mRNA_C-tenellus_contig9609.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9609.1.1
Unique NamemRNA_C-tenellus_contig9609.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A836CBP1_9STRA (ATP binding protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.910e-29
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D ++A+LD MDEDD EKLRERRK Q+++Q  ++QE  ANGHGR  EL DQ  FF A KKS  +A+HFYRPTT RC IVD++MERL  +H+ETR
Sbjct:   30 DERIAKLDQMDEDDFEKLRERRKLQMMKQHVKEQEWRANGHGRCSELSDQGEFFAAAKKSSSMAVHFYRPTTARCAIVDARMERLAPRHVETR 122          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A7S2FZE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.890e-26
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D K+AE+  MDEDD EK+RERRK  +I+  REKQ+ ++NGHGRYMEL DQ  FF+A+K SK L +HFYR TT RC+I+D  ++ L   H ETR
Sbjct:   39 DQKIAEMQTMDEDDFEKIRERRKVAMIKAQREKQKNISNGHGRYMELSDQKEFFQASKDSKQLCVHFYRSTTFRCQILDRHLDILAQTHPETR 131          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A0B2USW7_TOXCA (Thioredoxin domain-containing protein 9-like protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2USW7_TOXCA)

HSP 1 Score: 103 bits (257), Expect = 2.580e-25
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D ++  +D++D DD+E +R  R  +L ++  EKQE L NGHG+Y ELPD+PAFFEATKKS  + +HF+RP+TERCKIVD  + ++  +HLE R
Sbjct:   25 DQQMERMDNLDMDDIESIRRTRMEELKKKQLEKQEWLRNGHGKYEELPDEPAFFEATKKSNRMVVHFFRPSTERCKIVDMHLRKIAPRHLEAR 117          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A0M3J730_ANISI (TXNDC9 protein (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J730_ANISI)

HSP 1 Score: 97.4 bits (241), Expect = 6.200e-24
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D ++ E++ + E DLE LR +R  QL ++  EKQE L NGHG Y ELPD+ AFF+ATKKS  L  HFYR +TERCKIVD  + +L  KHLE R
Sbjct:   24 DQEMEEMEHLGEGDLEALRRKRVEQLKKRQLEKQEWLRNGHGEYEELPDERAFFDATKKSNKLIAHFYRTSTERCKIVDMHLSKLAPKHLEAR 116          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A0M3K1W2_ANISI (TXNDC9 protein (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3K1W2_ANISI)

HSP 1 Score: 97.4 bits (241), Expect = 6.640e-23
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D ++ E++ + E DLE LR +R  QL ++  EKQE L NGHG Y ELPD+ AFF+ATKKS  L  HFYR +TERCKIVD  + +L  KHLE R
Sbjct:   24 DQEMEEMEHLGEGDLEALRRKRVEQLKKRQLEKQEWLRNGHGEYEELPDERAFFDATKKSNKLIAHFYRTSTERCKIVDMHLSKLAPKHLEAR 116          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A7S4FPP3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FPP3_9EUGL)

HSP 1 Score: 95.5 bits (236), Expect = 9.960e-23
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D KL +LD+MD+D+L+++RE R  Q+ +   +K+E + NGHG Y E+ DQ  FF+A KKS  + +HFYRPTT RC++VD  +E LC  H ET+
Sbjct:   41 DEKLQKLDEMDDDELDRMREARLRQMKKAQEKKEEYVRNGHGVYSEISDQREFFDAAKKSSRMIVHFYRPTTWRCEVVDKHLETLCRTHYETK 133          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A0M3IGL4_ASCLU (Thioredoxin domain-containing protein n=3 Tax=Ascaris TaxID=6251 RepID=A0A0M3IGL4_ASCLU)

HSP 1 Score: 96.3 bits (238), Expect = 1.710e-22
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D ++  +D + EDDLE +R RR  ++ ++  EKQE L  GHG Y ELPD+ +FFEATKKS     HF+RP+T+RCKIVD  ++R+ ++H+ETR
Sbjct:   25 DHQMERMDHLGEDDLEAIRRRRMQEIKKKQLEKQEWLLKGHGEYEELPDERSFFEATKKSSRFVAHFFRPSTDRCKIVDMHLKRIASQHMETR 117          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A0N5ASC2_9BILA (Thioredoxin domain-containing protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5ASC2_9BILA)

