mRNA_C-tenellus_contig9581.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9581.1.1
Unique NamemRNA_C-tenellus_contig9581.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9581.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9581contigC-tenellus_contig9581:2148..2676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size529
Hectar predicted targeting categorysignal peptide
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790187.845256-UTR-C-tenellus_contig9581:2147..23431680790187.845256-UTR-C-tenellus_contig9581:2147..2343Choristocarpus tenellus KU2346UTRC-tenellus_contig9581 2148..2343 +
1680790187.8679261-UTR-C-tenellus_contig9581:2643..26761680790187.8679261-UTR-C-tenellus_contig9581:2643..2676Choristocarpus tenellus KU2346UTRC-tenellus_contig9581 2644..2676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790187.8579912-CDS-C-tenellus_contig9581:2343..26431680790187.8579912-CDS-C-tenellus_contig9581:2343..2643Choristocarpus tenellus KU2346CDSC-tenellus_contig9581 2344..2643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9581.1.1prot_C-tenellus_contig9581.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9581 2344..2643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9581.1.1

>prot_C-tenellus_contig9581.1.1 ID=prot_C-tenellus_contig9581.1.1|Name=mRNA_C-tenellus_contig9581.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=100bp
MPAQGHNTVDHFAESMFLFLLLCSCFIICIHCEISSLVSISPSSIVATSN
ICDFTRVVHEFMLVMFETFLYCSSKYSMVYMKRWNTRISKNQRRLGLLP*
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mRNA from alignment at C-tenellus_contig9581:2148..2676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9581.1.1 ID=mRNA_C-tenellus_contig9581.1.1|Name=mRNA_C-tenellus_contig9581.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=529bp|location=Sequence derived from alignment at C-tenellus_contig9581:2148..2676+ (Choristocarpus tenellus KU2346)
ACTAGAGACATGCAAAGATGTGAGGAATTGATTATCTTAGACCAGAATAT
TATCTTTTCGTGACTATTTTTTTGTTGTACATACCCAGTCAAATCAGGAC
GGACTAGAGAAAGCATGTTGCCCACTCTACTGCTGAGTACATAACAGAGA
AGAGTCCAATGCAGAATTGATAAAAAATGGTCCTTTCCCTCTTACAATGC
CTGCTCAGGGTCATAATACGGTTGACCACTTTGCCGAGAGTATGTTTCTC
TTTCTTCTTTTGTGCAGTTGTTTCATTATTTGCATTCATTGTGAAATTTC
AAGTCTTGTAAGCATTTCTCCCTCCTCAATTGTCGCCACCTCCAATATTT
GTGATTTTACAAGAGTTGTGCACGAGTTTATGCTAGTTATGTTTGAAACC
TTTTTGTACTGCTCCTCAAAATATTCTATGGTGTACATGAAAAGGTGGAA
TACACGTATTTCCAAGAACCAAAGGAGGTTGGGATTACTTCCTTAATGTT
GAGGTTGTACTGAAGCATGGAAATGTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9581:2148..2676+

>mRNA_C-tenellus_contig9581.1.1 ID=mRNA_C-tenellus_contig9581.1.1|Name=mRNA_C-tenellus_contig9581.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=300bp|location=Sequence derived from alignment at C-tenellus_contig9581:2148..2676+ (Choristocarpus tenellus KU2346)
ATGCCTGCTCAGGGTCATAATACGGTTGACCACTTTGCCGAGAGTATGTT
TCTCTTTCTTCTTTTGTGCAGTTGTTTCATTATTTGCATTCATTGTGAAA
TTTCAAGTCTTGTAAGCATTTCTCCCTCCTCAATTGTCGCCACCTCCAAT
ATTTGTGATTTTACAAGAGTTGTGCACGAGTTTATGCTAGTTATGTTTGA
AACCTTTTTGTACTGCTCCTCAAAATATTCTATGGTGTACATGAAAAGGT
GGAATACACGTATTTCCAAGAACCAAAGGAGGTTGGGATTACTTCCTTAA
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