mRNA_C-tenellus_contig9643.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9643.1.1
Unique NamemRNA_C-tenellus_contig9643.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9643.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9643contigC-tenellus_contig9643:119..3419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIX0
PFAMsAnk,Ank_2,Ion_trans,NACHT,Pkinase
Model size709
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.74e-06
EggNOG OGsCOG0666@1|root,KOG0510@2759|Eukaryota
Descriptiontemperature-gated cation channel activity
Cds size609
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790193.7658274-CDS-C-tenellus_contig9643:118..2501680790193.7658274-CDS-C-tenellus_contig9643:118..250Choristocarpus tenellus KU2346CDSC-tenellus_contig9643 119..250 -
1680790193.77659-CDS-C-tenellus_contig9643:2077..22541680790193.77659-CDS-C-tenellus_contig9643:2077..2254Choristocarpus tenellus KU2346CDSC-tenellus_contig9643 2078..2254 -
1680790193.7906344-CDS-C-tenellus_contig9643:3019..33191680790193.7906344-CDS-C-tenellus_contig9643:3019..3319Choristocarpus tenellus KU2346CDSC-tenellus_contig9643 3020..3319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790193.799595-UTR-C-tenellus_contig9643:3319..34191680790193.799595-UTR-C-tenellus_contig9643:3319..3419Choristocarpus tenellus KU2346UTRC-tenellus_contig9643 3320..3419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9643.1.1prot_C-tenellus_contig9643.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9643 119..3319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9643.1.1

>prot_C-tenellus_contig9643.1.1 ID=prot_C-tenellus_contig9643.1.1|Name=mRNA_C-tenellus_contig9643.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=203bp
MSIRPRGLEVMPWETTTSLDGLWEQDPQPGSHGDIKGDVVVQVSMVIGLS
WGRRNRFMVLEHSTVLVYATEESWEIHDEPLEAITLSEDATVESRYQGEE
QFLHLISPERGTITFTSAAGGIRVGQWLLELRRAIRRLGGEPFSVEGMEG
GSHPQVGEKELFDLLSGVGNGDVDGGGEGVEAAERSGQILSSPTGGVGIK
IID
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mRNA from alignment at C-tenellus_contig9643:119..3419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9643.1.1 ID=mRNA_C-tenellus_contig9643.1.1|Name=mRNA_C-tenellus_contig9643.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3301bp|location=Sequence derived from alignment at C-tenellus_contig9643:119..3419- (Choristocarpus tenellus KU2346)