HSP 1 Score: 95.1 bits (235), Expect = 1.900e-22
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D ++ +L+++DEDDLE +R +R  +L ++  +KQE L NGHG+Y ELPD+ AFF+ATKKS  +  HFY  TTERC+IVD  ++ +  K+L+TR
Sbjct:   24 DEEIGKLENLDEDDLETIRRKRMQELKKKQMQKQEWLINGHGKYEELPDERAFFDATKKSDKVVCHFYLSTTERCRIVDKHLKLIAPKYLQTR 116          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A6V1PIS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PIS8_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 2.090e-22
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D ++ +L+++DEDD EKLR+ R+ +L++Q  E+QE L N HGRY E+ DQ  FF+ATKKSK +  HFYR  T+RC+IVD  +  L  +HLETR
Sbjct:   32 DEEIQKLENLDEDDFEKLRQARRERLMKQQVERQEWLQNDHGRYTEIGDQQQFFDATKKSKRMVAHFYRAATQRCQIVDRHLGDLAPRHLETR 124          
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Match: A0A6T1YKD7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6T1YKD7_9EUGL)

HSP 1 Score: 95.5 bits (236), Expect = 2.220e-22
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    7 DAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELPDQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETR 285
            D KL +LD+MD+D+L+++RE R  Q+ +   +K+E + NGHG Y E+ DQ  FF+A KKS  + +HFYRPTT RC++VD  +E LC  H ET+
Sbjct:   41 DEKLQKLDEMDDDELDRMREARLRQMKKAQEKKEEYVRNGHGVYSEISDQREFFDAAKKSSRMIVHFYRPTTWRCEVVDKHLETLCRTHYETK 133          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9609.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBP1_9STRA7.910e-2962.37ATP binding protein-like protein n=1 Tax=Tribonema... [more]
A0A7S2FZE2_9STRA2.890e-2658.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0B2USW7_TOXCA2.580e-2552.69Thioredoxin domain-containing protein 9-like prote... [more]
A0A0M3J730_ANISI6.200e-2455.91TXNDC9 protein (inferred by orthology to a human p... [more]
A0A0M3K1W2_ANISI6.640e-2355.91TXNDC9 protein (inferred by orthology to a human p... [more]
A0A7S4FPP3_9EUGL9.960e-2349.46Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0M3IGL4_ASCLU1.710e-2250.54Thioredoxin domain-containing protein n=3 Tax=Asca... [more]
A0A0N5ASC2_9BILA1.900e-2250.54Thioredoxin domain-containing protein n=1 Tax=Syph... [more]
A0A6V1PIS8_HETAK2.090e-2252.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6T1YKD7_9EUGL2.220e-2249.46Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9609contigC-tenellus_contig9609:116..1766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDD1
PFAMsPhosducin,Thioredoxin
Model size318
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.32e-22
EggNOG OGsCOG0526@1|root,KOG1672@2759|Eukaryota
Descriptionqueuosine biosynthetic process
Cds size318
COG categoryCO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790191.5696104-CDS-C-tenellus_contig9609:115..2441680790191.5696104-CDS-C-tenellus_contig9609:115..244Choristocarpus tenellus KU2346CDSC-tenellus_contig9609 116..244 -
1680790191.6516767-CDS-C-tenellus_contig9609:686..7671680790191.6516767-CDS-C-tenellus_contig9609:686..767Choristocarpus tenellus KU2346CDSC-tenellus_contig9609 687..767 -
1680790191.6615953-CDS-C-tenellus_contig9609:1658..17661680790191.6615953-CDS-C-tenellus_contig9609:1658..1766Choristocarpus tenellus KU2346CDSC-tenellus_contig9609 1659..1766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9609.1.1prot_C-tenellus_contig9609.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9609 116..1766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9609.1.1

