mRNA_C-tenellus_contig9359.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9359.1.1
Unique NamemRNA_C-tenellus_contig9359.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A6H5KHD0_9PHAE (BING4CT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHD0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.970e-28
Identity = 66/93 (70.97%), Postives = 76/93 (81.72%), Query Frame = 2
Query:  590 YSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELAEAANPR-KTTPREKNKTRGRSKV 865
            YS+MVVPGAGEPNFD++EANPF+TSKQRRE+EV SLL+KL PETI LDPSFVGRVD DP+ L  EQ+ + EAAN R     +EK K RGRSKV
Sbjct:  484 YSSMVVPGAGEPNFDTFEANPFQTSKQRRESEVVSLLEKLTPETIGLDPSFVGRVDADPVALQAEQRAIMEAANTRGPKVVKEKKKMRGRSKV 576          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A835ZC99_9STRA (U3 snoRNP-associated protein Utp7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC99_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.820e-24
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 2
Query:  590 YSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELAEAANPR-KTTPREKNKTRGRSKVG 868
            Y+T++VPGAGEPNFD++ ANPFET KQRRE EV +LLDKL PETI LDP+ V  VD DP  L  E + L EAA+ R K  PR KNK RGR+K+G
Sbjct:  343 YATLLVPGAGEPNFDTFAANPFETRKQRREGEVKALLDKLGPETIMLDPAAVATVDADPEALRGELRALQEAADARPKAAPRAKNKMRGRNKIG 436          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A7S2RBW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBW9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.820e-23
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  548 PFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELAEAANP--RKTTPREKNKTRGRSKVG 868
            PF   L I  L   + ++VVPGAGEPN+D+ EANPFE+ K+RREAEVH LLDKL PETI+LD  F+G +D D   L ++  EL +AA     +   R KNK +GRSK+G
Sbjct:   20 PFEDALGIGKLRG-FESIVVPGAGEPNYDALEANPFESKKERREAEVHKLLDKLGPETIALDSEFIGAIDGDAASLERDMVELRQAARAGHEEKPKRMKNKMKGRSKIG 127          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: W7TI68_9STRA (U3 snornp-associated protein utp7 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI68_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.530e-21
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  536 LFFSPFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQEL 796
            L F PF   L I   +  Y +MVVPGAGEPNFDS EANPF++ KQRREAEVH LLDKLAPETI+LDP  +G VD+ P  L+KEQ+++
Sbjct:  404 LRFRPFEDVLGIGH-KGGYVSMVVPGAGEPNFDSLEANPFQSRKQRREAEVHGLLDKLAPETITLDPRSIGAVDRQPDELMKEQRDM 489          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A4D9D172_9STRA (BING4CT domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D172_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.880e-21
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  536 LFFSPFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQEL 796
            L F PF   L I   +  Y +MVVPGAGEPNFDS EANPF++ KQRREAEVH LLDKLAPETI+LDP  +G VD+ P  L+KEQ+++
Sbjct: 1618 LRFRPFEDVLGIGH-KGGYVSMVVPGAGEPNFDSLEANPFQSRKQRREAEVHGLLDKLAPETITLDPRSIGAVDRQPDELMKEQRDM 1703          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A7S3UTF9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTF9_HETAK)

HSP 1 Score: 100 bits (249), Expect = 7.240e-21
Identity = 55/109 (50.46%), Postives = 80/109 (73.39%), Query Frame = 2
Query:  542 FSPFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELAEAANPRKTTPRE-KNKTRGRSKV 865
            F P+   L +   E  ++++VVPGAGE NFDS+ ANPF+T+KQ+REAEV +LLDKL P+ I LDP  +G VD++ + L KEQ+++AE+A+ R    ++ +NK RGRSK+
Sbjct:  175 FRPYEDALGVGHSEG-FTSVVVPGAGEANFDSFAANPFQTTKQKREAEVQALLDKLQPDMIGLDPDVIGTVDRNHIELAKEQKQIAESADRRPEKEKKLRNKMRGRSKM 282          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: L1J1L4_GUITC (BING4CT domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J1L4_GUITC)

HSP 1 Score: 97.8 bits (242), Expect = 1.220e-19
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 2
Query:  536 LFFSPFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELAEAAN--PRKTTPREKNKTRGRSKVG 868
            ++F PF   L I      +S+++VPG+GEPNFDS+EANPF+  KQRREAE+H+LL+KL P+ ISL+P+F+G VD     ++ E++ LA   N   R+   +EK   RGR + G
Sbjct:  224 VYFRPFEDVLGISHSHG-FSSILVPGSGEPNFDSFEANPFQNKKQRREAEIHALLEKLDPDMISLNPNFIGNVDTYDKDVIAEERRLAREENLTERQRQKKEKRHARGRDRAG 335          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A1Y3NKN8_PIRSE (BING4CT domain-containing protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NKN8_PIRSE)

