mRNA_C-tenellus_contig9355.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9355.3.1
Unique NamemRNA_C-tenellus_contig9355.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9355.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9355contigC-tenellus_contig9355:3471..4965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size310
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.1277864-CDS-C-tenellus_contig9355:3470..37361680790172.1277864-CDS-C-tenellus_contig9355:3470..3736Choristocarpus tenellus KU2346CDSC-tenellus_contig9355 3471..3736 -
1680790172.1380005-CDS-C-tenellus_contig9355:4922..49411680790172.1380005-CDS-C-tenellus_contig9355:4922..4941Choristocarpus tenellus KU2346CDSC-tenellus_contig9355 4923..4941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.1477098-UTR-C-tenellus_contig9355:4941..49651680790172.1477098-UTR-C-tenellus_contig9355:4941..4965Choristocarpus tenellus KU2346UTRC-tenellus_contig9355 4942..4965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9355.3.1prot_C-tenellus_contig9355.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9355 3471..4941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9355.3.1

>prot_C-tenellus_contig9355.3.1 ID=prot_C-tenellus_contig9355.3.1|Name=mRNA_C-tenellus_contig9355.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=95bp
MGKDPKGSFRAVGNPDHLHRASSVWSVKGTVRAIANFEARHRRRGGWNLV
FPPGPGPDHNHVTAPFLADEASPQDLALHRWVNILARKGKGRGRG
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mRNA from alignment at C-tenellus_contig9355:3471..4965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9355.3.1 ID=mRNA_C-tenellus_contig9355.3.1|Name=mRNA_C-tenellus_contig9355.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1495bp|location=Sequence derived from alignment at C-tenellus_contig9355:3471..4965- (Choristocarpus tenellus KU2346)
GTCGCAAAGGTGGAAGCAGAGCTGATGGGGAAAGACCCTAAGGGTGGGTC
CTTTGCTCCTCTTTAAACAGAATGTGGAACATCCTTGTGGTGTGGCTGCC
TTTACCCGCAGTTCCTCAGAGAGTGAAAGTATCTTGGAGGGTACGAGTTT
TGCCTTGTTTGTCTATTTGGGGCTTGACTGCCCATGGATTCTTTTATGAT
ATTTTCCTACTCCAATATTTTCGGAGTAGGGAAATTTATACATTATGAAA
AGGTGTGTCCAGAACATGGATATTGACACTTCCTAACAAACACGATAGCC
GAAATTACATAAAAATCGCAACATTGGACTTTGGTCCCCAAATGGACACG
GCCTTACCCTCTAAGATACTTTGGCTCTGATGTTCTTGAGAGTTAAAGTT
TCTTAGAGGGTACGAGTTTTGCCCTGTTTGTCCATTTAGGGCTTGCCTTC
CCACAGTTTTTTTATGACACTTTACCTACTTTGATATGTTCCAGAGTAGT
TAAAATATATTAGTTATAAAAATGTGTGTTCGGAACAAGGATATTGACAC
ACTCCCTAACAAACATGATAGTCAAAATTACATCAAAATTGTAACATTGA
ATACTGGGCCCCAAATGGACGCGGCTCTACCCTCTAAGATACTTTGGCTC
TGATATATCTCAAGACCAATAAGTGATGGCAAGTTTTTCAATCGATATTT
GCATTGGAGATATCTATTTTTGGATCCATACACTAGTACTACAGTCACTC
ATCCATCAATGGCAAACTGTGTAGTATAACTTTTCCCCTTCCCATTGCAG
CTCAGTCTCTGATACCACAAAAATAAATACTCACAGCAAAGGTATAACCA
GGCCTACTCAAAAAGATTATCTGTGTTCATACTATCCCCTCGGCTCGAAC
AAAGCCCCTAGAAATAACTTCCCTTATTTGTACAACTATTGAACTTCAGA
GCCAAAGTAGCTTGGAGGGTAAAGCCGCGTCCGTTTGGGGGCAAAATCCA
ATGTTGCAATTTTTATAAATTTTTGGCTATCGCGTTGTTAGGAAGTGTCA
ATATCCTTGTTCTGGACACGACTTTCATATATTTTCATAACATAGACGTT
TTACCTATTCCCAAACATTTTGGAGTAGGAAAATGTCATTAAAAACCCTG
TGGGAAGTCAAGCACCAAACGGACAAACAGATCTAAACTCGTACCCTAAC
CCTAAGATACTTTCACTCTTCACCAACAGGTTCATTCAGAGCTGTAGGCA
ACCCAGACCACCTTCACCGTGCCTCCTCAGTCTGGAGTGTCAAGGGAACT
GTCAGGGCAATCGCTAACTTTGAAGCTCGGCACAGGAGGCGGGGCGGCTG
GAACCTCGTTTTTCCGCCTGGTCCTGGCCCTGATCACAATCATGTCACAG
CTCCTTTCCTTGCCGATGAGGCTTCTCCACAAGACCTGGCTCTGCACAGA
TGGGTCAATATCCTCGCAAGGAAGGGCAAGGGAAGAGGAAGAGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9355:3471..4965-

>mRNA_C-tenellus_contig9355.3.1 ID=mRNA_C-tenellus_contig9355.3.1|Name=mRNA_C-tenellus_contig9355.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=285bp|location=Sequence derived from alignment at C-tenellus_contig9355:3471..4965- (Choristocarpus tenellus KU2346)
ATGGGGAAAGACCCTAAGGGTTCATTCAGAGCTGTAGGCAACCCAGACCA
CCTTCACCGTGCCTCCTCAGTCTGGAGTGTCAAGGGAACTGTCAGGGCAA
TCGCTAACTTTGAAGCTCGGCACAGGAGGCGGGGCGGCTGGAACCTCGTT
TTTCCGCCTGGTCCTGGCCCTGATCACAATCATGTCACAGCTCCTTTCCT
TGCCGATGAGGCTTCTCCACAAGACCTGGCTCTGCACAGATGGGTCAATA
TCCTCGCAAGGAAGGGCAAGGGAAGAGGAAGAGGA
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