mRNA_C-tenellus_contig9571.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A6H5JJR2_9PHAE (DNA topoisomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR2_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.960e-70 Identity = 104/135 (77.04%), Postives = 122/135 (90.37%), Query Frame = 1 Query: 4 VIKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFD-CNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 VIKA+NVAEKPSVA+ELA ILGGG +RRRQG +YN IFEFD C+MM QSV++K+TSVTGHLME+EFAEP GK+W ACQP+ELFTAP+++YVK+D +DLE+QL +EARGCQWLVLWLDCDREGENIAYEVIEV Sbjct: 3 VIKAINVAEKPSVAKELANILGGGNSRRRQGRS--QYNPIFEFDNCSMMGQSVNMKITSVTGHLMELEFAEPYGKKWGACQPIELFTAPLIRYVKDDKKDLERQLVDEARGCQWLVLWLDCDREGENIAYEVIEV 135
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A4D8YX91_SALSN (DNA topoisomerase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YX91_SALSN) HSP 1 Score: 162 bits (409), Expect = 4.260e-45 Identity = 75/133 (56.39%), Postives = 102/133 (76.69%), Query Frame = 1 Query: 7 IKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 I+ALNVAEKPSVA+++A IL G R R G YN+IFEFDC + +Q + + TSVTGHLME+EF + ++W++C P++L+ AP+ KYV +D D++K LE EAR CQWL+LWLDCDREGENIA+EV+++ Sbjct: 10 IRALNVAEKPSVAKQVAGILSKGGMRARDGRS--RYNRIFEFDCVVRSQLIQMSFTSVTGHLMELEFDDRY-RKWHSCDPLDLYHAPVKKYVPQDKLDIQKTLEEEARKCQWLILWLDCDREGENIAFEVVDI 139
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A836XYK3_9ROSI (DNA topoisomerase n=2 Tax=Salix TaxID=40685 RepID=A0A836XYK3_9ROSI) HSP 1 Score: 154 bits (389), Expect = 1.930e-44 Identity = 75/133 (56.39%), Postives = 99/133 (74.44%), Query Frame = 1 Query: 7 IKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 IK LNVAEKPSVA+ +A IL Q R R+G YN+IFEF+ ++ Q + +TSVTGHLMEV+F + ++W++C P +L+TAP+ K+V ED D+++ LE EAR C WLVLWLDCDREGENIA+EV+EV Sbjct: 2 IKVLNVAEKPSVAKSVATILSRNQLRVREGRS--RYNKIFEFNYSINGQQCHMLVTSVTGHLMEVDFEDRF-RKWHSCDPADLYTAPVRKHVPEDKLDIKRTLEEEARKCHWLVLWLDCDREGENIAFEVMEV 131
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A835RPK4_VANPL (DNA topoisomerase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RPK4_VANPL) HSP 1 Score: 149 bits (375), Expect = 6.770e-43 Identity = 75/135 (55.56%), Postives = 100/135 (74.07%), Query Frame = 1 Query: 7 IKALNVAEKPSVARELAKILG--GGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 I+ LNVAEKPSVA+ +A+IL GG R RQG F N+IFEF+ + Q + +TSVTGHLME+EF + ++W++C P +L+ AP+ K+V +D D+++ LE EAR CQWLVLWLDCDREGENIA+EV+EV Sbjct: 7 IRVLNVAEKPSVAKSVAEILSRSGGGMRSRQGRSRF--NRIFEFEYCIGGQPCHMLMTSVTGHLMELEFDDRF-RKWHSCDPADLYHAPVRKHVPQDKLDIKRTLEEEARMCQWLVLWLDCDREGENIAFEVVEV 138
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A1S4CAX6_TOBAC (DNA topoisomerase n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CAX6_TOBAC) HSP 1 Score: 152 bits (385), Expect = 1.870e-42 Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = 1 Query: 4 VIKALNVAEKPSVARELAKILG---GGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 VI+ LNVAEKPSVA+ ++ IL GG R R G YN+IFEF+ + NQ + TSVTGHLME+EF + ++W++C P+ L+ AP+ KYV +D D+++ LE EARGCQW++LWLDCDREGENIA+EV+EV Sbjct: 12 VIRVLNVAEKPSVAKAVSGILSRNQGGGMRVRDGRS--RYNKIFEFNYTIRNQPCQMLFTSVTGHLMELEFDDRF-RKWHSCDPLHLYDAPVRKYVPQDKLDIKRTLEEEARGCQWIILWLDCDREGENIAFEVLEV 145
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A328E4P5_9ASTE (DNA topoisomerase n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328E4P5_9ASTE) HSP 1 Score: 158 bits (400), Expect = 2.360e-42 Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 1 Query: 1 MVIKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 M + LNVAEKPSVA+ +A IL Q R R G + YN+IFEF+ N+ NQ + TSVTGHLME+EF E ++W++C PV+L+ AP+ K+V ED D+ + LE E+R CQWL+LWLDCDREGENIA+EV+EV Sbjct: 1 MAVTVLNVAEKPSVAKAVAGILSNNQMRSRNGRSV--YNKIFEFNYNIQNQPCQMLFTSVTGHLMELEFDERY-RKWHSCDPVDLYAAPVRKHVPEDKLDIRRTLEEESRRCQWLILWLDCDREGENIAFEVLEV 132
