mRNA_C-tenellus_contig9513.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 347 bits (889), Expect = 2.830e-105 Identity = 201/461 (43.60%), Postives = 279/461 (60.52%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYVGDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFGGFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQHTTVLMN 2771 KTNK G++ ++KARLVA+GF QI +DY + +P PS S+K++LA+A ++ +L WDVKQAF A + E++F+ L GCG+ S K+V+ +A+YG KQ+ R++ L + GFEQC+ADPCV R + D VV D +LVAG D + + + + F +D G+ ++ GC + RD A T+ ISQT YI S+ RF + S+P S +D R++ + REA+GS+MW S +R DI+ AVR VA ++ P HW+A+ ILAYL +G+++ S L+ Y DASYA D DRRSV+G A T G IS SK Q +V+LSSTE+EYIA G +E LF+R+VL I P+ I + EDN GA LV+N SS R+KHIDVR+HF+R LFR G+I + FV T Q AD+LTK L + H LMN Sbjct: 54 KTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTS--SIP--ASPGVDIGPKRDDESGGE--WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSG-LGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 355 bits (911), Expect = 4.090e-104 Identity = 201/457 (43.98%), Postives = 288/457 (63.02%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYV-GDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFG-GFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQH 2753 K ++ G++V+ KARLVAKGF+Q G+DY +TF+PT + S ++V+ALA + EL WD++QAF+Q+++ E+F+ L GCG SGK+VRL K+LYG KQASR F V L++ GFEQ +DPCVLR++ GD VV +V A HVDD+L AG + V + + + ++ G++ +++GC RDR A T+ +SQ YI+SV +RF + + S+P S D E+ + D +RE VGSLMW + TR DI+NAVR VA +S PK +HW+A + IL YL + L F S + Y DA +A NDRRSV+G + A + W+SK Q+ V+ S++E+EY+A+G +E LF+ +L+ ++P R ID+ EDN+GA L N SS+R+KHIDVRHHFLR+L +G I V V ++ Q AD+LTK LP F H Sbjct: 502 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMV-AIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGD--VPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 951
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 355 bits (911), Expect = 6.170e-102 Identity = 201/457 (43.98%), Postives = 288/457 (63.02%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYV-GDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFG-GFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQH 2753 K ++ G++V+ KARLVAKGF+Q G+DY +TF+PT + S ++V+ALA + EL WD++QAF+Q+++ E+F+ L GCG SGK+VRL K+LYG KQASR F V L++ GFEQ +DPCVLR++ GD VV +V A HVDD+L AG + V + + + ++ G++ +++GC RDR A T+ +SQ YI+SV +RF + + S+P S D E+ + D +RE VGSLMW + TR DI+NAVR VA +S PK +HW+A + IL YL + L F S + Y DA +A NDRRSV+G + A + W+SK Q+ V+ S++E+EY+A+G +E LF+ +L+ ++P R ID+ EDN+GA L N SS+R+KHIDVRHHFLR+L +G I V V ++ Q AD+LTK LP F H Sbjct: 769 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMV-AIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGD--VPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 1218
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 353 bits (906), Expect = 1.060e-101 Identity = 200/457 (43.76%), Postives = 288/457 (63.02%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYV-GDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFG-GFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQH 2753 K ++ G++V+ KARLVAKGF+Q G+DY +TF+PT + S ++V+ALA + EL WD++QAF+Q+++ E+F+ + GCG S K+VRL K+LYG KQASR F V L++ GFEQ +DPCVL ++ GD VV +V A HVDD+L AG + V + + + ++ G++++++GCE RDR A T+ ISQ YI+SV +RF + + S+P L+ N D+S E + +RE VGSLMW + TR DI+NAVR VA +S PK +HW+A + IL YL + L F S + Y DA +A DRRSV+G + A + W+S+ Q+ V+ S++ESEY+A+G +E LF+ +L+ ++P R ID+ EDN+GA L N SS+R+KHIDVRHHFLR+L +G I V V + Q AD+LTK LP F H Sbjct: 733 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMV-AIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLN-NDDRSLMEEEGAG---DVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVH 1182