>prot_C-tenellus_contig9609.1.1 ID=prot_C-tenellus_contig9609.1.1|Name=mRNA_C-tenellus_contig9609.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
HQDAKLAELDDMDEDDLEKLRERRKAQLIRQGREKQEQLANGHGRYMELP
DQPAFFEATKKSKWLAIHFYRPTTERCKIVDSKMERLCTKHLETRVRRGA
KNQMR*
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mRNA from alignment at C-tenellus_contig9609:116..1766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9609.1.1 ID=mRNA_C-tenellus_contig9609.1.1|Name=mRNA_C-tenellus_contig9609.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1651bp|location=Sequence derived from alignment at C-tenellus_contig9609:116..1766- (Choristocarpus tenellus KU2346)
CACCAGGATGCTAAACTAGCCGAGCTAGATGACATGGACGAAGATGACCT TGAAAAATTGAGAGAGAGGAGAAAGGCGCAGCTTATTCGGCAGGGGAGAG AGAAACAGGTCAGCTTGTTGTAGTGCAAATTGGACTCAGTGACTCGTTTT TTCTGTTTCAACACGAAGACCTTACTGAAGAGGGAAGAGTACTTTATATA GGATGTGGGGAAGGGAGGGATGGAGGAAGACGTGGAGGAAGAGCAACAGG ACCTCGCACCAAATATCGGTGTTGTAGGGGAGAAGCATGTATCCTTCCCT TTTGTGCTCTCCCTAGGTTTGAATTAGGTCTAAGGTTTCGACTAGGATTT TTCTTAATTGTGGCACAAGTACCTGTAACACTAACGCGAAACCAGGGATC ACAACAAGTATTGGAGGTATGGTTCCTTTTAATGGAATGCTGCTGCTTTT GGCCAAATCTAAAAAAAAATCACTCACCAGAGCATGACACTGTGTACATG GTAGGTCTGGGAGAGGGGGGGGGGGGAAGGGAGAGCTTCCATCTCCACCA ATCCACTCTGTCAAAGAATGCCATTGGAGCGATAAATAGGGCCCATCGCC TTACTCACTACAGATTTTCCAAAGCAGTACATCTACAAGGTACAAGCCAG GTTCACCAGTGCCTACTCTCCACCCCACTCCTCAGCGTTGTTCTCAACGA ATTTCCCACCACTCTGTTACCACCCCACCACAACAGGCACTAGATGCATT CATTCCCAGTGTATTCTTTCTCTTCTTGACACATCTTTCAGCTTTCTTGG GCACAGCTCAGAGGGTGTAAGCTTCTCCCTCCATCCCTACCCCCCATCCT TCTGTTTATGGGGTCTGGTGATCTACTCCTGTTGTTTCCTGACCACACCG TACTCTCGCCTTCGCCCCCAGTCGCCATTCTCAATCCTCACCCCTGGTGT TCCGATGATGTGTGACCCTCTTCCAAAACGCCTCCACCTCCTCGTCTAGG AACAACTCGCAAACGGACACGGTCGCTACATGGAGCTACCAGACCAGCCT GCCTTTTTCGAAGCAACCAAGAAAAGCAAGGTATTTGTTCTGATGAGGAA GAACTATTGATACTATGGGGGGGAGGGGGGGGCTTAAGTGCAAATGAATA AGAATGGACGTGATGCATGTTGCCTGTGCCCACATCACCACGAGTTGACA TTATTCTCTTTTTTTTTAGTGATACTTTTGAACTATGTCGCCAATTTTTA TAGACACACTACAATATCCCTCTTTGTTGATGTTTTGATGTGTAAGTAAT ATGGAACTATTTGGATAGGAAAGCATAGGTAGCTCTGATCTCGGCTCTAT TGCGTTCTTTTTTGTTCACACCTTCTCTCCACCAAAGCAACATTTCTCCT TTTCCTCCTTCCCCTGTTCTCCCCCCCGCCGGCCACCCTCTGTCATTGCT TCTTCGCATTTTGGCAATGCAACTTGGGCCATGTGGAGGGCCACCTCTGA TTCGTCTGGTGTTCAATACCAGTGGTTGGCGATACACTTTTACCGACCAA CGACGGAGAGGTGCAAGATTGTTGATTCCAAGATGGAACGCCTATGTACC AAGCATCTCGAGACAAGGGTGAGAAGAGGGGCAAAAAATCAAATGAGATG A
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Coding sequence (CDS) from alignment at C-tenellus_contig9609:116..1766-

>mRNA_C-tenellus_contig9609.1.1 ID=mRNA_C-tenellus_contig9609.1.1|Name=mRNA_C-tenellus_contig9609.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig9609:116..1766- (Choristocarpus tenellus KU2346)
CACCAGGATGCTAAACTAGCCGAGCTAGATGACATGGACGAAGATGACCT
TGAAAAATTGAGAGAGAGGAGAAAGGCGCAGCTTATTCGGCAGGGGAGAG
AGAAACAGGAACAACTCGCAAACGGACACGGTCGCTACATGGAGCTACCA
GACCAGCCTGCCTTTTTCGAAGCAACCAAGAAAAGCAAGTGGTTGGCGAT
ACACTTTTACCGACCAACGACGGAGAGGTGCAAGATTGTTGATTCCAAGA
TGGAACGCCTATGTACCAAGCATCTCGAGACAAGGGTGAGAAGAGGGGCA
AAAAATCAAATGAGATGA
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