mRNA_C-tenellus_contig947.5.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 147 bits (372), Expect = 2.430e-36 Identity = 107/302 (35.43%), Postives = 151/302 (50.00%), Query Frame = 2 Query: 17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDC-AMKKLDLFIGEHLKVKR---------EEMEKICSKRQGELGVENMK-----RVQP-PADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWE-------GDAEDAAVTACLKDAVELNQTEGTFLLSCGILYLDPSWLN 853 LE+++WDF H +Y S FLT GAL+LLVVD++KF + G VY WLD LLC+VPGS+VLVV TH D D E A++ L + EHL+ KR EE E + R G + M R +P P L++ G ++VS RS G + V +KI E+ +FP+V K++P W R A+M ALH G DP +A G V EG+ ++ E A W +E + G+ + K A+ L G+ L CG+++L+PSW+N Sbjct: 238 LEVLIWDFAGHDDYHSTHQMFLTDGALHLLVVDLHKFDRDVLSRGGGVYIWLDSLLCRVPGSAVLVVATHADAFGDDHERSAGALEALKAAVTEHLETKRQDWLAAKRLEERELMSQARPASTGRDFMSESPADRSKPAPPSLHLCGFISVSGRSLDG-LSTVGEKIWEVANEPA--------VFPSVRKIVPGIWRRVWAVMDALHVGADPDSAVRLEGPVVTI--EGRDKHEFVTEEQAFEVWSHADRESATQLEAAGHFGEQLRLVSSRHFKAALNLRHMGGSVLAVCGLIHLNPSWIN 528
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 141 bits (356), Expect = 3.280e-34 Identity = 100/310 (32.26%), Postives = 152/310 (49.03%), Query Frame = 2 Query: 2 NGEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCA-MKKLDLFIGEHLKVKREEMEKICSKRQGELGVENMK------------------RVQPPADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKD-------AVELNQTEGTFLLSCGILYLDPSWLN 853 N + +E+++WDF H +Y S FLT+G+L++LVVD++KF + S G VY WLD LLC+VPGS VLVV TH D + E A + KL+ I +HLK KREE + ++RQ E + + PP L + G + S RS + + +KI E+ LFP + + +P W R A+M AL +G DP A G ++ EG+ ++ E A W G+ E E A+ +D A++L Q G+ L +CG+++L+ +W+N Sbjct: 228 NFDPAVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHKFVCDPSSTGDTVYVWLDSLLCRVPGSVVLVVATHADAFGDNRERSAAALSKLEAAINDHLKEKREEWQ--TAQRQAEKAKQTPQDRCGPLASGSTTGYPADHAAAPPPTLQLCGFILGSGRSLED-LSVLGRKIWEIANEA--------SLFPDIHQTVPKSWRRVWAVMDALREGADPQKAVRLDGPLAPV--EGREKREFVTREAAFEAWWGVDGESVAELKAKGPDSQQLKQDSSRLFQAALKLRQMGGSVLAACGLVHLNVAWIN 524
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6H5L6I0_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I0_9PHAE) HSP 1 Score: 135 bits (341), Expect = 2.830e-32 Identity = 103/309 (33.33%), Postives = 152/309 (49.19%), Query Frame = 2 Query: 2 NGEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCA-MKKLDLFIGEHLKVKREEMEKICSKRQGELGVENMK-RVQPPADLYILGVMAVSCR------------SGGGR----MDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKD-------AVELNQTEGTFLLSCGILYLDPSWLN 853 N + +E+++WDF H +Y S FLT+G+L++LVVD++KF + S G VY WLD LLC+VPGS VLVV T+ D + E A + KL+ I EHL+ KR ME ++RQ E + + R PPA G A SG GR + + +KI E+ LFP + + IP W R A+M AL +G DP A G ++ EG+ ++ E+A W G E E A+ +D A++L Q G+ L +CG+++L+ +W+N Sbjct: 123 NFDPPVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHKFVCDPSSTGDTVYVWLDSLLCRVPGSVVLVVATYADAFGDNHERSAAALSKLEAAIHEHLEEKR--MEWQTAQRQAENTKQTPQDRCGPPASGSTTGYPADHAAAPPPTLQLCGFISGSGRSLEDLSVLGRKIWEIAHE--------ESLFPDIHQKIPKSWRRVWAVMDALREGADPQKAVRLDGPLAPV--EGREKREFVTREEAFEAWWGADGESVAELKAKGPDSQHLNQDSQRLFQAALKLRQMGGSVLAACGLVHLNVAWIN 419
