mRNA_C-tenellus_contig947.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig947.5.1
Unique NamemRNA_C-tenellus_contig947.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.430e-36
Identity = 107/302 (35.43%), Postives = 151/302 (50.00%), Query Frame = 2
Query:   17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDC-AMKKLDLFIGEHLKVKR---------EEMEKICSKRQGELGVENMK-----RVQP-PADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWE-------GDAEDAAVTACLKDAVELNQTEGTFLLSCGILYLDPSWLN 853
            LE+++WDF  H +Y S    FLT GAL+LLVVD++KF  +    G  VY WLD LLC+VPGS+VLVV TH D    D E    A++ L   + EHL+ KR         EE E +   R    G + M      R +P P  L++ G ++VS RS  G +  V +KI E+             +FP+V K++P  W R  A+M ALH G DP +A    G V     EG+    ++  E A   W    +E   +       G+      +   K A+ L    G+ L  CG+++L+PSW+N
Sbjct:  238 LEVLIWDFAGHDDYHSTHQMFLTDGALHLLVVDLHKFDRDVLSRGGGVYIWLDSLLCRVPGSAVLVVATHADAFGDDHERSAGALEALKAAVTEHLETKRQDWLAAKRLEERELMSQARPASTGRDFMSESPADRSKPAPPSLHLCGFISVSGRSLDG-LSTVGEKIWEVANEPA--------VFPSVRKIVPGIWRRVWAVMDALHVGADPDSAVRLEGPVVTI--EGRDKHEFVTEEQAFEVWSHADRESATQLEAAGHFGEQLRLVSSRHFKAALNLRHMGGSVLAVCGLIHLNPSWIN 528          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.280e-34
Identity = 100/310 (32.26%), Postives = 152/310 (49.03%), Query Frame = 2
Query:    2 NGEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCA-MKKLDLFIGEHLKVKREEMEKICSKRQGELGVENMK------------------RVQPPADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKD-------AVELNQTEGTFLLSCGILYLDPSWLN 853
            N +  +E+++WDF  H +Y S    FLT+G+L++LVVD++KF  + S  G  VY WLD LLC+VPGS VLVV TH D    + E   A + KL+  I +HLK KREE +   ++RQ E   +  +                     PP  L + G +  S RS    +  + +KI E+             LFP + + +P  W R  A+M AL +G DP  A    G ++    EG+    ++  E A   W G+  E   E  A+        +D       A++L Q  G+ L +CG+++L+ +W+N
Sbjct:  228 NFDPAVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHKFVCDPSSTGDTVYVWLDSLLCRVPGSVVLVVATHADAFGDNRERSAAALSKLEAAINDHLKEKREEWQ--TAQRQAEKAKQTPQDRCGPLASGSTTGYPADHAAAPPPTLQLCGFILGSGRSLED-LSVLGRKIWEIANEA--------SLFPDIHQTVPKSWRRVWAVMDALREGADPQKAVRLDGPLAPV--EGREKREFVTREAAFEAWWGVDGESVAELKAKGPDSQQLKQDSSRLFQAALKLRQMGGSVLAACGLVHLNVAWIN 524          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6H5L6I0_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I0_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.830e-32
Identity = 103/309 (33.33%), Postives = 152/309 (49.19%), Query Frame = 2
Query:    2 NGEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCA-MKKLDLFIGEHLKVKREEMEKICSKRQGELGVENMK-RVQPPADLYILGVMAVSCR------------SGGGR----MDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKD-------AVELNQTEGTFLLSCGILYLDPSWLN 853
