mRNA_C-tenellus_contig9381.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9381.2.1
Unique NamemRNA_C-tenellus_contig9381.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: D8LNF7_ECTSI (Transmembrane protein 107 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 4.970e-31
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1
Query:    1 MRVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMK 243
            M++EDRVIPARFLVTLGHL+G ++I KTK DNVYAGL  DPT  +V +A G VNAALA+A+VCF  DF+ +FFGLSIFMMK
Sbjct:    1 MKIEDRVIPARFLVTLGHLVGVILISKTKSDNVYAGLSSDPTAAEVATANGHVNAALALAMVCFGLDFMSLFFGLSIFMMK 81          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A835ZGM2_9STRA (Transmembrane protein 107 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGM2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.710e-30
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    4 RVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGL-GVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            R+E+ +IPARFL TLGH +  L++  +K   V AGL G  P+   + +A  +VN AL  A+ CFL DF G+ FG S FM KVN LQ +VHF GGVL ++ + EEWDYR++W
Sbjct:    4 RIEEALIPARFLTTLGHFLAVLILAGSKATVVNAGLAGGQPSADDIAAANSEVNGALIFALFCFLLDFAGLGFGFSAFMPKVNALQILVHFAGGVLTSRLVVEEWDYRVFW 114          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A7S2UVK1_9STRA (Transmembrane protein 107 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.820e-30
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 MRVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            M +E R+IPARFL+TLGHLI T+M+     + VYAGL  D T  ++ +A  ++  A+ +A++CFL D +G+  G +IF  +VNV Q I HF GG+ V+ FI E WDYR+ W
Sbjct:    1 MGLERRLIPARFLITLGHLIPTVMVMYVMEEQVYAGLSADATDKEIAAATAELEGAVLLAIICFLVDLLGLVAGFTIFSTRVNVFQIIAHFVGGIQVSTFIHEVWDYRVLW 111          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A7S3NE17_9STRA (Transmembrane protein 107 n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NE17_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.220e-28
Identity = 52/110 (47.27%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    4 RVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            RV + +IPARF++T+GHL+  LMI  TK +N++AGL VDP+  ++  A+ +   A  ++++CF FD  GIFFG SIF +K+N+LQ I HF GGV+V+  I + W Y+  W
Sbjct:    5 RVLEVLIPARFVLTVGHLVAMLMIAYTKRENLFAGLPVDPSNTRLDKAKKEFEIAYILSLICFAFDLFGIFFGTSIFFVKMNLLQIICHFTGGVMVSLMIEQAWQYQYIW 114          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: F0YLV6_AURAN (Transmembrane protein 107 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLV6_AURAN)

HSP 1 Score: 103 bits (257), Expect = 3.550e-26
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   22 IPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            IPARF++T+GHL+  LMI  TK +N+ AGL  DP   +   A+ +  AA  V + CF+FD +GI  G S+F  K N+LQ I HF GGVLV+  IA+ W Y+  W
Sbjct:    2 IPARFMLTMGHLVSLLMIVYTKKENILAGLPRDPGKARYDEAKAEFEAAYVVCLACFVFDMVGILTGTSLFFPKANLLQIICHFAGGVLVSSMIAQSWQYQYIW 105          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A3P3Y2A6_PLABS (Transmembrane protein 107 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y2A6_PLABS)