HSP 1 Score: 97.8 bits (242), Expect = 1.310e-19
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  542 FSPFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELA-EAANPR-KTTPREKNKTRGRS 859
            F PF   L I   +  +S++V+PG+GEPNFDS EANP+ET KQRRE EVH LL+KL PETI+L+P+F+G VD+    ++ E+++L  EAA+P  K  PR++  TRG+S
Sbjct:  264 FCPFEDILGISH-DKGFSSIVIPGSGEPNFDSLEANPYETVKQRREKEVHDLLEKLQPETIALNPNFIGSVDRASKDIINEEKKLEWEAAHPNEKFEPRKR--TRGKS 368          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A2R5FZI2_9STRA (WD repeat-containing protein 46 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZI2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.400e-19
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  596 TMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDK-DPMVLLKE-QQELAEAANPRKTTPREKNKTRGRSKVG 868
            TMVVPGAG  N+D++EANP+E++KQRRE EV  LLDKL PE I LDP+ +G VD  D  ++ KE +QELAEAA   K  P+E+NK +GRSK+G
Sbjct:  422 TMVVPGAGAANYDAFEANPYESTKQRREGEVQRLLDKLQPEMIVLDPNAIGGVDTADKTIIAKEREQELAEAAAA-KGGPKERNKMKGRSKIG 513          
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Match: A0A2V3IYI2_9FLOR (U3 small nucleolar RNA-associated protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYI2_9FLOR)

HSP 1 Score: 97.8 bits (242), Expect = 3.100e-19
Identity = 73/188 (38.83%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  365 DVKMVRKVLRKLGKKYSTW--CSPSLGCSQRRPYSPLHISAYTHTYKS---------TKHRSLP*MQLLF---------FSPFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRREAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELAEAANPRKTTPRE-KNKTRGRSKV 865
            D ++    LR   K + T    SPS  C  +R    L   A    +           T+ RS P M+  +         F PF   L +   ET    M+VPGAGEP FD+   NP+ET KQRR+ EV +L+DKL P TI LDPS VG VDKDP+  ++E +E+   AN  K   R  K K +GRSK+
Sbjct:  291 DARLCFWDLRTFRKLFETNLPASPSALCVSQRQLVALSFGATVQIWSPFSKSYGLSVTQQRSQPYMRQTYSGNRITSLQFCPFEDVLAV-CHETGVRNMIVPGAGEPTFDTRAPNPYETRKQRRQNEVRTLIDKLPPATIMLDPSNVGTVDKDPVQRVREIREIQNRANLDKIQRRALKKKQKGRSKI 477          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHD0_9PHAE5.970e-2870.97BING4CT domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZC99_9STRA1.820e-2463.83U3 snoRNP-associated protein Utp7 n=1 Tax=Tribonem... [more]
A0A7S2RBW9_9STRA1.820e-2353.21Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W7TI68_9STRA4.530e-2163.22U3 snornp-associated protein utp7 n=1 Tax=Nannochl... [more]
A0A4D9D172_9STRA6.880e-2163.22BING4CT domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S3UTF9_HETAK7.240e-2150.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1J1L4_GUITC1.220e-1946.90BING4CT domain-containing protein n=1 Tax=Guillard... [more]
A0A1Y3NKN8_PIRSE1.310e-1952.78BING4CT domain-containing protein n=1 Tax=Piromyce... [more]
A0A2R5FZI2_9STRA2.400e-1960.22WD repeat-containing protein 46 n=1 Tax=Hondaea fe... [more]
A0A2V3IYI2_9FLOR3.100e-1938.83U3 small nucleolar RNA-associated protein 7 n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9359contigC-tenellus_contig9359:84..1449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNZ6
PFAMsBING4CT,WD40
Model size868
Max annot lvl2759|Eukaryota
KEGG koko:K14768
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons2
Evalue1.79e-31
EggNOG OGsKOG1272@1|root,KOG1272@2759|Eukaryota
Ec32 ortholog descriptionU3 snoRNP-associated protein Utp7
Ec32 orthologEc-10_004950.1
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size342
COG categoryS
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.4164438-UTR-C-tenellus_contig9359:83..6091680790172.4164438-UTR-C-tenellus_contig9359:83..609Choristocarpus tenellus KU2346UTRC-tenellus_contig9359 84..609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.4324358-CDS-C-tenellus_contig9359:609..8701680790172.4324358-CDS-C-tenellus_contig9359:609..870Choristocarpus tenellus KU2346CDSC-tenellus_contig9359 610..870 +
1680790172.4436405-CDS-C-tenellus_contig9359:1368..14491680790172.4436405-CDS-C-tenellus_contig9359:1368..1449Choristocarpus tenellus KU2346CDSC-tenellus_contig9359 1369..1449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9359.1.1prot_C-tenellus_contig9359.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9359 610..1449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9359.1.1