            N +  +E+++WDF  H +Y S    FLT+G+L++LVVD++KF  + S  G  VY WLD LLC+VPGS VLVV T+ D    + E   A + KL+  I EHL+ KR  ME   ++RQ E   +  + R  PPA     G  A                SG GR    +  + +KI E+             LFP + + IP  W R  A+M AL +G DP  A    G ++    EG+    ++  E+A   W G   E   E  A+        +D       A++L Q  G+ L +CG+++L+ +W+N
Sbjct:  123 NFDPPVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHKFVCDPSSTGDTVYVWLDSLLCRVPGSVVLVVATYADAFGDNHERSAAALSKLEAAIHEHLEEKR--MEWQTAQRQAENTKQTPQDRCGPPASGSTTGYPADHAAAPPPTLQLCGFISGSGRSLEDLSVLGRKIWEIAHE--------ESLFPDIHQKIPKSWRRVWAVMDALREGADPQKAVRLDGPLAPV--EGREKREFVTREEAFEAWWGADGESVAELKAKGPDSQHLNQDSQRLFQAALKLRQMGGSVLAACGLVHLNVAWIN 419          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.460e-20
Identity = 78/303 (25.74%), Postives = 140/303 (46.20%), Query Frame = 2
Query:    5 GEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDE----VDCAMKKLDLFIGEHLKVKREEMEKICSKRQGELGVENMKRVQPPADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEGQTM---LPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKDAVELNQTEGTFLLSCG---------------ILYLDPSW 847
            G   L++ +WDF   + Y      FLT GAL +LVVD+  +  +       +  WLD+L  +VPGS VL++GTH D      E    VDC +K   L + ++  +KR   E   +  +G  GV++ +R +P   + +  ++A++    GG   A  ++ +E V +GV  G      FP+V   +P     A A + A+  G+    +  +P EV+     G  +    P++   +A+ R+  +  E+   G          L  A++L++ +G  LL+                 +++++P+W
Sbjct:  104 GNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSEDGHSREDALEQWLDILQARVPGSVVLLMGTHSDSFDSPAECSKRVDCFVKGELLPLYKNFIMKRIGDECKAAADRGHAGVQDNRRYEPLRVVVVKELLALNLSPSGGVTTAELREHIEGVAYGVHDGYS----FPSVNNEVPEPHLLAVATLEAVRRGVSLRGSGGEPAEVARRLNAGTKVGEGHPFVLFPEALSRFLEVAGEKPMFGGKATEGARVFLA-AIKLHEVQGAILLTRADGGGEMEDMASEEHLVIHMNPAW 401          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.960e-18
Identity = 78/278 (28.06%), Postives = 126/278 (45.32%), Query Frame = 2
Query:    5 GEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMKKLDLFIGEHLKVKREE--MEKICSKRQGELGVENMKRVQPPADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEV-----SHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKDAVELNQTEGTFLLS 817
            G   L++ +WDF   + Y      FLT GAL +LVVDI  +  +       +  WLD+L  +VPGS VL+VGTH D    D   DC+ + +   +G   K  RE    E   +  +   GV++ +R QP   + +  ++A++    GG   A  ++  E V +GV  G      FP+V   +P     A A + A+  G     +   P EV          EGQ   P++   +A+  +  +  E++  G        A L  A+ L++ +G  L++
Sbjct:  276 GNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSEDGHSREDALEQWLDILQARVPGSVVLLVGTHSDMF--DSPADCSKRDIMDRVGRECKSARERARQESAGNSDREYAGVQDSRRYQPLRIVVVDELLALNLTPSGGVTTAQLQEHFEGVAYGVHDGYS----FPSVNSEVPEPHLLAVATLEAVRRGATLRGSGGDPAEVVRRLDGEKLDEGQ---PFILFPEALSLFLEVAGEKSLFGGNATEGEQAFLA-AITLHERQGAILVT 543          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.060e-11
Identity = 68/238 (28.57%), Postives = 115/238 (48.32%), Query Frame = 2
