNA_C-tenellus_contig9665.4.1 vs. uniprot
Match: A0A7S2W7K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7K5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.100e-5
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1

Query:    7 RLLDPDRLQKEIDAQKKRAEALAHLSKHSCGPSEYERNVETKGLDQAEAEKGMGGPKLGDNTLEAVTVRKAQQSYKELCA----KGALLQQQSQLR 282
            ++L+  +L+KE+DAQ KRAEALA+L K+ CGPSE+E+  +   +          G +  DNTLE    R+ +            K  L+QQQ  LR
Sbjct:   64 KVLEGGKLKKELDAQAKRAEALAYLQKNGCGPSEWEKTGKVASI---------SGQR--DNTLEVTKERRRKXXXXXQARLQGLKAKLMQQQEALR 148

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9665.4.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9665.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5L5A1_9PHAE	6.430e-16	54.29	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D7FXC0_ECTSI	9.080e-16	54.29	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2W7K5_9STRA	5.100e-5	37.50	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9665	contig	C-tenellus_contig9665:3730..5835 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D7FXC0
Preferred name	PQBP1
PFAMs	WW
Model size	330
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG ko	ko:K00799,ko:K12865
KEGG TC	1.A.12.2.2,1.A.12.3.2
KEGG Reaction	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathway	ko00480,ko00980,ko00982,ko00983,ko01524,ko03040,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map03040,map05200,map05204,map05225,map05418
KEGG Module	M00353
Hectar predicted targeting category	other localisation
GOs	GO:0000375,GO:0000377,GO:0000380,GO:0000398,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001817,GO:0001819,GO:0002218,GO:0002230,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002831,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005791,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006417,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008022,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0008380,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0010769,GO:0010975,GO:0012505,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032101,GO:0032268,GO:0032270,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032528,GO:0032838,GO:0032991,GO:0033043,GO:0034248,GO:0034250,GO:0034641,GO:0035770,GO:0036464,GO:0042048,GO:0042051,GO:0042052,GO:0042221,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043021,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043330,GO:0043331,GO:0043484,GO:0043900,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044877,GO:0045088,GO:0045089,GO:0045595,GO:0045664,GO:0045724,GO:0045727,GO:0045935,GO:0046483,GO:0046486,GO:0046530,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048814,GO:0048856,GO:0048869,GO:0050688,GO:0050691,GO:0050767,GO:0050773,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0060255,GO:0060284,GO:0060491,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071359,GO:0071360,GO:0071407,GO:0071598,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090596,GO:0097159,GO:0097458,GO:0097546,GO:0098542,GO:0099568,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120111,GO:0140110,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1902017,GO:1902115,GO:1902117,GO:1902680,GO:1902855,GO:1902857,GO:1903506,GO:1903508,GO:1990904,GO:2000026,GO:2000112,GO:2001141
Exons	3
Evalue	1.49e-16
EggNOG OGs	KOG3427@1\|root,KOG3427@2759\|Eukaryota
Ec32 ortholog description	WW domain
Ec32 ortholog	Ec-04_000040.1
EC	2.5.1.18
Description	cellular response to exogenous dsRNA
Cds size	330
COG category	A
BRITE	ko00000,ko00001,ko00002,ko01000,ko02000,ko03041

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790194.629618-CDS-C-tenellus_contig9665:3729..3796	1680790194.629618-CDS-C-tenellus_contig9665:3729..3796	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig9665 3730..3796 +
1680790194.6428068-CDS-C-tenellus_contig9665:4700..4843	1680790194.6428068-CDS-C-tenellus_contig9665:4700..4843	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig9665 4701..4843 +
1680790194.654042-CDS-C-tenellus_contig9665:5715..5835	1680790194.654042-CDS-C-tenellus_contig9665:5715..5835	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig9665 5716..5835 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9665.4.1	prot_C-tenellus_contig9665.4.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig9665 3730..5835 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig9665:3730..5835+
coding sequence from alignment at C-tenellus_contig9665:3730..5835+

protein sequence of mRNA_C-tenellus_contig9665.4.1

>prot_C-tenellus_contig9665.4.1 ID=prot_C-tenellus_contig9665.4.1|Name=mRNA_C-tenellus_contig9665.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=110bp
MPRLLDPDRLQKEIDAQKKRAEALAHLSKHSCGPSEYERNVETKGLDQAE
AEKGMGGPKLGDNTLEAVTVRKAQQSYKELCAKGALLQQQSQLRDGLQEK
VTKGGGKSAG