TACTAATATACATACAATCCACGCCAATTCTAGTAAGGAGCGATTGGTTT
AGTCTCAAATTATACCGTATTGACATTAGTTATACTTTCCTAAGGCAGAG
ATGTCTATCAGGCCTCGTGGACTCGAGGTTATGCCGTGGGAGACGACAAC
CAGTCTAGACGGTCTTTGGGAGCAAGACCCACAGCCTGGTAGTCATGGCG
ATATCAAAGGCGATGTGGTGGTGCAGGTTTCCATGGTGATAGGCCTGTCT
TGGGGCAGACGGAACAGGTTTATGGTGCTCGAACATTCAACGGTGCTGGT
GTATGCCACCGAGGAGTCATGGGAGATTCACGATGAGCCTCTTGAGGCGA
TAACCTTATCCGAGGACGCCACGGTAGAATCCCGGTATCAAGGCGAAGAG
GTGTGCTTATCCTTGGGTCGAGGAAGGGGGATTGGTAATACAGACCGAGC
ATTATTAGACTCCCTTTGACTGTTTTACGTTGGTTGCGAATCAGTGATCT
TTACTTCTTCCCCAACTTCCTTTTATGCCGCCTTGCTGTCATGATGATAT
GCTATATCGTTTGTTCATAAACTGTGGCAACCTAGTGATACGTACTTGAG
ATCGTTCCGTTCCAATACCTCCATACCGACATCGCGGTAATCAGTAAACT
ACTATTGCTTGATCAACTCTATAGTTTGGGTAGGGTATGCTGTAAATGCC
TATATTGGGAATGTTATTTGCAAGGGTTTTTTTACCAGCCTTGATATGTT
TATGTTGACCAAGTAACTTAGGTGCGTGTGTCCGATTTCGGCGGGAAAGC
AGACCTTCAAGACAGTATGTGGTACCGTCGATTCTTTAAATGTTTCCTCG
TTTATGTTAATAAAAAATTGGGGGTGAGCGAAAAGGCTCACAGCCTACCT
ACACCTCGATACCCATTGTGATAATCTACTACTGTTTTGCCAATCTGAAT
TCCTGGATTTCATATTTTGAATATTTCATCTTGGAGCGCATATACTCCTT
GTAAAGGAATACGAGATAGGTGGCTGATTTGTATCGGCTCATTAGGGCAA
GCTGGCAATTGGAAAACAGAGCAATGAAATTTTCAACTCAAAATCGATCT
TCCTCCATGCTGGGTTGCTCCCTGCGCCCCCCCCGAAATCCATGCACTTC
GTTTCCCTTTCGAAGCAATTCCTACACCTAATCAGCCCTGAGCGTGGTAC
AATTACCTTCACGAGCGCTGCCGGGGGGATAAGAGTGGGGCAGTGGCTGC
TAGAATTGCGGCGAGCGATCAGGAGACTGGGGGGAGAGCCCTTTTCTGTG
GAAGGAATGGAGGGGGGATCACATCCACAAGTTGGAGAAAAGGTGAATTG
CTGTCTGCGATAACAACGTACAAATGATACTATTTTGAAATAGGAAAATA
TATTGCAGGTAACATGCCTGACTGGTGACATAAACATAACCATAAAAAAT
CGATTATAGTCGACACTTGGTGTTTATGGAGCATCGGATGAGACGGAATA
GTTACATCGCTAGGTGTGTGAAGGATGTAGTGGGCAGAGTAGGTTCATGC
CAGATGGTAAGCGCATGTCAGTGAAATGAGGTTAGGGTTAGGGTTGAAAT
CTCCGGAACATGATGTCGAGTTTGCTTGCAACCACTGTTTGTGTGACATG
CGACGTTTACCCCCTCCTGTATTGAGGGTTGAGGAGAAGGAGCAGGTGTT
GTGTGTGTTGGAGTGTGGAAACTCTTGTAACAAAAGTGTGCTATAGACGA
TACTTTCTACTGCTTCGTGGTTGTGGGACTCCTGGGCCTGTTTTCCTGGC
CACTCTCTGCCGTGCTAATGGGGAGGCAACATGTACACTACAGAGCAATG
CTGTTTTTGACCACCTAATTCCCAAGTCCTTTCTCATGGAGGTACCACAT
CAATACCGTCGCTGTTGTAGGATTATTTTTTAAAGAATGTTTCCCCTCTA
GTTTTTTTCCATGAGATGGGAGAGATGAAAGTGAAAAACGCTACAATGGT
AACTGTCAAAGATGGACACAGGCACCAGGACAAGGGCAAACGTTAACCAA
GTTGATTGCATTCTGTGCTCTGGCAGTGTAAATTTCGTCCCTTTATCCTC
TTTCATGTGTCCGTTGAATTGGATACCGATTTACTGATGTTATCATTGTG