Query:   17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMKKLDLF---IGEHLKVKREEMEKICSKRQGELG------VENMKRVQPPADLYILGVMAVSCRSGGGR-MDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKPGEVSHAKGEG--QTMLPYLHLEDAV 694
            L++ +WDF   + Y      FLT GAL +LVVD+  +   +S E  L   WL++L  +VPGS VL+VGTH D    ++  +C  ++ D F   + E +   R E +    + + ELG      ++   R QP   +    ++A+   S  G+ +D +++++  L  +G     DG   FP+V  V+P  +  A A + A+  G D   +      V+   GEG  +    ++   +AV
Sbjct:  415 LDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTYTEGQSREDALE-QWLEILQARVPGSVVLLVGTHTDLF-AENAAECT-RRTDRFKKDVEEIMTRLRCECDSAKDRVETELGEGHTTDLKGNPRYQPLRVVLKEELLALDLTSSDGQDIDLLQQRLEHLAYNGY----DGYS-FPSVRSVVPEPYLPAIATLEAVRRGADLRGSGRTREAVAQRLGEGDPKKRRSFVRFSEAV 644          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A8K0A9N6_BRALA (MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A9N6_BRALA)

HSP 1 Score: 71.6 bits (174), Expect = 2.650e-10
Identity = 54/197 (27.41%), Postives = 92/197 (46.70%), Query Frame = 2
Query:   17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMK----KLDLFIGEHLKVKREEMEKICSKRQGELGVENMKRVQPPAD------------LYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWA 559
            ++L+++DFG H  Y      FLT G+L++L VD+  +  E       V  W+D+L  +VPG+ VL+ GTH+D +K  +E+    +    +LD     ++K    ++ KI  + QG     +     P A             L    V  +S   G   +DA+R +I+ ++        + T  FP + +V+P  WA
Sbjct:  326 VKLLVYDFGGHPIYHMTHQLFLTKGSLHILTVDLASYRREAFPAS--VGKWVDILRARVPGTHVLLAGTHVDQIKDAEEIRLKCEDIETQLDQMQQNYVKDLDRQIRKIKKELQGSREESSNSSQDPYAKRLNELKDLKSNPLKFSRVYPLSSAEGLEGVDALRAEILRVL--------EDTSTFPDLRRVLPKTWA 512          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: C3ZG69_BRAFL (Roc domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZG69_BRAFL)

HSP 1 Score: 69.3 bits (168), Expect = 1.550e-9
Identity = 51/198 (25.76%), Postives = 96/198 (48.48%), Query Frame = 2
Query:   17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMKKLDLFIGE----HLKVKREEMEKICSKRQGELGVENMKRVQP-------------PADLYILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWA 559
            ++L+++DFG H  Y      FLT G+L++L VD+ ++  E       V  W+D+L  +VPG+ VL+ GTH+D +K  +E+    + ++  I +    H+K    ++ KI  + +G +  +++   Q                 L    V  +S   G   ++A+R +I+ ++        + T  FP + +V+P  WA
Sbjct:  380 VKLLVYDFGGHPIYHMTHQLFLTKGSLHILTVDLARYRKEAFPTS--VGKWVDILRARVPGTHVLLAGTHVDQIKDAEEIRTKCEDIETQIDQMQQNHVKDLDRQIRKITKELRG-VRSDSLNSTQDGYAKRLTELHDLKSKPLKFSRVFPLSSAEGLQGVNALRAEILRVM--------EDTSAFPDLRRVLPKTWA 566          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A401NP47_SCYTO (Roc domain-containing protein n=5 Tax=Galeoidea TaxID=119195 RepID=A0A401NP47_SCYTO)

HSP 1 Score: 68.9 bits (167), Expect = 2.090e-9
Identity = 61/219 (27.85%), Postives = 99/219 (45.21%), Query Frame = 2