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 101 bits (251), Expect = 2.460e-20 Identity = 78/303 (25.74%), Postives = 140/303 (46.20%), Query Frame = 2 Query: 5 GEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDE----VDCAMKKLDLFIGEHLKVKREEMEKICSKRQGELGVENMKRVQPPADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTM---LPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKDAVELNQTEGTFLLSCG---------------ILYLDPSW 847 G L++ +WDF + Y FLT GAL +LVVD+ + + + WLD+L +VPGS VL++GTH D E VDC +K L + ++ +KR E + +G GV++ +R +P + + ++A++ GG A ++ +E V +GV G FP+V +P A A + A+ G+ + +P EV+ G + P++ +A+ R+ + E+ G L A++L++ +G LL+ +++++P+W Sbjct: 104 GNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSEDGHSREDALEQWLDILQARVPGSVVLLMGTHSDSFDSPAECSKRVDCFVKGELLPLYKNFIMKRIGDECKAAADRGHAGVQDNRRYEPLRVVVVKELLALNLSPSGGVTTAELREHIEGVAYGVHDGYS----FPSVNNEVPEPHLLAVATLEAVRRGVSLRGSGGEPAEVARRLNAGTKVGEGHPFVLFPEALSRFLEVAGEKPMFGGKATEGARVFLA-AIKLHEVQGAILLTRADGGGEMEDMASEEHLVIHMNPAW 401
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 5.960e-18 Identity = 78/278 (28.06%), Postives = 126/278 (45.32%), Query Frame = 2 Query: 5 GEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMKKLDLFIGEHLKVKREE--MEKICSKRQGELGVENMKRVQPPADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEV-----SHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKDAVELNQTEGTFLLS 817 G L++ +WDF + Y FLT GAL +LVVDI + + + WLD+L +VPGS VL+VGTH D D DC+ + + +G K RE E + + GV++ +R QP + + ++A++ GG A ++ E V +GV G FP+V +P A A + A+ G + P EV EGQ P++ +A+ + + E++ G A L A+ L++ +G L++ Sbjct: 276 GNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSEDGHSREDALEQWLDILQARVPGSVVLLVGTHSDMF--DSPADCSKRDIMDRVGRECKSARERARQESAGNSDREYAGVQDSRRYQPLRIVVVDELLALNLTPSGGVTTAQLQEHFEGVAYGVHDGYS----FPSVNSEVPEPHLLAVATLEAVRRGATLRGSGGDPAEVVRRLDGEKLDEGQ---PFILFPEALSLFLEVAGEKSLFGGNATEGEQAFLA-AITLHERQGAILVT 543
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 1.060e-11 Identity = 68/238 (28.57%), Postives = 115/238 (48.32%), Query Frame = 2 Query: 17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMKKLDLF---IGEHLKVKREEMEKICSKRQGELG------VENMKRVQPPADLYILGVMAVSCRSGGGR-MDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEG--QTMLPYLHLEDAV 694 L++ +WDF + Y FLT GAL +LVVD+ + +S E L WL++L +VPGS VL+VGTH D ++ +C ++ D F + E + R E + + + ELG ++ R QP + ++A+ S G+ +D +++++ L +G DG FP+V V+P + A A + A+ G D + V+ GEG + ++ +AV Sbjct: 415 LDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTYTEGQSREDALE-QWLEILQARVPGSVVLLVGTHTDLF-AENAAECT-RRTDRFKKDVEEIMTRLRCECDSAKDRVETELGEGHTTDLKGNPRYQPLRVVLKEELLALDLTSSDGQDIDLLQQRLEHLAYNGY----DGYS-FPSVRSVVPEPYLPAIATLEAVRRGADLRGSGRTREAVAQRLGEGDPKKRRSFVRFSEAV 644
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A8K0A9N6_BRALA (MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A9N6_BRALA) HSP 1 Score: 71.6 bits (174), Expect = 2.650e-10 Identity = 54/197 (27.41%), Postives = 92/197 (46.70%), Query Frame = 2 Query: 17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMK----KLDLFIGEHLKVKREEMEKICSKRQGELGVENMKRVQPPAD------------LYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWA 559 ++L+++DFG H Y FLT G+L++L VD+ + E V W+D+L +VPG+ VL+ GTH+D +K +E+ + +LD ++K ++ KI + QG + P A L V +S G +DA+R +I+ ++ + T FP + +V+P WA Sbjct: 326 VKLLVYDFGGHPIYHMTHQLFLTKGSLHILTVDLASYRREAFPAS--VGKWVDILRARVPGTHVLLAGTHVDQIKDAEEIRLKCEDIETQLDQMQQNYVKDLDRQIRKIKKELQGSREESSNSSQDPYAKRLNELKDLKSNPLKFSRVYPLSSAEGLEGVDALRAEILRVL--------EDTSTFPDLRRVLPKTWA 512
