mRNA_C-tenellus_contig9357.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9357.2.1
Unique NamemRNA_C-tenellus_contig9357.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9357.2.1 vs. uniprot
Match: D7G3H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.360e-22
Identity = 85/225 (37.78%), Postives = 105/225 (46.67%), Query Frame = 1 
Query:  433 LMAEVTAVPFSRVVVARVAIKDPNQGGIIRNTFNWDLLDPPAER-EVTAAVQAN--VHSISRLMERMAPLSLAGDGQACGGTGLGRGTAVSKSMRASVDDIVKRCHAHGVLYVDPLFPPTDVSLGPSLARKA--AWRRPCDFPDAFCPPPSSFSLTSAAATSELRQRRGSKKEAFLLSLARQRAFGTGGQPSPNDVRGAVMAADASLTCALKALASRPHLVHSAL 1092
            + A V+   F R VVARV ++DP  GG ++ + +W+LL+P A    V  A + N    SI R +     L LAG           R     +      ++IVKRC  HGVLY+D  FPP D SLGPSLA      WRRP  F                +AT                      AFG  G+P P+DVR    AADASL CAL ALA RP LV +AL
Sbjct:    1 MAARVSTEAFCRAVVARVTVRDPKVGGTLKTSCSWELLEPSASPVPVGKASRENKSTASIRRQLRSAQSLGLAGT----------RDDGAERLATQRSEEIVKRCGIHGVLYIDLEFPPNDSSLGPSLAASGLVTWRRPIQF-------------DCGSAT----------------------AFGGYGRPLPSDVRPCPFAADASLACALAALAERPCLVSAAL 180
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9357.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H8_ECTSI1.360e-2237.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9357contigC-tenellus_contig9357:2080..5532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3H8
PFAMsCalpain_III,Peptidase_C2
Model size1182
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue2.23e-23
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota
Descriptioncalcium-dependent cysteine-type endopeptidase activity
Cds size1182
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.3353434-CDS-C-tenellus_contig9357:2079..22951680790172.3353434-CDS-C-tenellus_contig9357:2079..2295Choristocarpus tenellus KU2346CDSC-tenellus_contig9357 2080..2295 +
1680790172.3526144-CDS-C-tenellus_contig9357:2540..26361680790172.3526144-CDS-C-tenellus_contig9357:2540..2636Choristocarpus tenellus KU2346CDSC-tenellus_contig9357 2541..2636 +
1680790172.363532-CDS-C-tenellus_contig9357:2949..31591680790172.363532-CDS-C-tenellus_contig9357:2949..3159Choristocarpus tenellus KU2346CDSC-tenellus_contig9357 2950..3159 +