Query:    2 NGEELLELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHID-CMKGDDEVDCAMKKLDLFIGEHLKVKR--EEMEKICSKRQGELGVE-NMKRVQPPADLY------------------------ILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWARASAL 574
            + E+ L  +++D    + YD + PFFL+ GAL +LVV +  +  +   E  LV  +L LL  +VP   V VVG H+D C + + E  C    LD+     L+ KR  E M+ +  K  G LG E +++   P A  Y                        +  V+AVSC+     ++ ++ K++ +  H          +FP + +V+P  W R   L
Sbjct:  431 DAEKNLTFIVYDLAGDQNYDLIQPFFLSPGALYVLVVSLKAYASDRFYE--LVGYFLHLLGARVPHGVVCVVGAHVDQCNEKEVEEKC----LDIHHQIALQEKRDVEVMQAVAEKVDGALGQEFDLRATSPHAPFYGVSDKNLRRKKAQVQYLLNNRLQILSPVIAVSCQEDHIGINRLKDKLLSVAEH--------REIFPNLHRVLPKSWQRLEEL 635          
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Match: A0A6P4YQC6_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YQC6_BRABE)

HSP 1 Score: 68.6 bits (166), Expect = 2.740e-9
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   17 LELMMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLDLLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMK----KLDLFIGEHLKVKREEMEKI-----CSKRQGELGVEN--MKRVQPPADLY-----ILGVMAVSCRSGGGRMDAVRKKIVELVMHGVRPGPDGTRLFPTVGKVIPMGWA 559
            ++L+++DFG H  Y      FLT G+L++L VD+  +  E       V  W+D+L  +VPG+ VL+ GTH+D ++  +E+    +    ++DL    ++K    +M KI      ++ +     +N   KR+    DL         V  +S   G   ++A+R +I+ ++        + T  FP + +V+P  WA
Sbjct:  230 VKLLVYDFGGHPVYHMTHQLFLTKGSLHILTVDLASYRRESFPAS--VGKWVDILRARVPGTHVLLAGTHVDQIRDAEEMRMKCEDIENQIDLMQQNYVKDLDRQMRKIKKELQSAREESSDSSQNGYAKRLTELEDLKSKPLKFSQVFPLSSAEGLEGVEALRAEILRVL--------EDTSAFPDLRRVLPKTWA 416          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig947.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLG1_ECTSI2.430e-3635.43LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI3.280e-3432.26LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5L6I0_9PHAE2.830e-3233.33Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE2.460e-2025.74Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ1_9PHAE5.960e-1828.06Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU35_ECTSI1.060e-1128.57LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A8K0A9N6_BRALA2.650e-1027.41MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
C3ZG69_BRAFL1.550e-925.76Roc domain-containing protein n=2 Tax=Branchiostom... [more]
A0A401NP47_SCYTO2.090e-927.85Roc domain-containing protein n=5 Tax=Galeoidea Ta... [more]
A0A6P4YQC6_BRABE2.740e-926.90malignant fibrous histiocytoma-amplified sequence ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig947contigC-tenellus_contig947:4465..7103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLG1
PFAMsLRR_8,Roc
Model size853
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.95e-36
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size828