HSP 1 Score: 86.7 bits (213), Expect = 1.920e-19
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1
Query:    1 MRVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            M +E  ++P RFL+T  HL+  L +F +K  N+ A L +  TT Q +S   ++ AAL +AVVCF+ +++G+F G+SI     N    + HF G +L+A F  E W+    W
Sbjct:    1 MGIESTLLPTRFLLTTVHLMAILTLFNSKDANIRAALPISYTTVQYSSMNNQMLAALWIAVVCFIVEYLGMFSGVSIMKHAHNSFYVVAHFIGAILIASFALESWNMLAIW 111          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A8J2S4M7_9STRA (Transmembrane protein 107 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4M7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.310e-17
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   22 IPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            IPARFL+T+GHL+  L +  T+ +N+ + +  DP       A+ +   A A+ +VCF  D +GI  G S+F  K N+LQ I HF G   +   I + W Y+  W
Sbjct:   10 IPARFLLTVGHLVSVLTMVHTRKENLSSAVSADPK-----DAQKEFMMAYAICLVCFAVDVLGILMGTSLFFPKANLLQIICHFVGSCFITSMITQSWQYQYIW 108          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A7S3HJZ1_9STRA (Transmembrane protein 107 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJZ1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.390e-16
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 VEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            V+  +I ARF+ T+GH I  L++F T  +N+   LG +  + +   A     AAL +  +CF+ DF G+FFG S+F    N+   +VHF GG+L++  +   W+Y+  W
Sbjct:    4 VQQYLISARFITTMGHFIALLLLFSTIDNNIDESLGDNYDSEEKQWATETSWAALIIGFLCFVCDFAGLFFGTSLFYNTGNMFHILVHFIGGILLSWVVTYSWNYKALW 112          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A5A8C0J5_CAFRO (Transmembrane protein 107 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C0J5_CAFRO)

HSP 1 Score: 74.3 bits (181), Expect = 1.310e-14
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    4 RVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            +  + ++P RF++T+G LI TL+++  + DNV   +  +PTT ++ +A+  V AA AV ++C      G+  G S+FM  V +LQ +     GVL   FI   W     W
Sbjct:    5 KTAEIIVPLRFMLTVGTLIATLLVYFHRADNVAVSVAGNPTTAELQAADASVLAAWAVQLICLAISLTGLLGGFSMFMHGVGLLQIVCQLAAGVLTCLFILGSWHIAALW 114          
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Match: A0A1S8W9G7_9FUNG (Transmembrane protein 107 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W9G7_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 6.070e-13
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 MRVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAEGKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQFIAEEWDYRLYW 333
            M +   +IPARFLVT+GHLI T+M F TK  N+ + L +  +T    + E  + AAL +  + F+ +F G+  G ++F    + +  + H  G + ++ F+ E W Y  YW
Sbjct:    1 MTILSSIIPARFLVTIGHLIATIMAFLTKDSNIMSALPIS-STLDYRAFEQSLVAALILTWILFVIEFSGLLSGRTMFCTASSTIHIVAHAAGMISLSLFMTEGWHYITYW 110          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9381.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LNF7_ECTSI4.970e-3170.37Transmembrane protein 107 n=1 Tax=Ectocarpus silic... [more]
A0A835ZGM2_9STRA3.710e-3050.45Transmembrane protein 107 n=1 Tax=Tribonema minus ... [more]
A0A7S2UVK1_9STRA4.820e-3047.75Transmembrane protein 107 n=1 Tax=Fibrocapsa japon... [more]
A0A7S3NE17_9STRA1.220e-2847.27Transmembrane protein 107 n=2 Tax=Aureoumbra lagun... [more]
F0YLV6_AURAN3.550e-2648.08Transmembrane protein 107 (Fragment) n=1 Tax=Aureo... [more]
A0A3P3Y2A6_PLABS1.920e-1937.84Transmembrane protein 107 n=1 Tax=Plasmodiophora b... [more]
A0A8J2S4M7_9STRA6.310e-1737.50Transmembrane protein 107 n=1 Tax=Pelagomonas calc... [more]
A0A7S3HJZ1_9STRA1.390e-1635.78Transmembrane protein 107 n=1 Tax=Spumella elongat... [more]
A0A5A8C0J5_CAFRO1.310e-1433.64Transmembrane protein 107 n=1 Tax=Cafeteria roenbe... [more]
A0A1S8W9G7_9FUNG6.070e-1334.23Transmembrane protein 107 n=1 Tax=Batrachochytrium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9381contigC-tenellus_contig9381:2403..3075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009041455.1
Preferred nameTMEM107
PFAMsTMEM107
Model size336
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016043,GO:0021532,GO:0021915,GO:0022607,GO:0030030,GO:0030031,GO:0030326,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035869,GO:0036038,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051641,GO:0060173,GO:0060271,GO:0060429,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904491,GO:1905515
Exons3
Evalue5.82e-27
EggNOG OGs2AP86@1|root,2RZG7@2759|Eukaryota
Ec32 ortholog descriptionTransmembrane protein 107
Ec32 orthologEc-04_004030.1
Descriptionprotein localization to ciliary transition zone
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790173.7220857-CDS-C-tenellus_contig9381:2402..24951680790173.7220857-CDS-C-tenellus_contig9381:2402..2495Choristocarpus tenellus KU2346CDSC-tenellus_contig9381 2403..2495 -
1680790173.733097-CDS-C-tenellus_contig9381:2702..27831680790173.733097-CDS-C-tenellus_contig9381:2702..2783Choristocarpus tenellus KU2346CDSC-tenellus_contig9381 2703..2783 -
1680790173.7468293-CDS-C-tenellus_contig9381:2913..30751680790173.7468293-CDS-C-tenellus_contig9381:2913..3075Choristocarpus tenellus KU2346CDSC-tenellus_contig9381 2914..3075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9381.2.1prot_C-tenellus_contig9381.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9381 2403..3075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9381.2.1