>prot_C-tenellus_contig9359.1.1 ID=prot_C-tenellus_contig9359.1.1|Name=mRNA_C-tenellus_contig9359.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=114bp
MQLLFFSPFYPCLTIQLLETRYSTMVVPGAGEPNFDSYEANPFETSKQRR
EAEVHSLLDKLAPETISLDPSFVGRVDKDPMVLLKEQQELAEAANPRKTT
PREKNKTRGRSKVG
back to top

mRNA from alignment at C-tenellus_contig9359:84..1449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9359.1.1 ID=mRNA_C-tenellus_contig9359.1.1|Name=mRNA_C-tenellus_contig9359.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1366bp|location=Sequence derived from alignment at C-tenellus_contig9359:84..1449+ (Choristocarpus tenellus KU2346)
TTAGATATTTTTTTAACGTCTTTTTAGAGATACGTTTGTTGGACATTTGG TTGTATTCTTGGAGGCGTTTTTGTGCGTGATTAGACCGCTGAAAGTGCAC ACAGGAAAGTTCCCACTGTCTTTGAGAGAGACCTCGCTAGTCCTTGGGTG GGAACTCTTGCTATCACATACTGTTTTGTTTCTTGAAAAAAAAATGGTTA GAGCAATGTTTTTTGCACGGAAGGTTAGGGTTAGGGTTGGAGTTGGAGTT TAGAGTACAAGATGTGAAAGTTTTCTTGGAAACATCCCCAAGAGCATGTC AAAAATGGTTTGAAGACAAATAACATAGTGTGATTCAAAGAATGGTATGA AGTGGTTCCACGGCGATGTCAAAATGGTTAGGAAAGTTCTTAGAAAATTA GGTAAGAAATATTCCACATGGTGCTCCCCAAGCTTGGGGTGCTCCCAAAG GAGGCCTTACTCCCCACTGCACATCAGCGCATACACACACACATACAAAA GTACAAAGCACAGAAGCCTTCCATGAATGCAACTCCTTTTTTTTTCTCCC TTTTATCCCTGCCTTACGATACAACTCCTTGAGACAAGGTACTCCACCAT GGTGGTCCCTGGGGCAGGTGAGCCTAACTTTGACTCCTACGAGGCCAATC CTTTTGAGACCTCAAAGCAGCGGAGGGAGGCGGAGGTGCACTCGCTGTTG GACAAGCTTGCTCCGGAGACGATAAGCCTGGACCCATCCTTTGTTGGCAG GGTGGATAAGGATCCGATGGTGTTGCTGAAGGAGCAGGTGAGCTAGATGT GGGGTGGGGTGTGGGTATATGGGTGACCTTTGTTGAGAGTAGAGGAAGGA GGTGCAGTGGGTGTGGAGCTTGTTAGGTGGGTGGTGAGTGGGGTTGACTC TGGGGGTGTCTGAAGTTGTTTGAGGTTGTTGGTTAGAGGGGCTGTTGTGT TTGTACAGAATGGGAGTGGTGGATGGATAGAGTGGTTGAGAGTTAGGGTT GGTGGGGAGGTTAAGGGTTAGGGGTGTTTTCCCCTTTGCTGGGAAGGGTT GAGGTTTTGTTTTTTACTGGATTCCCTATGCTGTACTGCTGCTATGGTGC AGGTGAACATTGATGGGTTTTTTTTGTAAGTTGTGAGCAGAGTGGAAGTG TCACAACTAAGAACGTTTGGATAGTACTGTGATTATGTTACTTGTGCACA ATCTTTTTCTTTTCAATTCTGTTGGTTACACACACACACACACGCGCGCG CACGCAATTTCTCACTGGCCCTTGTTCTCTTACAGCAAGAGCTGGCGGAA GCAGCCAACCCAAGAAAGACCACACCGAGGGAGAAGAACAAGACCCGAGG CAGGAGCAAGGTGGGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9359:84..1449+

>mRNA_C-tenellus_contig9359.1.1 ID=mRNA_C-tenellus_contig9359.1.1|Name=mRNA_C-tenellus_contig9359.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=342bp|location=Sequence derived from alignment at C-tenellus_contig9359:84..1449+ (Choristocarpus tenellus KU2346)
ATGCAACTCCTTTTTTTTTCTCCCTTTTATCCCTGCCTTACGATACAACT
CCTTGAGACAAGGTACTCCACCATGGTGGTCCCTGGGGCAGGTGAGCCTA
ACTTTGACTCCTACGAGGCCAATCCTTTTGAGACCTCAAAGCAGCGGAGG
GAGGCGGAGGTGCACTCGCTGTTGGACAAGCTTGCTCCGGAGACGATAAG
CCTGGACCCATCCTTTGTTGGCAGGGTGGATAAGGATCCGATGGTGTTGC
TGAAGGAGCAGCAAGAGCTGGCGGAAGCAGCCAACCCAAGAAAGACCACA
CCGAGGGAGAAGAACAAGACCCGAGGCAGGAGCAAGGTGGGG
back to top