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790178.4601083-CDS-C-tenellus_contig947:4464..45451680790178.4601083-CDS-C-tenellus_contig947:4464..4545Choristocarpus tenellus KU2346CDSC-tenellus_contig947 4465..4545 -
1680790178.475306-CDS-C-tenellus_contig947:6331..70781680790178.475306-CDS-C-tenellus_contig947:6331..7078Choristocarpus tenellus KU2346CDSC-tenellus_contig947 6332..7078 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790178.4865205-UTR-C-tenellus_contig947:7078..71031680790178.4865205-UTR-C-tenellus_contig947:7078..7103Choristocarpus tenellus KU2346UTRC-tenellus_contig947 7079..7103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig947.5.1prot_C-tenellus_contig947.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig947 4465..7078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig947.5.1

>prot_C-tenellus_contig947.5.1 ID=prot_C-tenellus_contig947.5.1|Name=mRNA_C-tenellus_contig947.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=276bp
MMWDFGAHKEYDSMCPFFLTTGALNLLVVDINKFYHEESEEGKLVYSWLD
LLLCKVPGSSVLVVGTHIDCMKGDDEVDCAMKKLDLFIGEHLKVKREEME
KICSKRQGELGVENMKRVQPPADLYILGVMAVSCRSGGGRMDAVRKKIVE
LVMHGVRPGPDGTRLFPTVGKVIPMGWARASALMVALHDGLDPLNAADKP
GEVSHAKGEGQTMLPYLHLEDAVGRWKGIWKERNWEGDAEDAAVTACLKD
AVELNQTEGTFLLSCGILYLDPSWLN
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mRNA from alignment at C-tenellus_contig947:4465..7103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig947.5.1 ID=mRNA_C-tenellus_contig947.5.1|Name=mRNA_C-tenellus_contig947.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2639bp|location=Sequence derived from alignment at C-tenellus_contig947:4465..7103- (Choristocarpus tenellus KU2346)
GAATGGTGAAGAGCTGCTAGAATTGATGATGTGGGACTTTGGCGCACACA AGGAGTACGACTCCATGTGTCCATTTTTTCTTACCACTGGCGCCTTAAAC CTTCTTGTGGTTGACATCAACAAGTTCTATCATGAAGAGTCAGAGGAAGG AAAGCTTGTCTACAGCTGGCTTGATCTGCTGCTGTGCAAGGTGCCTGGCT CGTCTGTTTTGGTTGTTGGGACGCATATCGACTGTATGAAGGGTGACGAT GAGGTTGACTGTGCGATGAAGAAGCTTGATCTTTTCATTGGTGAACACCT TAAAGTCAAACGTGAAGAGATGGAAAAGATCTGTTCTAAGCGGCAGGGGG AGTTGGGTGTGGAAAACATGAAGCGGGTTCAACCACCTGCGGACCTTTAC ATCTTAGGAGTGATGGCTGTATCGTGTCGGTCAGGAGGAGGAAGGATGGA TGCTGTTCGAAAGAAGATTGTGGAGCTTGTGATGCATGGAGTTAGACCTG GCCCAGATGGAACTCGCTTGTTTCCCACTGTTGGTAAGGTTATCCCAATG GGATGGGCAAGGGCATCTGCTCTGATGGTTGCCCTACATGATGGGTTGGA CCCCTTGAATGCAGCTGACAAGCCGGGTGAGGTGTCACATGCCAAGGGTG AAGGTCAAACGATGTTGCCGTATTTGCATTTGGAGGATGCTGTTGGGAGA TGGAAAGGTATCTGGAAGGAGAGAAACTGGGAGGGTGATGCAGAAGATGC TGCTGTCACTGCGTGTCTGAAGGTATGCAACCGTTTCTGTTATGGTCACT ATATATGGTCAATTTTGTTTTGATTTCTAACTTGTCTTAAGGATAAACTA CTCTTAGCGTAAGATATATATGTATATATATATATATATATATCGGGTTA GGGTTAGAGTTAATATATGTCTTGGAAGATTCTATATATCTTTTCGCTAT AGGGTTAGGGTCAGTGTTAGGGTTAATATGTCTTAGAAGATTATATTTTT TTCGTTACATTTAATTTGTTATGAAAGAGAACCTACCCTTCAATCCAACA TATTATTTATATTTATTGATTATTGTACTGTTAGGTATATTTCTTACCAA TCACACGTCCATTAAGGATTCTACAAGGGGTAATAAGATGACTTAAATTT