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A484KCL6_9ASTE (DNA topoisomerase n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KCL6_9ASTE) HSP 1 Score: 158 bits (400), Expect = 2.380e-42 Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 1 Query: 1 MVIKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 M + LNVAEKPSVA+ +A IL Q R R G + YN+IFEF+ N+ NQ + TSVTGHLME+EF E ++W++C PV+L+ AP+ K+V ED D+ + LE E+R CQWL+LWLDCDREGENIA+EV+EV Sbjct: 1 MAVTVLNVAEKPSVAKAVAGILSNNQMRSRNGRSV--YNKIFEFNYNIQNQPCQMLFTSVTGHLMELEFDERY-RKWHSCDPVDLYAAPVRKHVPEDKLDIRRTLEEESRRCQWLILWLDCDREGENIAFEVLEV 132
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A2Z7AKT5_9LAMI (DNA topoisomerase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AKT5_9LAMI) HSP 1 Score: 151 bits (381), Expect = 2.870e-42 Identity = 76/137 (55.47%), Postives = 99/137 (72.26%), Query Frame = 1 Query: 7 IKALNVAEKPSVARELAKILG----GGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 ++ALNVAEKPSVA+ +A IL G R R G F N+IFEF+ + NQ + TSVTGHLME+EF E ++W++C PV+L+ AP+ K+V +D D++K LE EAR CQWL+LWLDCDREGENIA+EV+EV Sbjct: 1 MRALNVAEKPSVAKAVAGILSKNPVSGGLRVRDGRSRF--NRIFEFNYTIQNQQFQMAFTSVTGHLMEIEF-EDRYRKWHSCDPVDLYHAPVRKHVPQDKSDIQKTLEEEARTCQWLILWLDCDREGENIAFEVVEV 134
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: UPI00053F3E02 (DNA topoisomerase 3-alpha n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3E02) HSP 1 Score: 157 bits (398), Expect = 4.390e-42 Identity = 76/133 (57.14%), Postives = 100/133 (75.19%), Query Frame = 1 Query: 7 IKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 I+ALNVAEKPSVA+ ++ IL G QAR R+G YN+IFEFD + Q + + TSVTGHLME+EF + ++W++C PVEL+ AP+ K V +D D+++ L+ E R CQWL+LWLDCDREGENIA+EVIEV Sbjct: 7 IRALNVAEKPSVAKAVSGILSGNQARVREGRS--RYNKIFEFDYTIRGQPIHMLFTSVTGHLMELEFDDRY-RKWHSCDPVELYQAPVRKGVPQDKSDIKRTLQQEIRSCQWLILWLDCDREGENIAFEVIEV 136
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Match: A0A5N5K7Y2_9ROSI (DNA topoisomerase n=4 Tax=Salix TaxID=40685 RepID=A0A5N5K7Y2_9ROSI) HSP 1 Score: 152 bits (384), Expect = 5.490e-42 Identity = 74/133 (55.64%), Postives = 99/133 (74.44%), Query Frame = 1 Query: 7 IKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFDCNMMNQSVSVKLTSVTGHLMEVEFAEPLGKRWNACQPVELFTAPIVKYVKEDNRDLEKQLENEARGCQWLVLWLDCDREGENIAYEVIEV 405 IK LNVAEKPSVA+ +A IL Q R R+G +N+IFEF+ ++ Q + +TSVTGHLMEV+F + ++W++C P +L+TAP+ K+V ED D+++ LE EAR C WLVLWLDCDREGENIA+EV+EV Sbjct: 2 IKVLNVAEKPSVAKSVATILSRNQLRVREGRS--RHNKIFEFNYSINGQQCHMLVTSVTGHLMEVDFEDRF-RKWHSCDPADLYTAPVRKHVPEDKLDIKRTLEEEARKCHWLVLWLDCDREGENIAFEVMEV 131 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9571.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9571.2.1 >prot_C-tenellus_contig9571.2.1 ID=prot_C-tenellus_contig9571.2.1|Name=mRNA_C-tenellus_contig9571.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=135bp MVIKALNVAEKPSVARELAKILGGGQARRRQGHILFEYNQIFEFDCNMMNback to top mRNA from alignment at C-tenellus_contig9571:3210..5822+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9571.2.1 ID=mRNA_C-tenellus_contig9571.2.1|Name=mRNA_C-tenellus_contig9571.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2613bp|location=Sequence derived from alignment at C-tenellus_contig9571:3210..5822+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9571:3210..5822+ >mRNA_C-tenellus_contig9571.2.1 ID=mRNA_C-tenellus_contig9571.2.1|Name=mRNA_C-tenellus_contig9571.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=405bp|location=Sequence derived from alignment at C-tenellus_contig9571:3210..5822+ (Choristocarpus tenellus KU2346)back to top |