1680790172.375691-CDS-C-tenellus_contig9357:3610..38381680790172.375691-CDS-C-tenellus_contig9357:3610..3838Choristocarpus tenellus KU2346CDSC-tenellus_contig9357 3611..3838 +
1680790172.3852375-CDS-C-tenellus_contig9357:5100..55321680790172.3852375-CDS-C-tenellus_contig9357:5100..5532Choristocarpus tenellus KU2346CDSC-tenellus_contig9357 5101..5532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9357.2.1prot_C-tenellus_contig9357.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9357 2080..5532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9357.2.1

>prot_C-tenellus_contig9357.2.1 ID=prot_C-tenellus_contig9357.2.1|Name=mRNA_C-tenellus_contig9357.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=394bp
VCCILTHLFAIFTIVLQTTRYKVLGYLIRYSFWEIFASYMVVSSRSQVLG
SADERQSKFKQRKRPGSRVTVTATPKPSVKEVAGGIFLYTTRVRDGNDYF
FVYEVECVLPRPQSLRFSIDFSGSTNLMLLGTTSAQTDTRTEQQLMAEVT
AVPFSRVVVARVAIKDPNQGGIIRNTFNWDLLDPPAEREVTAAVQANVHS
ISRLMERMAPLSLAGDGQACGGTGLGRGTAVSKSMRASVDDIVKRCHAHG
VLYVDPLFPPTDVSLGPSLARKAAWRRPCDFPDAFCPPPSSFSLTSAAAT
SELRQRRGSKKEAFLLSLARQRAFGTGGQPSPNDVRGAVMAADASLTCAL
KALASRPHLVHSALSLHSGREVTGGRAGLGTGKSSDLSSSLMSG
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mRNA from alignment at C-tenellus_contig9357:2080..5532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9357.2.1 ID=mRNA_C-tenellus_contig9357.2.1|Name=mRNA_C-tenellus_contig9357.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3453bp|location=Sequence derived from alignment at C-tenellus_contig9357:2080..5532+ (Choristocarpus tenellus KU2346)
GTTTGTTGTATCCTTACTCACCTCTTTGCAATCTTTACCATTGTGTTGCA
AACTACGAGATACAAGGTACTGGGTTACCTCATCAGATATTCCTTTTGGG
AAATATTTGCAAGCTATATGGTGGTGTCATCGCGTTCGCAAGTCCTGGGA
TCTGCGGACGAGAGGCAATCAAAGTTTAAACAGAGGAAGCGTCCAGGTTC
AAGGGTGACCGTGACGGTGAGGATACCAAGACCAGGATGGGCAATATGGG
GCAATAGGTTACTCCTTGTATTTTGTGAGGAGTAAATATTTAATCAAGGC
CTTCTGCAAAGTCTGAGTATTGGAAAGTGGTCATTGGATGTTGTAACTAT
GATACGGAGACCATAATGATGTAGATGATGTGTCTTGCACCCAAGGAATG
AGCACACTTTTTTTGTGTTATCATAGACTTCATCCTCCCATGGCTGATTT
GACCTCTGCAGGCAACCCCAAAGCCGAGCGTAAAAGAGGTGGCAGGTGGA
ATCTTTCTCTACACCACCCGTGTCCGTGACGGGAATGATTACTTCTTCGT
ATATGAGGTAAGCGTCTGAACTGGAGGTTTTTCCACCTTAACCCAATTTC
GGGATAGATCGTAGGGAGAGGTTGGTTGGATCAGCAAACGCCCTTGTTCT
CAATACGTGCATACTTCGGGCACTCAAAGGGTTTCCCCGAGAATCTTAAT