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 355 bits (911), Expect = 2.640e-101 Identity = 200/457 (43.76%), Postives = 289/457 (63.24%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYV-GDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFG-GFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQH 2753 K ++ G++V+ KARLVAKGF+Q G+DY +TF+PT + S ++V+ALA + EL WD++QAF+Q+++ E+F+ + GCG S K+VRL K+LYG KQASR F V L++ GFEQ +DPCVLR++ GD VV +V A HVDD+L AG + V + + + ++ G++++++GCE RDR A T+ ISQ YI+SV +RF + + S+P L+ N D+S E + +RE VGSLMW + TR DI+NAVR VA +S PK +HW+A + IL YL + L F S + Y DA +A DRRSV+G + A + W+S+ Q+ V+ S++E+EY+A+G +E LF+ +L+ ++P R ID+ EDN+GA L N SS+R+KHIDVRHHFLR+L +G I V V + Q AD+LTK LP F H Sbjct: 943 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMV-AIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLN-NDDRSLMEEEGAG---DVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVH 1392
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 340 bits (873), Expect = 4.670e-101 Identity = 193/449 (42.98%), Postives = 278/449 (61.92%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYVGDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFGGFST-ECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLP 2732 K ++ G++V+ KARLVAKGF+Q G+DY +TF+PT + S+++V+ALA + EL D++QAF Q+ + E+ + L GC SGKIVRL K+LYG KQASR F V L + GFEQ +DPCVLR++ V +IA HVDD+L AG + + + + ++ G++ +++GC SRDR A T+ ISQ YI+SV +RF + + S+P S D E+ + D +RE VG LMW + TR + +NAVR VA +S PK + W+A + IL+YL + L + +T + Y DA +A DRRSV+G + AG +SW S Q+ V+LS++E+EYIA+G +E LF+ +L++++P R ID+FEDN+GA L N SS+R+KHIDVRHHFLR+L +G I V V + Q AD+LTK LP Sbjct: 267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNI--CRTSSIP--ASPANDSRSVMEDEEAGD--VPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALP 709
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE) HSP 1 Score: 343 bits (881), Expect = 8.280e-101 Identity = 197/459 (42.92%), Postives = 283/459 (61.66%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYV-GDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRM--DGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFG-GFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQH 2753 K ++ G++V+ KARLVAKGF+Q G+DY +TF+PT + S ++V+ALA + EL WD++QAF+Q+++ E+F+ L GCG SGK+VRL K+LY KQ SR F N V L++ GFEQ +DPCVLR++ GD VV +V A HVDD+L AG + V + + + ++ G++++++GCE RDR A T ISQ YI+SV +F + + S D +++L + ++ P +RE VGSLMW + TR DI A R VA S NPK W+A + IL YL + L F S + Y DA +A NDRRSV+G + A + W+SK Q+ V+ S++E+EY+A+G +E LF+ +L+ ++P R ID+ EDN+GA L N SS+R+KHIDVRHHFLR+L +G I V V ++ Q AD+LTK LP F H Sbjct: 36 KADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMV-AIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNVCSTSSTPASPANDNNRSLKEDEGAKDVP-------FREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 486
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 328 bits (840), Expect = 2.740e-99 Identity = 183/445 (41.12%), Postives = 264/445 (59.33%), Query Frame = 3 Query: 1449 RQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYVGDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTL---YREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFGGFSTE-CELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQHTTVLMN 2771 R+ GL TF P KM+ ALA + + +L +DV+QAF+++++ E++++ L GCG SG IV+L K+LYG +QASR+++ + L GFEQC AD CV R + DG V +++ HVDD+ G+ + + + + +++ G++ +Y GC R++ +TISQ + + + + G RSVP SG + + DE +RE VGSLMW + TR DIANAVR VA Y ++PK+ HW A IL Y G+SF + E L YADA +A DRRSV+GG +T GGA+SW S+ Q+ V LS+TE+EY+ALG V +E+LFLR + + + PQ CI +FEDN GA +L +N S++ +KHIDVRHHFLR+L + EI V+ V + QRAD LTK+LP F H +MN Sbjct: 31 REFYGLLEAGTFTPA------KMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGG--RSVPMS-------SGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMN 460