AATTTTGTTTCTGATCTTACTTTTAAATTGGAATATCTCAGAGCATGGAT TTTTGAATTGCGTAGAGAGTTAAATTTTTGGGACAATGGAGGAGAGTGTG AGGTTAAATTTTGAATGGTATTTGGCATGATGATCCGTAGAAATGATATT TATTATGGTTAGGGTTAGGGTTAGGGTTAGTCAATTCTGTTTCTACCCTA CAAACCTTTGGTCCTCAAAATCTGTACTCAAGGAAATTGCATGTTGTTGA TATAAAGATACTCTCTGGAAGTACTAGAATCATGTAAAGGCAAAACTGTG TTGTTGGCAGGTTAGGGTTAGGGTTAGCATCTTCTACAAGGCGAAACTGT GGTTTTGGCAGTGCAATGCGACTTCTACTTTCCATTAATCTTGGAATATG TCTGTTAGGTGTACTTTTTCTGGAGATATAGACCCTCTATAGAGTTCACG ACCTTTGATGTTGATATTGAAAAAAATGTGCTTGGTTAGACATCACTAGA TCTATTTCTGAAAGGTGTGGAACTTCTCCTACTGTACCTTTCTTGAAACT TGTATTGGAGTTATCTTTTTGGAAAAGGTAGATGATGAGTACCAAGATGG AATTTTGTAGAATGGCAGCATATTGTATCATGAAGGAAGGCTTGCTGCTA TATTTAATTTTTGTGCTAATGAGTTGTCATAGTGGAAAGTGGTGTAAAAG TTGGTTTACTGGATTTCCATGCTTACGAAACATTAATATGTACTTACAAG TTCTTAAAGTTTGATTTTGCAACCCTTCAAAGAATTTGGGTTGGTTTACT TAGTACTTGTTGCTTTCATGTTGCACGCTCTCCAATTTATTTTTATTTTA TTGGTCCATGACTGTGTGCTGTTTTTTGGATCTGATTGAGTTAAACCAGA CCAGAGGTAGAATAACTTATCAACAAGAGATTTTTGTAGAATGATGGCAG TTTTGCTTTTGAGGAAGACTTGTTATTGTTGTGGTGGTAAATTTGTTTGG TGGTGCAAAGTGAAATTGAAAGGGGTTGACTTTATCAAGTCTGCAGTGGG TATTGTAGACGAGTGCTGTCCCTTCTGGAGTTTTTGCTATGCATGCATTT TAGGCTTTCTATTCTTGTTTTCACTTTGTGTTTGGATGAAGTGGGTTGTT TTATATTTTTTTTCAATTTTTCTTGTTGGGGACTGGTTGGTGTATTGTTA CCATTACTAGTCAAGTGAATAACCTAATAGGGATACCACATAGACCATAA GGTTATATAGTGTAACTCCTGAAATAAAAAAAAAGTTTGGGATAACCTTT TGAACCCATATACTGAAAGGTCAGACAATGACAAGTGTTTACATTTTTTT TGTCTAATTTTTTGCTTTGCCCGTGATGCAATTTGATAACCTTTTTGATG ATTCGCAGGATGCGGTTGAACTTAACCAGACGGAGGGTACATTCCTGCTG TCATGTGGAATACTCTATCTTGACCCATCTTGGCTGAAC
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Coding sequence (CDS) from alignment at C-tenellus_contig947:4465..7103-

>mRNA_C-tenellus_contig947.5.1 ID=mRNA_C-tenellus_contig947.5.1|Name=mRNA_C-tenellus_contig947.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=828bp|location=Sequence derived from alignment at C-tenellus_contig947:4465..7103- (Choristocarpus tenellus KU2346)
ATGATGTGGGACTTTGGCGCACACAAGGAGTACGACTCCATGTGTCCATT
TTTTCTTACCACTGGCGCCTTAAACCTTCTTGTGGTTGACATCAACAAGT
TCTATCATGAAGAGTCAGAGGAAGGAAAGCTTGTCTACAGCTGGCTTGAT
CTGCTGCTGTGCAAGGTGCCTGGCTCGTCTGTTTTGGTTGTTGGGACGCA
TATCGACTGTATGAAGGGTGACGATGAGGTTGACTGTGCGATGAAGAAGC
TTGATCTTTTCATTGGTGAACACCTTAAAGTCAAACGTGAAGAGATGGAA
AAGATCTGTTCTAAGCGGCAGGGGGAGTTGGGTGTGGAAAACATGAAGCG
GGTTCAACCACCTGCGGACCTTTACATCTTAGGAGTGATGGCTGTATCGT
GTCGGTCAGGAGGAGGAAGGATGGATGCTGTTCGAAAGAAGATTGTGGAG
CTTGTGATGCATGGAGTTAGACCTGGCCCAGATGGAACTCGCTTGTTTCC
CACTGTTGGTAAGGTTATCCCAATGGGATGGGCAAGGGCATCTGCTCTGA
TGGTTGCCCTACATGATGGGTTGGACCCCTTGAATGCAGCTGACAAGCCG
GGTGAGGTGTCACATGCCAAGGGTGAAGGTCAAACGATGTTGCCGTATTT
GCATTTGGAGGATGCTGTTGGGAGATGGAAAGGTATCTGGAAGGAGAGAA
ACTGGGAGGGTGATGCAGAAGATGCTGCTGTCACTGCGTGTCTGAAGGAT
GCGGTTGAACTTAACCAGACGGAGGGTACATTCCTGCTGTCATGTGGAAT
ACTCTATCTTGACCCATCTTGGCTGAAC
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