ACAATGATTCTCTGTGTTTATACCAGCCTGATCTTGACGGTCTGTGCAGT
ATCCACAAACAACTGATATAGCTCGATGCTCCCTCTGGGCTCAACTCCCT
TCTAGACCTTGTCCTTTCTCTTACTGTCCACGAATACTGCCGCTGTCCCG
TCGCCATATTTTCACATCAGGTGGAGTGTGTCCTTCCTCGCCCCCAAAGC
TTGCGCTTTTCCATTGATTTTTCGGGTTCCACAAACCTGATGCTGCTCGG
AACCACGTCGGCACAGACGGACACGAGAACAGAGCAACAGCTAATGGCAG
AGGTTACTGCAGTACCTTTCAGCCGAGTAGTGGTGGCTAGAGTGGCGATA
AAAGACCCTAATCAAGGAGGCATAATCCGGGTGAGTGTCTAGACTCCTTG
TGCTTCATACTCGGGTGAAGTCGTTCCTCTTTCACCTCTTTACTTTCCTC
TATCCCTTCATTCTTGTTTCCTTTGCTGTTTTTCATGTCCCGATGTTCAT
GCTGAGATGCAAGTCTTGGTATTGACAACAAGAAATGATTTTTTCCTTTG
TGGGTAGCCTCACCTAGTGCAGACGAAGCCCTTCAGCCCTTGACCTCTCG
CGCACCACTCCACCCCTTTGAGCCTAGAAATACCTGATATATGCATTATT
TTTTTATGTATCAACTATATGCAACAAAACCATCCCATTCTACTGTGGCA
ACAGCTAACCTGCTTTGCAACCACCCCTTTCTTCCAAAGTACTTTCTCCT
TTTAGCCTACCAACACACTCTGCTAAGGCATCCTACTGCTCCCCAAAGTC
TTTATCAAACCAATCATTGCACACTCGGCAGAACACATTCAACTGGGACC
TCCTAGATCCTCCTGCGGAGAGAGAGGTCACAGCTGCGGTACAGGCAAAT
GTTCACTCAATATCTCGGCTCATGGAGAGAATGGCTCCACTATCACTTGC
GGGAGATGGACAAGCTTGTGGAGGCACAGGGCTGGGTAGGGGCACCGCCG
TTTCAAAGAGCATGAGAGCATCAGTCGATGATATTGTGAAGCGGTGTCAT
GCCCACGGGGTGAGGTTCTTACCGCTCCAGTATTGGGCTGAGGTGGAGAG
GGTGGTGGGCATGTATGTTGGCCCTCAAGGTTGACTGTGCTTTGGTTTTT
CAGGTAGCATGGTTGAAGGAATACCATAGTGGGTGATGAGCATGATGTCA
GGTGAAAGCAGATGTTCAATTGTGGGGCAGCAAGCACCCTTCTCGACTCA
AGAGTTACACTAGCTTGTGATGTTTGTTGAGAGAAACTATAGTATGGTGC
AGAAAAAACATGTTTTATTGCCTAGTTACATACATATCACCTAGTCATGT
GGATGGTTGGATAGCATTCATCTATTCAATTGTCTTCACACGCACACCCT
CAAGAAAAGGACTATCTGTATCAATTAGTCAAGTCCTATACAAATACATG
AAAGGAGAGATGTACTTTGAAGCATAAGAAACCCCTCTGAAGAGCAGAAA
CTTGGTAAGTTTCTTATGAGCTGCAGAGGAACGGAAAAGGGATTTTGCTG
CTTTAAGTGATGCAAGCATGTTGAAAAATGATGGAAGGTGACAAAAAGCA
TTGGTGACCCAGTTCCTTTTAAGGCAGGAATGGTTTGTCCTGACAATGAG
GCAATTTGGAGATTTCGTCAATTTCTCCCCTATATTGTCCATAAGATTGT
TGCACAATTGTACAAGGGCATTTGGTTCCTTGTAAGGCGCCTCCAACTAT
GTGGCACAATTTCTCCATTGTACATGGTATGTACAATCAACGGTAGCAGA
GACAGGGAGAGAATATTGTTGAACAATTTTGAGCCCCGATTGGAAGGGTG
CTTCCATTTGATTGTGACTATTGCAGGTCCAGCCTGTCTGTTCCCCCTGC
CAGCTCCCCTGGGAAAAAAAAAGAAGAGAGCGATTCTTGAGCAATTTTTG
GGTAAAACGGTACGGTCACTCCCAGCTTGCCTGGACTTGGTTATCTCATC
TCTTTTTTCCCCTTACCTATTGATACGACCATTATGCCAGTACTAGACAT
GTTTCCCACATGGAAACACAACAGTGTACTTGGTGTTTTTATTCTTATTT
TTCCCAACAGTGTACTTGAGAGATACAATACGCTGCTGGTGCCTGTGCCC