>prot_C-tenellus_contig9381.2.1 ID=prot_C-tenellus_contig9381.2.1|Name=mRNA_C-tenellus_contig9381.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp
MRVEDRVIPARFLVTLGHLIGTLMIFKTKIDNVYAGLGVDPTTFQVTSAE
GKVNAALAVAVVCFLFDFIGIFFGLSIFMMKVNVLQTIVHFFGGVLVAQF
IAEEWDYRLYW*
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mRNA from alignment at C-tenellus_contig9381:2403..3075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9381.2.1 ID=mRNA_C-tenellus_contig9381.2.1|Name=mRNA_C-tenellus_contig9381.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=673bp|location=Sequence derived from alignment at C-tenellus_contig9381:2403..3075- (Choristocarpus tenellus KU2346)
ATGAGGGTGGAAGACAGGGTGATCCCAGCGAGGTTTCTTGTGACACTTGG GCACCTCATTGGCACACTCATGATATTCAAGACCAAGATCGATAATGTCT ACGCCGGATTAGGGGTTGACCCCACCACTTTTCAAGTGACCTCAGCCGAA GGAAAAGTTAATGTGAGGAATAAGCTTGTTGTCAGACATGTTCGCCGATA ATAAAAAATCGGTTGTCAGAAATTGCGCTCAAACTACCGTGGACCTAATG CTTGTTTGGGATCACCTTCTACGCAATACCATCCACCTTCAGGCGGCCCT TGCTGTGGCAGTGGTGTGCTTCCTCTTCGACTTTATTGGGATTTTCTTCG GTCTCTCTATCTTTATGATGAAGGTGATTTACACGTGTGCATCAGTCTTG TCGTCCATTGCTCGTGTTGTAATCTTGAGAGATGGAGAACTACAGTCCAC GTATTACCTACCCGGAACAACAATTTCGTGGTCGAGTTGCTCCTAATGCT CGAGTGACCTTTCAGACGCATATTTCCTGTTGCATTGGAAATGTATGTTC AGTTGACCCCCTACCTCTATGCCTGTTCAGGTGAACGTCCTACAGACCAT AGTGCACTTCTTCGGGGGTGTCTTGGTGGCGCAGTTCATTGCAGAAGAGT GGGACTATCGCTTATATTGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9381:2403..3075-

>mRNA_C-tenellus_contig9381.2.1 ID=mRNA_C-tenellus_contig9381.2.1|Name=mRNA_C-tenellus_contig9381.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig9381:2403..3075- (Choristocarpus tenellus KU2346)
ATGAGGGTGGAAGACAGGGTGATCCCAGCGAGGTTTCTTGTGACACTTGG
GCACCTCATTGGCACACTCATGATATTCAAGACCAAGATCGATAATGTCT
ACGCCGGATTAGGGGTTGACCCCACCACTTTTCAAGTGACCTCAGCCGAA
GGAAAAGTTAATGCGGCCCTTGCTGTGGCAGTGGTGTGCTTCCTCTTCGA
CTTTATTGGGATTTTCTTCGGTCTCTCTATCTTTATGATGAAGGTGAACG
TCCTACAGACCATAGTGCACTTCTTCGGGGGTGTCTTGGTGGCGCAGTTC
ATTGCAGAAGAGTGGGACTATCGCTTATATTGGTGA
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