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 333 bits (853), Expect = 3.020e-99 Identity = 190/471 (40.34%), Postives = 279/471 (59.24%), Query Frame = 3 Query: 1389 KTNKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKC----GFEQCRADPCVLRYVGDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSK-NLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSF-----GGFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQHTTVLMN 2771 K + FG + KARLVA+G Q E +D+ D +APT + S++M+ ALA + D EL +D+ QAF++A ++E IF+ + +GCG SGKIV+L K+LYG +QASRE W +L+KC GFEQC AD C+ R+V G V +++ HVDD+ G + + E ++ G++++Y GC DR A +TISQ Y + + +R+ ++ +P + D HP +R VGSL+W +++TR DIAN+VR VA YS PK+ HW+A L Y S G+SF GFS L + A YA DRRS +GG + AGGAI+W SK Q+ V LS+T++EY+A+ + +E+LFLR V + + P+ R CI L+EDN+GA ++ ++ S++ +KHIDVRHHFLR L + E+ ++ V + Q AD LTK LP + H +MN Sbjct: 160 KVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASRE----WYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHP-------FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFS----LITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKALPEREVVFHRDYVMN 615
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE) HSP 1 Score: 328 bits (842), Expect = 3.880e-98 Identity = 185/460 (40.22%), Postives = 269/460 (58.48%), Query Frame = 3 Query: 1395 NKFGEVVRYKARLVAKGFRQIEGLDYQDTFAPTPSPESLKMVLALAADRDWELKFWDVKQAFIQADISEEIFVHLCDGCGKWSGKIVRLIKALYGTKQASREFNNLWVHVLEKCGFEQCRADPCVLRYVGDGVVCVVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRTAQTVTISQTRYIKSVCQRFRMDGAKKRSVPRDLSKNLDKSGNRENHPSVDENTLYREAVGSLMWASVMTRLDIANAVREVA*YSSNPKVTHWRAVECILAYLNTCPSVGLSFG-GFSTECELSAYADASYAGDWNDRRSVTGGAITFAGGAISWMSKVQRVVALSSTESEYIALGSVAQELLFLRSVLKIIQPQFPRRCIDLFEDNDGACKLVRNATSSTRTKHIDVRHHFLRDLFRKGEIRVVFVGTDNQRADVLTKNLPVQGFRQHTTVLMN 2771 ++FG VR KARLVA+GF Q EG+D+ +TF+P PS S++++ A+A DW+L +D +QAF+Q+++ E +F+ L GCG SGK+VRL ++LYG KQASR +++ + ++ GFE C AD CV+R + GVV +V+ HVDD+ G + I + G++ +Y GC SRD TVTISQ + + +F + K+ P + L++ E P VDE +R VG LMW + TR DI NAVR VA YS PK HW A +L Y+ G++F G + + D+ +A DRRSV+G + FAG + ++ + Q+ V LSSTE+EY+A+ +E +FLR + K I P C ++EDN GA L N ++ +KHID+RHHF+R+ +GE +VV V +D QRAD LTK LP + F H +MN Sbjct: 121 DEFGYAVRAKARLVARGFAQREGVDFFETFSPYPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKE--TPMVVGLKLEQYDADE--PDVDEP--FRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMN 574 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9513.2.1 >prot_C-tenellus_contig9513.2.1 ID=prot_C-tenellus_contig9513.2.1|Name=mRNA_C-tenellus_contig9513.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=327bp MEMGAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEback to top mRNA from alignment at C-tenellus_contig9513:2280..5219- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9513.2.1 ID=mRNA_C-tenellus_contig9513.2.1|Name=mRNA_C-tenellus_contig9513.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2940bp|location=Sequence derived from alignment at C-tenellus_contig9513:2280..5219- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9513:2280..5219- >mRNA_C-tenellus_contig9513.2.1 ID=mRNA_C-tenellus_contig9513.2.1|Name=mRNA_C-tenellus_contig9513.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=981bp|location=Sequence derived from alignment at C-tenellus_contig9513:2280..5219- (Choristocarpus tenellus KU2346)back to top |