mRNA_C-tenellus_contig9654.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9654.2.1
Unique NamemRNA_C-tenellus_contig9654.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9654.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9654contigC-tenellus_contig9654:2747..3261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size515
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790193.9902961-CDS-C-tenellus_contig9654:2746..31421680790193.9902961-CDS-C-tenellus_contig9654:2746..3142Choristocarpus tenellus KU2346CDSC-tenellus_contig9654 2747..3142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790194.0004575-UTR-C-tenellus_contig9654:3142..32611680790194.0004575-UTR-C-tenellus_contig9654:3142..3261Choristocarpus tenellus KU2346UTRC-tenellus_contig9654 3143..3261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9654.2.1prot_C-tenellus_contig9654.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9654 2747..3142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9654.2.1

>prot_C-tenellus_contig9654.2.1 ID=prot_C-tenellus_contig9654.2.1|Name=mRNA_C-tenellus_contig9654.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=132bp
MLGDLPSVGPGSSVDTIGIGKGCVSLNEVDKGGKVIREETPAVVSMSAGV
TSTINDADSKILVSTADQPPPELEVLSPRGPRGPLVASNTVGATGASKSP
VVFATAVSTAGWGGGGISLEKESGGGAAIPVP
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mRNA from alignment at C-tenellus_contig9654:2747..3261-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9654.2.1 ID=mRNA_C-tenellus_contig9654.2.1|Name=mRNA_C-tenellus_contig9654.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=515bp|location=Sequence derived from alignment at C-tenellus_contig9654:2747..3261- (Choristocarpus tenellus KU2346)
CTCAAGGGGTGAGGAGGGGGGAAAGAAGGATATTAATTAGGATCCCCAAC
AAAAAAAATCTGCACTAGGGAGAGGAGGACGTGGTGGGGGGGGGGAATTT
ACGCTTAGCTGGTGCTGTCATGTTAGGTGACTTGCCCTCAGTTGGGCCTG
GGTCATCTGTTGACACTATAGGTATTGGTAAAGGATGTGTCAGTTTGAAC
GAGGTAGATAAGGGAGGAAAGGTGATCAGGGAAGAAACACCTGCTGTTGT
GTCAATGTCAGCTGGAGTGACAAGCACCATAAATGATGCTGATTCTAAGA
TATTGGTTTCAACAGCAGACCAACCTCCACCTGAGTTGGAGGTTCTTAGC
CCCCGGGGGCCAAGGGGACCTCTGGTGGCAAGCAACACTGTTGGTGCAAC
TGGTGCAAGCAAGTCTCCTGTTGTATTTGCCACTGCTGTTTCTACTGCTG
GTTGGGGGGGGGGAGGTATTTCTCTGGAGAAGGAAAGTGGTGGTGGTGCT
GCTATCCCAGTGCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig9654:2747..3261-

>mRNA_C-tenellus_contig9654.2.1 ID=mRNA_C-tenellus_contig9654.2.1|Name=mRNA_C-tenellus_contig9654.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=396bp|location=Sequence derived from alignment at C-tenellus_contig9654:2747..3261- (Choristocarpus tenellus KU2346)
ATGTTAGGTGACTTGCCCTCAGTTGGGCCTGGGTCATCTGTTGACACTAT
AGGTATTGGTAAAGGATGTGTCAGTTTGAACGAGGTAGATAAGGGAGGAA
AGGTGATCAGGGAAGAAACACCTGCTGTTGTGTCAATGTCAGCTGGAGTG
ACAAGCACCATAAATGATGCTGATTCTAAGATATTGGTTTCAACAGCAGA
CCAACCTCCACCTGAGTTGGAGGTTCTTAGCCCCCGGGGGCCAAGGGGAC
CTCTGGTGGCAAGCAACACTGTTGGTGCAACTGGTGCAAGCAAGTCTCCT
GTTGTATTTGCCACTGCTGTTTCTACTGCTGGTTGGGGGGGGGGAGGTAT
TTCTCTGGAGAAGGAAAGTGGTGGTGGTGCTGCTATCCCAGTGCCT
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