mRNA from alignment at C-tenellus_contig9665:3730..5835+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig9665.4.1 ID=mRNA_C-tenellus_contig9665.4.1|Name=mRNA_C-tenellus_contig9665.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2106bp|location=Sequence derived from alignment at C-tenellus_contig9665:3730..5835+ (Choristocarpus tenellus KU2346)
ATGCCGCGGCTGTTGGACCCTGATCGGCTGCAGAAAGAGATCGATGCCCA
GAAGAAGCGTGCGGAGGGTTAGTCTTGCCTATGAATTGTTACTCATTTAT
TGTTGTAGTGGGTTCGATGTTGTTGACCCTTATGAACTCGACGTGTACGT
TGCCCATTGATGAAGGTTAATCAAGGAACATATCTTTGCAGGTTAATTTT
CCATTTTATCTTACACCCCTACCACATGACGTTCCGTTGGCGCCTTGGAG
GAGAGCTTGGCTGTGCTTGTAGGCATTAATTTTGCTGACTTTCTTTGACA
TCGTTTAAACCCTACAAGGCTATTATCGTCCTGGGTGGCTCCTACTTGGT
TCTCTCCTTCGATACTCTCGTTGACGCTGATACTCTATTTAGGCATCCCC
TCAATTGGGTATGCTCTGTCGAGGCACTCAATGTAGTATTTACCAATGTT
TTGCAAGAGGCAGGTATCATGATCACCCCTCAGAGCTGGCGTTCCTCTTG
GTCTCTATCTTTTCCACCTTCGCCCGTGAATCTTGGCAAGTGATTAATGG
AAAGGTATTCTGCAGTAATCGATTATTTGTCATGCACTCGCATCTCTCAG
AACACGTTTCGATGCTGGCAAACTTCGTGCTTTGGTATGTAAGATTTCGG
AGAGTCGCCACCCCCACCTTCCTGCCTCGTACGGCCGAGAGGACCTGGCT
TAGGTGGTGCACCTCATTCCACTGCCAATACGGGGAGTACTTCATTATTT
AAAGTGTGGAAGAATCCCTAGAACCATCCCCATCCCAGCAGCAACCACTT
GCCATTTACCAACTTGTCTTGTCTCTCTTCTCATCCTGAATTTTGTACAA
CGATGTATATTATGTGCTCCTTCCTTTCCATTAATCGCACTCCAGTATAT
CACTCTCGTTCCAGTATAGGTCGCAGTTCTTATACCAACAGCTCCTGCGA
TCCCTGTGCCACTGTTGTTAGCGCTGGCACACCTCAGTAAGCACAGTTGT
GGTCCCAGCGAGTATGAGAGGAATGTGGAGACCAAGGGACTGGACCAGGC
AGAGGCCGAGAAGGGAATGGGGGGGCCTAAGCTTGGAGACAACACCCTTG
AGGCTGTGACAGTGGTATGTCAAGGACAGGAGGGATAGATTATGGAGGGA
GGGGAGAGGGAGAGCAGAGTAAGGTTGGATTTGTGAATCGGTTGTGTTGC
CCCCAAATCTGTTGTTGTGCCAAGGAGTATCCAGTCATTTTTGGTTGTTA
CTACTCAAGTATATGAATGTTACGCTGAAGGAAATCATGAAGGTCCCACC
CTGCCTCACGCTTGTCCACTTCCATTTTCTTTCTTGCACTTTTGCTATGA
TGTCGCTCCCCATTTCGGAAAATTCAGCATAATCTAACCGCACGTGAATT
GTATAGTGGGATATGGCTAGTTATAGTGTATCTTGATTTTATTTGTCCCT
CCTCTCCACCCTCAATGGTGCATTTCACTATCCTTGCATGTAGCAACTTG
ACCCTTTCACACCTGGCAGTCGTAGTCATGTTAGCACTTCTTGGATCTGC
AGTTCTCATAACCATTCCCATCGTGCACAAGAATTTTTCGCAAACACAGA
TACACACATGTGGTCCAGTAGATTCCTTGCCCTGTACTGGTGGATGATGT
TACAGACAGGAATCGCTTGGCATGGGTAAAGAGACAAGTACCTCTGTGTG
TCATAACAGAACAAAAATCGTATCGGTATACCCCATCTTTCCCACAAGTA
GTTTCTTCTTTTTTTTCTTCAGTATTTGTACTATGTTGTCCGTAGATAGA
TGGTATATTGGGAAATATTATGATTTGAAGTGGATTCATTAAATCAGAGT
AGGTTAAAATGTATAAGTTAAAGACCCGAGGCGAGACTTGAACTCGCGAT
CTCCTCTACCCTAAAGAGGAATCTTACCAACTAGACCACCCGGGCTCTGT
TCTTAATTCTCGCCTATTGCTCTGTATATCAAAAAGAGGAAGGCCCAGCA
GTCATACAAAGAACTCTGCGCAAAGGGGGCTCTCCTGCAGCAACAGTCAC
AACTCCGCGACGGTTTGCAGGAGAAGGTCACAAAGGGGGGGGGCAAGAGT
GCCGGG

Coding sequence (CDS) from alignment at C-tenellus_contig9665:3730..5835+

>mRNA_C-tenellus_contig9665.4.1 ID=mRNA_C-tenellus_contig9665.4.1|Name=mRNA_C-tenellus_contig9665.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=330bp|location=Sequence derived from alignment at C-tenellus_contig9665:3730..5835+ (Choristocarpus tenellus KU2346)
ATGCCGCGGCTGTTGGACCCTGATCGGCTGCAGAAAGAGATCGATGCCCA
GAAGAAGCGTGCGGAGGCGCTGGCACACCTCAGTAAGCACAGTTGTGGTC
CCAGCGAGTATGAGAGGAATGTGGAGACCAAGGGACTGGACCAGGCAGAG
GCCGAGAAGGGAATGGGGGGGCCTAAGCTTGGAGACAACACCCTTGAGGC
TGTGACAGTGAGGAAGGCCCAGCAGTCATACAAAGAACTCTGCGCAAAGG
GGGCTCTCCTGCAGCAACAGTCACAACTCCGCGACGGTTTGCAGGAGAAG
GTCACAAAGGGGGGGGGCAAGAGTGCCGGG