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: C3ZG69_BRAFL (Roc domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZG69_BRAFL) HSP 1 Score: 69.3 bits (168), Expect = 1.550e-9 Identity = 51/198 (25.76%), Postives = 96/198 (48.48%), Query Frame = 2 Query: 17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMKKLDLFIGE----HLKVKREEMEKICSKRQGELGVENMKRVQP-------------PADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWA 559 ++L+++DFG H Y FLT G+L++L VD+ ++ E V W+D+L +VPG+ VL+ GTH+D +K +E+ + ++ I + H+K ++ KI + +G + +++ Q L V +S G ++A+R +I+ ++ + T FP + +V+P WA Sbjct: 380 VKLLVYDFGGHPIYHMTHQLFLTKGSLHILTVDLARYRKEAFPTS--VGKWVDILRARVPGTHVLLAGTHVDQIKDAEEIRTKCEDIETQIDQMQQNHVKDLDRQIRKITKELRG-VRSDSLNSTQDGYAKRLTELHDLKSKPLKFSRVFPLSSAEGLQGVNALRAEILRVM--------EDTSAFPDLRRVLPKTWA 566
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A401NP47_SCYTO (Roc domain-containing protein n=5 Tax=Galeoidea TaxID=119195 RepID=A0A401NP47_SCYTO) HSP 1 Score: 68.9 bits (167), Expect = 2.090e-9 Identity = 61/219 (27.85%), Postives = 99/219 (45.21%), Query Frame = 2 Query: 2 NGEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHID-CMKGDDEVDCAMKKLDLFIGEHLKVKR--EEMEKICSKRQGELGVE-NMKRVQPPADLY------------------------ILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASAL 574 + E+ L +++D + YD + PFFL+ GAL +LVV + + + E LV +L LL +VP V VVG H+D C + + E C LD+ L+ KR E M+ + K G LG E +++ P A Y + V+AVSC+ ++ ++ K++ + H +FP + +V+P W R L Sbjct: 431 DAEKNLTFIVYDLAGDQNYDLIQPFFLSPGALYVLVVSLKAYASDRFYE--LVGYFLHLLGARVPHGVVCVVGAHVDQCNEKEVEEKC----LDIHHQIALQEKRDVEVMQAVAEKVDGALGQEFDLRATSPHAPFYGVSDKNLRRKKAQVQYLLNNRLQILSPVIAVSCQEDHIGINRLKDKLLSVAEH--------REIFPNLHRVLPKSWQRLEEL 635
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6P4YQC6_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YQC6_BRABE) HSP 1 Score: 68.6 bits (166), Expect = 2.740e-9 Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2 Query: 17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMK----KLDLFIGEHLKVKREEMEKI-----CSKRQGELGVEN--MKRVQPPADLY-----ILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWA 559 ++L+++DFG H Y FLT G+L++L VD+ + E V W+D+L +VPG+ VL+ GTH+D ++ +E+ + ++DL ++K +M KI ++ + +N KR+ DL V +S G ++A+R +I+ ++ + T FP + +V+P WA Sbjct: 230 VKLLVYDFGGHPVYHMTHQLFLTKGSLHILTVDLASYRRESFPAS--VGKWVDILRARVPGTHVLLAGTHVDQIRDAEEMRMKCEDIENQIDLMQQNYVKDLDRQMRKIKKELQSAREESSDSSQNGYAKRLTELEDLKSKPLKFSQVFPLSSAEGLEGVEALRAEILRVL--------EDTSAFPDLRRVLPKTWA 416 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig947.5.1 >prot_C-tenellus_contig947.5.1 ID=prot_C-tenellus_contig947.5.1|Name=mRNA_C-tenellus_contig947.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=276bp MMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDback to top mRNA from alignment at C-tenellus_contig947:4465..7103- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig947.5.1 ID=mRNA_C-tenellus_contig947.5.1|Name=mRNA_C-tenellus_contig947.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2639bp|location=Sequence derived from alignment at C-tenellus_contig947:4465..7103- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig947:4465..7103- >mRNA_C-tenellus_contig947.5.1 ID=mRNA_C-tenellus_contig947.5.1|Name=mRNA_C-tenellus_contig947.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=828bp|location=Sequence derived from alignment at C-tenellus_contig947:4465..7103- (Choristocarpus tenellus KU2346)back to top |