TCCCTTCCTCTGCCAGGGTGTATGTTTCGTCTTTCGTGTTATCCCTCTCA
GACCTCCACTCCTCCCTGGATATATGTGACTCCTCCCCTTCCGTTGATGT
GTGCCCCCCTCCTGCTCCCCTCCCTCCCAAATGATGCATTTTGTTCCCCC
TTTTGTTTTGTTTGTTTGCAGGTGCTCTACGTCGATCCTTTATTTCCTCC
AACAGATGTGTCACTAGGACCCTCCCTTGCCAGAAAGGCTGCCTGGAGAC
GCCCCTGTGATTTTCCTGATGCGTTCTGCCCACCCCCTTCCTCATTTTCA
TTGACCTCTGCTGCCGCTACTTCAGAACTACGACAACGACGGGGTTCCAA
AAAAGAGGCGTTTCTGTTGTCATTAGCGAGACAAAGAGCTTTCGGCACTG
GGGGGCAGCCCTCACCAAACGATGTCCGAGGAGCAGTGATGGCAGCAGAC
GCTTCCTTAACTTGTGCCCTCAAGGCGTTGGCCTCAAGGCCCCATCTTGT
ACACTCTGCTCTAAGTCTCCACAGTGGCAGAGAAGTCACAGGGGGCAGAG
CAGGCTTAGGAACAGGCAAGAGTTCCGATTTGAGTTCATCGTTGATGTCT
GGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9357:2080..5532+

>mRNA_C-tenellus_contig9357.2.1 ID=mRNA_C-tenellus_contig9357.2.1|Name=mRNA_C-tenellus_contig9357.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1182bp|location=Sequence derived from alignment at C-tenellus_contig9357:2080..5532+ (Choristocarpus tenellus KU2346)
GTTTGTTGTATCCTTACTCACCTCTTTGCAATCTTTACCATTGTGTTGCA
AACTACGAGATACAAGGTACTGGGTTACCTCATCAGATATTCCTTTTGGG
AAATATTTGCAAGCTATATGGTGGTGTCATCGCGTTCGCAAGTCCTGGGA
TCTGCGGACGAGAGGCAATCAAAGTTTAAACAGAGGAAGCGTCCAGGTTC
AAGGGTGACCGTGACGGCAACCCCAAAGCCGAGCGTAAAAGAGGTGGCAG
GTGGAATCTTTCTCTACACCACCCGTGTCCGTGACGGGAATGATTACTTC
TTCGTATATGAGGTGGAGTGTGTCCTTCCTCGCCCCCAAAGCTTGCGCTT
TTCCATTGATTTTTCGGGTTCCACAAACCTGATGCTGCTCGGAACCACGT
CGGCACAGACGGACACGAGAACAGAGCAACAGCTAATGGCAGAGGTTACT
GCAGTACCTTTCAGCCGAGTAGTGGTGGCTAGAGTGGCGATAAAAGACCC
TAATCAAGGAGGCATAATCCGGAACACATTCAACTGGGACCTCCTAGATC
CTCCTGCGGAGAGAGAGGTCACAGCTGCGGTACAGGCAAATGTTCACTCA
ATATCTCGGCTCATGGAGAGAATGGCTCCACTATCACTTGCGGGAGATGG
ACAAGCTTGTGGAGGCACAGGGCTGGGTAGGGGCACCGCCGTTTCAAAGA
GCATGAGAGCATCAGTCGATGATATTGTGAAGCGGTGTCATGCCCACGGG
GTGCTCTACGTCGATCCTTTATTTCCTCCAACAGATGTGTCACTAGGACC
CTCCCTTGCCAGAAAGGCTGCCTGGAGACGCCCCTGTGATTTTCCTGATG
CGTTCTGCCCACCCCCTTCCTCATTTTCATTGACCTCTGCTGCCGCTACT
TCAGAACTACGACAACGACGGGGTTCCAAAAAAGAGGCGTTTCTGTTGTC
ATTAGCGAGACAAAGAGCTTTCGGCACTGGGGGGCAGCCCTCACCAAACG
ATGTCCGAGGAGCAGTGATGGCAGCAGACGCTTCCTTAACTTGTGCCCTC
AAGGCGTTGGCCTCAAGGCCCCATCTTGTACACTCTGCTCTAAGTCTCCA
CAGTGGCAGAGAAGTCACAGGGGGCAGAGCAGGCTTAGGAACAGGCAAGA
GTTCCGATTTGAGTTCATCGTTGATGTCTGGG
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