TCCTCCCCACCCCTCCCCCCCAACTTAAGCTTCAAATTTTTGACACTCAC
ATTGTTGTGAGAAGTCCCCGCTCAATATTTCTTGAAAAATGTAAATTAGG
GTTAGGGGAAGGGGGTAGTGTGTATGTGTGTGTGTGTTGTGGTGTGTCTA
TGGCATGATGTAGTGCGATTTTGAATGGGGTTACCCTCCTGTGATGCTGG
GATAGTGTCTACCAAATTCTGTGTAAAATACGATGTGAACCTGGATGGAA
GACCCCCACACGATGTCAATTCCTATCTTATTCAGTGCTTACATATAGCA
AGTCAATTCCCATCTTTTAATCAGGAGACAACAAGAGATATCGATATGGT
TGGAGGGACTGCACAGGAGACTTGAAGTTTTTTTTTGCTTTAGTAGAAGG
AGATGAGCTAATTTTTGTGCTTTTTTTTTCTTCCAGACCATTTCGTGGCT
GGTTTGTGCACATGGTGAGACATTCCACTCACCTTTCTGTACACATTTAC
ACAGTGGCAGTGGCAGTTGCCCTTCAGATGGGAGTATTGGATTCTCAATG
TTCCTACTCTTGATGTTGTATCTTTTTAACACTGTAACTGTAAAGGAAAA
AATAGAAGAAGAGTCTCGCACGCACGTTGTCCAACTTGTGCCTGTGTAAA
GTAGGAAGTATTTGATGGACCTGGAAGAAAAATCTAAGAAATTGATTCTA
CAGTAGTAAGTTTGTGATTTTCGCGACAGAAGAGTGTAAAACCTCTCCCT
TTCTAATGTCGACGTTTCAGTGCAAGAACAGCCGGTGATACCTAGAGTTG
CTCGTTTCAATTAAAAAAAATAATAGTAATAATCGAAAAAAAAAGAAGAT
AGATTAAAAAAAAAAAGTAATCCAGACACAGCGATGATTTTTTTTGTTTG
TGTGCCTACTCCCCCGATAGTGTAGAAATTAATTAAAAATCATCTATTTT
CTTTTACTTTTATTTATCTCCACGGTTCTCTTCTTCAACCAACCCGAATT
TTACCCACCTACGAACCAGGAGTTGTTCGACCTACTATCAGGCGTTGGCA
ATGGTGATGTGGACGGAGGGGGGGAGGGGGTGGAGGCAGCAGAAAGGTCG
GGGCAGATATTGTCGTCCCCCACCGGTGGAGTTGGGATCAAAATTATTGA
T
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Coding sequence (CDS) from alignment at C-tenellus_contig9643:119..3419-

>mRNA_C-tenellus_contig9643.1.1 ID=mRNA_C-tenellus_contig9643.1.1|Name=mRNA_C-tenellus_contig9643.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=609bp|location=Sequence derived from alignment at C-tenellus_contig9643:119..3419- (Choristocarpus tenellus KU2346)
ATGTCTATCAGGCCTCGTGGACTCGAGGTTATGCCGTGGGAGACGACAAC
CAGTCTAGACGGTCTTTGGGAGCAAGACCCACAGCCTGGTAGTCATGGCG
ATATCAAAGGCGATGTGGTGGTGCAGGTTTCCATGGTGATAGGCCTGTCT
TGGGGCAGACGGAACAGGTTTATGGTGCTCGAACATTCAACGGTGCTGGT
GTATGCCACCGAGGAGTCATGGGAGATTCACGATGAGCCTCTTGAGGCGA
TAACCTTATCCGAGGACGCCACGGTAGAATCCCGGTATCAAGGCGAAGAG
CAATTCCTACACCTAATCAGCCCTGAGCGTGGTACAATTACCTTCACGAG
CGCTGCCGGGGGGATAAGAGTGGGGCAGTGGCTGCTAGAATTGCGGCGAG
CGATCAGGAGACTGGGGGGAGAGCCCTTTTCTGTGGAAGGAATGGAGGGG
GGATCACATCCACAAGTTGGAGAAAAGGAGTTGTTCGACCTACTATCAGG
CGTTGGCAATGGTGATGTGGACGGAGGGGGGGAGGGGGTGGAGGCAGCAG
AAAGGTCGGGGCAGATATTGTCGTCCCCCACCGGTGGAGTTGGGATCAAA
ATTATTGAT
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